View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3047_high_41 (Length: 214)

Name: NF3047_high_41
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3047_high_41
NF3047_high_41
[»] chr6 (1 HSPs)
chr6 (1-193)||(380601-380793)
[»] chr7 (3 HSPs)
chr7 (1-193)||(6232183-6232375)
chr7 (1-135)||(48888156-48888289)
chr7 (10-131)||(19883466-19883586)
[»] chr4 (4 HSPs)
chr4 (1-151)||(55329126-55329275)
chr4 (1-135)||(18848030-18848163)
chr4 (3-136)||(55353539-55353671)
chr4 (1-135)||(42111003-42111136)
[»] chr8 (3 HSPs)
chr8 (1-132)||(42202665-42202795)
chr8 (41-135)||(44684487-44684580)
chr8 (42-121)||(25967835-25967913)
[»] chr2 (2 HSPs)
chr2 (1-100)||(38971024-38971123)
chr2 (30-121)||(16080456-16080546)
[»] chr5 (4 HSPs)
chr5 (1-135)||(3678230-3678362)
chr5 (5-133)||(42628995-42629122)
chr5 (1-130)||(2756301-2756429)
chr5 (41-135)||(3761009-3761102)
[»] chr3 (1 HSPs)
chr3 (46-135)||(51361293-51361381)
[»] scaffold0691 (1 HSPs)
scaffold0691 (15-135)||(1168-1287)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 380793 - 380601
Alignment:
Q  1 ttaaggtgatttcgtggaattgggctaattctagatttaggagtcctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagata 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  380793 ttaaggtgatttcgtggaattgggctaattctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattgagata 380694  T
Q  101 acgtggggcagttttagaggtgtccgggacttttgtctgttgaggttgctgtagttctgctgcaccttttgggcttttgttttctgctatgcc 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  380693 acgtggggcagttttagaggtgtccgggacttttgtctgttgaggttgttgtagttctgctgcaccttttgggctattgttttctgctatgcc 380601  T

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Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 6232183 - 6232375
Alignment:
Q  1 ttaaggtgatttcgtggaattgggctaattctagatttaggagtcctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagata 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6232183 ttaaggtgatttcgtggaattgggctaattctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattgagata 6232282  T
Q  101 acgtggggcagttttagaggtgtccgggacttttgtctgttgaggttgctgtagttctgctgcaccttttgggcttttgttttctgctatgcc 193  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  6232283 atgtggggcagttttagaggtgtccgggacttttgtctgttgaggttgctttagttctgctgcactttttgggcttttgttttctgctatgcc 6232375  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 48888156 - 48888289
Alignment:
Q  1 ttaaggtgatttcgtggaattgggctaattctagatttaggagtcctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagata 100  Q
    |||||||| | |||||||||||||  ||||||||| | | ||||||||| ||||||||||||||||||||  ||||||||||||||||  | |||||||     
T  48888156 ttaaggtgctctcgtggaattgggtgaattctagactaaagagtcctccttgcctctattacgagtggtgttggaaccccaaggaatgtcttttgagat- 48888254  T
Q  101 acgtggggcagttttagaggtgtccgggacttttg 135  Q
      |||||| |||| |||||||||||||||||||||    
T  48888255 tggtggggtagttctagaggtgtccgggacttttg 48888289  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 19883586 - 19883466
Alignment:
Q  10 tttcgtggaattgggctaattctagatttaggagtcctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagataacgtggggc 109  Q
    ||||||||||||||||    |||||| | | ||||||||| ||||||||||||||||||||  |||||||||||||||| |||||||||| |  |||||     
T  19883586 tttcgtggaattgggcggtgtctagactaaagagtcctccgtgcctctattacgagtggtgttggaaccccaaggaatgtttattgagat-agttggggt 19883488  T
Q  110 agttttagaggtgtccgggact 131  Q
    ||||||||||||||||||||||    
T  19883487 agttttagaggtgtccgggact 19883466  T

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Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 55329126 - 55329275
Alignment:
Q  1 ttaaggtgatttcgtggaattgggctaattctagatttaggagtcctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagata 100  Q
    |||||||||||||||| |||||  | ||||| ||| ||| |||| |||| ||||||||||||||||||||  |||||| ||||||||||||||||||||     
T  55329126 ttaaggtgatttcgtgaaattgaacgaattcaagacttaagagttctccttgcctctattacgagtggtgttggaacctcaaggaatgcttattgagat- 55329224  T
Q  101 acgtggggcagttttagaggtgtccgggacttttgtctgttgaggttgctg 151  Q
    | |||||||||||||||||||||||| |||||||  |||||||||||||||    
T  55329225 aggtggggcagttttagaggtgtccgtgactttttcctgttgaggttgctg 55329275  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 18848030 - 18848163
Alignment:
Q  1 ttaaggtgatttcgtggaattgggctaattctagatttaggagtcctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagata 100  Q
    |||||||| ||| ||||||||||||   | ||||| |||  |||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||||     
T  18848030 ttaaggtgctttggtggaattgggcggttactagacttaaaagtcctccctgcctctattacgagtggtgttggaaccccaaggaatgcctattgagat- 18848128  T
Q  101 acgtggggcagttttagaggtgtccgggacttttg 135  Q
    |  ||||| ||||||||||||||||||||||||||    
T  18848129 agttggggtagttttagaggtgtccgggacttttg 18848163  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 55353539 - 55353671
Alignment:
Q  3 aaggtgatttcgtggaattgggctaattctagatttaggagtcctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagataac 102  Q
    |||||||| |||||||||||||| ||||| ||| |||  |||||||| ||||||| |||||| |||||| ||||||||||| ||||| | ||| ||| |     
T  55353539 aaggtgatctcgtggaattgggcgaattccagacttaaaagtcctccttgcctcttttacgattggtgctggaaccccaagaaatgccttttgcgat-ag 55353637  T
Q  103 gtggggcagttttagaggtgtccgggacttttgt 136  Q
    |||||| ||||| ||||||| | |||||| ||||    
T  55353638 gtggggtagtttcagaggtggcagggactattgt 55353671  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 42111136 - 42111003
Alignment:
Q  1 ttaaggtgatttcgtggaattgggctaattctagatttaggagtcctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagata 100  Q
    |||||||| | || ||||||||||| | | | ||| ||| ||||||||  ||||||| ||  ||||||||  |||||||||||||||||||  |  || |    
T  42111136 ttaaggtgctctcttggaattgggcgattacaagacttaagagtcctcactgcctcttttttgagtggtgttggaaccccaaggaatgcttgctccgaca 42111037  T
Q  101 acgtggggcagttttagaggtgtccgggacttttg 135  Q
      |||||| ||||||||||||||||||||||||||    
T  42111036 g-gtggggtagttttagaggtgtccgggacttttg 42111003  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 42202665 - 42202795
Alignment:
Q  1 ttaaggtgatttcgtggaattgggctaattctagatttaggagtcctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagata 100  Q
    |||||||||||| |||||||||||  ||||||||| ||| ||||||||| ||||||||||||||||||||  ||||||| |  ||||||||||||||||     
T  42202665 ttaaggtgattttgtggaattgggtgaattctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagat- 42202763  T
Q  101 acgtggggcagttttagaggtgtccgggactt 132  Q
    |  ||||||||||||||||||||| |||||||    
T  42202764 agatggggcagttttagaggtgtctgggactt 42202795  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 135
Target Start/End: Original strand, 44684487 - 44684580
Alignment:
Q  41 gagtcctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagataacgtggggcagttttagaggtgtccgggacttttg 135  Q
    ||||||||| ||||||| ||| ||||||||  |||||||||||||||||||  |  ||  | |||||| ||||||||||||||| ||||||||||    
T  44684487 gagtcctccctgcctcttttatgagtggtgttggaaccccaaggaatgcttgctccga-caggtggggtagttttagaggtgtctgggacttttg 44684580  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 25967913 - 25967835
Alignment:
Q  42 agtcctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagataacgtggggcagttttagaggt 121  Q
    |||||||| ||||||| |||||||||| || |||||||||| || || || || ||||| || |||||||||||||||||    
T  25967913 agtcctccttgcctcttttacgagtggagctggaaccccaaagagtgtttgttaagatagcg-ggggcagttttagaggt 25967835  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 38971024 - 38971123
Alignment:
Q  1 ttaaggtgatttcgtggaattgggctaattctagatttaggagtcctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagata 100  Q
    ||||||||||||||||||||||||| ||||||||| |||  |||||||  ||||||||||||||||||||  |||||||||| |||||||||||||||||    
T  38971024 ttaaggtgatttcgtggaattgggcaaattctagacttaaaagtcctcattgcctctattacgagtggtgttggaaccccaaagaatgcttattgagata 38971123  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 16080456 - 16080546
Alignment:
Q  30 tctagatttaggagtcctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagataacgtggggcagttttagaggt 121  Q
    |||||||| | ||||||||| ||||||| ||| ||||||||  |||||||||||||||| ||  ||||| ||  ||||| ||||||||||||    
T  16080456 tctagattaaagagtcctccttgcctcttttatgagtggtgttggaaccccaaggaatgtttgatgaga-aaattggggtagttttagaggt 16080546  T

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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 3678362 - 3678230
Alignment:
Q  1 ttaaggtgatttcgtggaattgggctaattctagatttaggagtcctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagata 100  Q
    ||||||||||||||||||||||||  | | ||||| ||| ||||||||| |||||||||||| ||| |||  |||||||||  ||||||||||| |||||    
T  3678362 ttaaggtgatttcgtggaattgggtgattactagacttaagagtcctccttgcctctattacaagttgtgttggaaccccatcgaatgcttattaagata 3678263  T
Q  101 acgtggggcagttttagaggtgtccgggacttttg 135  Q
      |  |||||||||||||||||||| |||||||||    
T  3678262 --ggtgggcagttttagaggtgtcctggacttttg 3678230  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 42629122 - 42628995
Alignment:
Q  5 ggtgatttcgtggaattgggctaattctagatttaggagtcctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagataacgt 104  Q
    |||| ||||||||||||||||   | ||||| | |  |||||||| ||||||||||| |||||||| |||||||||||||||||  |  |||||| |  |    
T  42629122 ggtgctttcgtggaattgggcggttactagactgaaaagtcctccctgcctctattatgagtggtgtcggaaccccaaggaatgtcttctgagat-agtt 42629024  T
Q  105 ggggcagttttagaggtgtccgggacttt 133  Q
    |||| ||||||||||| ||||||||||||    
T  42629023 ggggtagttttagaggcgtccgggacttt 42628995  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 2756429 - 2756301
Alignment:
Q  1 ttaaggtgatttcgtggaattgggctaattctagatttaggagtcctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagata 100  Q
    |||||||| ||||||||||||||     ||||||| | | ||| ||||| ||||| ||||||||||||||  ||||||||||| |||| ||| ||||||     
T  2756429 ttaaggtgctttcgtggaattggatggtttctagactaaagaggcctccgtgcctttattacgagtggtgttggaaccccaagaaatgtttactgagat- 2756331  T
Q  101 acgtggggcagttttagaggtgtccgggac 130  Q
    |  ||||| ||||||||||| |||||||||    
T  2756330 agttggggtagttttagaggcgtccgggac 2756301  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 3761102 - 3761009
Alignment:
Q  41 gagtcctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagataacgtggggcagttttagaggtgtccgggacttttg 135  Q
    |||| |||| ||||||||||||||||| ||   ||||||||||||||| ||| ||| ||| | ||||| ||||||||||||||  ||||||||||    
T  3761102 gagttctccctgcctctattacgagtgctgtttgaaccccaaggaatgtttactgatatagc-tggggtagttttagaggtgtttgggacttttg 3761009  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 51361293 - 51361381
Alignment:
Q  46 ctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagataacgtggggcagttttagaggtgtccgggacttttg 135  Q
    |||| ||||||||||| ||||||||  ||||||||||||||||| ||||||||| |  ||||| ||||||||||||||| ||||||||||    
T  51361293 ctccctgcctctattatgagtggtgttggaaccccaaggaatgcctattgagat-agttggggtagttttagaggtgtcagggacttttg 51361381  T

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Target: scaffold0691 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 1168 - 1287
Alignment:
Q  15 tggaattgggctaattctagatttaggagtcctccatgcctctattacgagtggtgccggaaccccaaggaatgcttattgagataacgtggggcagttt 114  Q
    ||||||||||| | | | ||| ||| ||||||||| ||||||| ||| ||||||||  |||| ||||||||||||||  |  ||  | |||||| |||||    
T  1168 tggaattgggcgattacaagacttaagagtcctccctgcctcttttatgagtggtgttggaagcccaaggaatgcttgctccga-caggtggggtagttt 1266  T
Q  115 tagaggtgtccgggacttttg 135  Q
    |||||||||||||||||||||    
T  1267 tagaggtgtccgggacttttg 1287  T

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