View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3047_high_5 (Length: 543)
Name: NF3047_high_5
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 15 - 527
Target Start/End: Complemental strand, 7036271 - 7035759
Alignment:
| Q |
15 |
ttattatatgagtccttttttgttgtgagttggtgtcttcagtgggtgatgttttgagctactgttaatttagctctgttctaatcatctaggtgcatct |
114 |
Q |
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| T |
7036271 |
ttattatatgagtccttttttgttgtgagttggtgtcttcagtgggtgatgttttgagctaatgttaatttagctctgttctaatcatctaggtgcatct |
7036172 |
T |
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| Q |
115 |
tattagtctctctattttgtgttggtggtggtggacttttccgtaatgaagaaaggatatagaactcatcaaacatacctcaatcatgcattaacttgta |
214 |
Q |
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| T |
7036171 |
tattagtctctctattttgtgttggtggtggtggacttttcagtaatgaagaaaggatatagaactcatcaaacatacctcaatcatgcattaacttgta |
7036072 |
T |
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| Q |
215 |
gttgtactagacataatgtataggaaatagaaataataatgaatttaaaatactgtaaaatttcttacaaaatactaagcttgcttgattataatatata |
314 |
Q |
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| T |
7036071 |
ggtgtactagacataatgtataggaaatagaaataataatgaatttaaaatactgtaaaatttcttacaaaatactaagcttgcttgattataatatata |
7035972 |
T |
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| Q |
315 |
ggttgtgttaatactttctcccaattaatattacatgaaatagataaaaagataaatcccacaagtaaacacaactcaataataagcatcaaggtttcct |
414 |
Q |
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| T |
7035971 |
ggttgtgttaatactttctcccaattaatattacatgaaatagataaaaagataaatcccacaagtaaacacaacccaataataagcatcaaggtttcct |
7035872 |
T |
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| Q |
415 |
tatcattcgcttcatccatgttttcgtccttttctccctagctgttctgctttgtcatacaaaccttgattacaagaagtcaaaatcatatcagggacaa |
514 |
Q |
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| T |
7035871 |
tatcattcgcttcatccatgttttcgtccttttctccctagctcttccgctttgtcatacaaaccttgattacaagaagtcaaaatcatatcagggacaa |
7035772 |
T |
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| Q |
515 |
atagtgtaataag |
527 |
Q |
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| T |
7035771 |
atagtgtaataag |
7035759 |
T |
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Back To:
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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 432 - 515
Target Start/End: Complemental strand, 28095087 - 28095004
Alignment:
| Q |
432 |
atgttttcgtccttttctccctagctgttctgctttgtcatacaaaccttgattacaagaa-gtcaaaatcatatcagggacaaa |
515 |
Q |
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| T |
28095087 |
atgttttcgtcattttatcctttgttcttctgctttgtcctacaa-ccttgcttacaacaaagtgaaaatcatatcagggacaaa |
28095004 |
T |
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