View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3045_low_9 (Length: 233)
Name: NF3045_low_9
Description: NF3045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3045_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 42549239 - 42549044
Alignment:
| Q |
18 |
acaattttactacatttctcataaacaaatgattcatcaacattcacccctaaggccttcttcacctcggcgatattcaagaaccgagcaaccaaccaat |
117 |
Q |
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| T |
42549239 |
acaattttactacatttctcataaacaaatgattcatcaacattcacccctaaggccttcttcacctcggcgatattcaagaactgagcaaccatccaat |
42549140 |
T |
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| Q |
118 |
cttcataaggaactttccgcgaataatcatacaaagtggcaaaccctgtcatgttttgcaacagatccaaaacacggcttctcgcatctgttgctt |
213 |
Q |
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| T |
42549139 |
cttcataaggaactttccgcgaataatcatacaaagtagcaaaccctgtcatgttttgcaacagatccaaaacacggcttctcgcatcagttgctt |
42549044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 33016633 - 33016500
Alignment:
| Q |
39 |
taaacaaatgattcatcaacattcacccctaaggccttcttcacctcggcgatattcaagaaccgagcaaccaaccaatcttcataaggaactttccgcg |
138 |
Q |
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|||||||||||||||| ||||| ||||| || ||||||||||||||||| || |||||||| ||||||| ||| |||||| ||||||| |||| |
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| T |
33016633 |
taaacaaatgattcattcacatttacccccaaagccttcttcacctcggcaatgttcaagaatttttcaaccaaatcatcctcataaagaactttacgcg |
33016534 |
T |
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| Q |
139 |
aataatcatacaaagtggcaaaccctgtcatgtt |
172 |
Q |
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| T |
33016533 |
aatagtcatacaaagtagccaaccctgtcatgtt |
33016500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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