View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3047_high_18 (Length: 333)
Name: NF3047_high_18
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 18789748 - 18789480
Alignment:
| Q |
17 |
cctttatggtttgaatggattaggttcttattgtgatgaattcaacatgtgcacttgtctatacaaaaaagaatcatcaacgtataattgtaatcttggg |
116 |
Q |
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| T |
18789748 |
cctttatggtttgaatggattaggttcttattgtgatgacttcaacatgtgcacttgtttatacaaaaaagaatcatcaacgtataattgtaatcttggg |
18789649 |
T |
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| Q |
117 |
ttgggagcatgcatcaagggtaactgtgattcagtttgttgcagtgcaagatgtgcttcaaaacttaaacattcttttgggacttgtactaatggtaatc |
216 |
Q |
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| T |
18789648 |
ttgggagcatgcatcaagggtaactgtgattcagtttgttgcagtgcaagatgtgcttcaaaacttaaacattcttttgggtcttgtactaatggtaatc |
18789549 |
T |
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| Q |
217 |
cggatagatgcatttgtcactatgtaccggagtagcttactcagattattattatatcgaaataaaagt |
285 |
Q |
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| T |
18789548 |
cggatagatgcatttgtcactatgtaccggagtagcttactcagattattattatatcgaaataaaagt |
18789480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 18779693 - 18779540
Alignment:
| Q |
35 |
attaggttcttattgtgatgaattcaacatgtgcacttgtctatacaaaaaagaatcatcaacgtataattgtaatcttgggttgggagcatgcatcaag |
134 |
Q |
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||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| |
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| T |
18779693 |
attaggttctttttgtgatgactccaacatgtgcacttgtctatacaaaaaagaatcatcaacgtatagttgtaatatggggttgggagcatgcatcaag |
18779594 |
T |
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| Q |
135 |
ggtaactgtgattcagtttgttgcagtgcaagatgtgcttcaaaacttaaacat |
188 |
Q |
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| T |
18779593 |
ggtaactgtgattcaagttgttgcaatgtaagatgtgcttcaaaatttaaacat |
18779540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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