View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3047_high_17 (Length: 340)
Name: NF3047_high_17
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 48923965 - 48923661
Alignment:
| Q |
1 |
acctatgattcatagaagttttcattataattctgatttcttataagcatgtagcaggattttgagtatgtgtttgtagatgcatatgtataaacatgta |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48923965 |
acctatgattcatagaagttttcattataattctgatttcttataagca----gctggattttgagtatgtgtttgtagatgcatatgtataaacatgta |
48923870 |
T |
|
| Q |
101 |
gataacctttatgtttcttattctgcagttgaacattttttaagtcgaaattttctccataaagttactcctgcaattgacattgtcccccagttacaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48923869 |
gataacctttatgtttcttattctgcagttgaacattttttaagtcgaaattttctccataaagttactcctgcaattgacattgtcccccagttacaag |
48923770 |
T |
|
| Q |
201 |
aacaagttaatttgtatacatatttagctttaaatactgttggaacattgcaaagggatgctcctcctaatcagctctcgccaagttaccctgagcaaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48923769 |
aacaagttaatttgtatacatatttagctttaaatactgttggaacattgcaaagggatgctcctcctaatcagctcccgccaagttaccctgagcaaga |
48923670 |
T |
|
| Q |
301 |
atggtgaca |
309 |
Q |
| |
|
||||||||| |
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| T |
48923669 |
atggtgaca |
48923661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 48912549 - 48912272
Alignment:
| Q |
18 |
gttttcattataattctgatttcttataagcatgtagcaggattttgagta--tgtgtttgtagatgcatatgtataaacatgtagataacctttatgtt |
115 |
Q |
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|||||||||| |||| ||||| | ||||||||||| | ||||||||| || | ||| ||| ||||||||||||||| | | ||||||||||||||| |
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| T |
48912549 |
gttttcattagaatttagatttgtcataagcatgtaactggattttgactacatatgtccgtaattgcatatgtataaacgtatcgataacctttatgtt |
48912450 |
T |
|
| Q |
116 |
tcttattctgcagttgaacattttttaagtcgaaattttctccataaagttactcctgcaattgacattgtcccccagttacaagaacaagttaatttgt |
215 |
Q |
| |
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||||||||||||||||||| ||| |||| | |||||| || |||||||||| || | | || || || ||| |||||||||||||||||||||||||| |
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| T |
48912449 |
tcttattctgcagttgaac-tttgttaatttgaaattatcgccataaagtttcttcgacgatggatatagtctcccagttacaagaacaagttaatttg- |
48912352 |
T |
|
| Q |
216 |
ata-catatttagctttaaatactgttggaacattgcaaagggatgctcctcctaatcagctctcgccaagttaccctga |
294 |
Q |
| |
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||| || ||||||||| ||||||||||| ||||||||||||||||||||| ||| |||||| || |||| ||||||||| |
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| T |
48912351 |
atagcacatttagcttctaatactgttgggacattgcaaagggatgctccttctagtcagctttcaccaaattaccctga |
48912272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 291
Target Start/End: Original strand, 13599836 - 13599932
Alignment:
| Q |
195 |
tacaagaacaagttaatttgtatacatatttagctttaaatactgttggaacattgcaaagggatgctcctcctaatcagctctcgccaagttaccc |
291 |
Q |
| |
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|||||||||||||||||||| | || | |||||||||||||| || ||||||||||||||||||||||||||||| | |||||||||| |||||| |
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| T |
13599836 |
tacaagaacaagttaatttgattgcaaacttagctttaaataccgtcggaacattgcaaagggatgctcctcctaaccgcctctcgccaaattaccc |
13599932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 28656129 - 28656068
Alignment:
| Q |
108 |
tttatgtttcttattctgcagttgaacattttttaagtcgaaattttctccataaagttact |
169 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
28656129 |
tttatgtttcttattctgcagttgaaatttttttaagtcgaaatattctccataaagttact |
28656068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 28656299 - 28656199
Alignment:
| Q |
6 |
tgattcatagaagttttcattataattctgatttcttataagcatgtagcaggatt------ttgagtatgtgtttgtagatgcatatgtataaacatgt |
99 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
28656299 |
tgattcataaaagttttcattaaaattctgatttcacataagcatttagttggattatgattttgagtatgtgtttgtagatgcatatgtataaacatgt |
28656200 |
T |
|
| Q |
100 |
a |
100 |
Q |
| |
|
| |
|
|
| T |
28656199 |
a |
28656199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 31281549 - 31281488
Alignment:
| Q |
108 |
tttatgtttcttattctgcagttgaacattttttaagtcgaaattttctccataaagttact |
169 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
31281549 |
tttatgtttcttattctgcagttgaaatttttttaagtcgaaatattctccataaagttact |
31281488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 55425154 - 55425215
Alignment:
| Q |
108 |
tttatgtttcttattctgcagttgaacattttttaagtcgaaattttctccataaagttact |
169 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
55425154 |
tttatgtttcttattctgcagttgaaatttttttaagtcgaaatattctccataaagttact |
55425215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 31281719 - 31281619
Alignment:
| Q |
6 |
tgattcatagaagttttcattataattctgatttcttataagcatgtagcaggattttga------gtatgtgtttgtagatgcatatgtataaacatgt |
99 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||| |||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
31281719 |
tgattcataaaagttttcattaaaattctaatttcacataagcatttagttggattttgattttgagtatgtgtttgtagatgcatatgtataaacatgt |
31281620 |
T |
|
| Q |
100 |
a |
100 |
Q |
| |
|
| |
|
|
| T |
31281619 |
a |
31281619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 55424996 - 55425096
Alignment:
| Q |
6 |
tgattcatagaagttttcattataattctgatttcttataagcatgtagcaggattttgagt------atgtgtttgtagatgcatatgtataaacatgt |
99 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||| |||||||| ||| ||||||||| | ||||||||||||||||||||||||||| |||| |
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|
| T |
55424996 |
tgattcataaaagttttcattaaaattctaatttcacataagcatttagttggattttgattttgagcatgtgtttgtagatgcatatgtataaatatgt |
55425095 |
T |
|
| Q |
100 |
a |
100 |
Q |
| |
|
| |
|
|
| T |
55425096 |
a |
55425096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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