View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3047_high_19 (Length: 325)
Name: NF3047_high_19
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 49494611 - 49494897
Alignment:
| Q |
8 |
tgaaatgttccacgactactatgaatttcgtttttctggtgtaattatttatatgtttgctgaagttcgcgtaatgattttggttaaagagttgaaataa |
107 |
Q |
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| T |
49494611 |
tgaaatgttccacgactactatgaatttcgtttttctggtgtaattatttatatgtttgctga--------------ttttggttaaagggttgaaataa |
49494696 |
T |
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| Q |
108 |
gttcaaactagcttattaattaagtttggataattaaactgcttaaaatcattttgcacacatttataccgataagaacaaatactacacgcgatcttag |
207 |
Q |
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| T |
49494697 |
gttcaaactagcttattaattaagtttggataattaaactgcttaaaatcattttgcacacatctataccgataagaacaaatactaaacgcgatcttag |
49494796 |
T |
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| Q |
208 |
ccgaaaggtcaagagagatgagttgaaatatggccttgcagttccatttaacacctactcagttcctttcttgagtcttgacttgttgatgtggggcttc |
307 |
Q |
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| T |
49494797 |
ccaaaaggtcaagagagatgagttgaaatatggccttgcagctccatttaacacctactcagttcctttcttgagtcttgacttgttgatgtggggcttc |
49494896 |
T |
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