View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3047_high_28 (Length: 278)
Name: NF3047_high_28
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_high_28 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 10316467 - 10316744
Alignment:
| Q |
1 |
tcattgtttatgtcattgctcaaacatgtgtcttgtgaaatgctcaccatagaattgttggtggagaattgctccatcttgcactctttattttccaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10316467 |
tcattgtttatgtcattgctcaaacatgtgtcttgtgaaatgctcaccatagaattgttggtagagaattgctccatcttgcactctttattttccaatc |
10316566 |
T |
|
| Q |
101 |
cataaatgtaaccattgttattattcccttgattcatgtaagaataatttgataacatgttctcattcaagggtgtgtttggaatttggatttgaggttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10316567 |
cataaatgtaaccattgttattattcccttgattcatgtaagaataatttgataacatgttctcattcaagggtgtgtttggaatttggatttgaggttg |
10316666 |
T |
|
| Q |
201 |
aagttgatgtgatgaagatgagctactttgcattaatggaccattgaaattcccttggttggtagcatgataattatt |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10316667 |
aagttgatgtgatgaagatgagctactttgcattaatggaccattgaaattcccttggttggtagcatgataattatt |
10316744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University