View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3047_high_7 (Length: 530)

Name: NF3047_high_7
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3047_high_7
NF3047_high_7
[»] chr2 (49 HSPs)
chr2 (17-519)||(18789253-18789748)
chr2 (35-188)||(18779540-18779693)
chr2 (306-358)||(17736787-17736839)
chr2 (306-356)||(10109661-10109711)
chr2 (313-358)||(7201501-7201546)
chr2 (313-358)||(43424653-43424698)
chr2 (318-357)||(19967413-19967452)
chr2 (308-358)||(346141-346191)
chr2 (312-358)||(3752796-3752842)
chr2 (316-358)||(27906245-27906286)
chr2 (313-359)||(31582179-31582225)
chr2 (313-355)||(32887356-32887398)
chr2 (308-357)||(3196555-3196604)
chr2 (313-358)||(23718929-23718974)
chr2 (313-358)||(24106601-24106646)
chr2 (313-358)||(33063980-33064025)
chr2 (313-358)||(40365428-40365473)
chr2 (306-358)||(9517024-9517076)
chr2 (313-365)||(36193966-36194018)
chr2 (308-355)||(37132997-37133044)
chr2 (313-360)||(41187479-41187526)
chr2 (308-358)||(5028850-5028900)
chr2 (313-359)||(9383231-9383277)
chr2 (313-359)||(9842224-9842270)
chr2 (335-365)||(10735875-10735905)
chr2 (312-358)||(21929465-21929510)
chr2 (312-358)||(22558971-22559017)
chr2 (308-358)||(29798534-29798584)
chr2 (318-360)||(44526120-44526162)
chr2 (313-358)||(1861831-1861876)
chr2 (308-357)||(4226988-4227037)
chr2 (313-358)||(11551162-11551207)
chr2 (313-358)||(16221368-16221413)
chr2 (314-359)||(17328029-17328074)
chr2 (313-354)||(24305327-24305368)
chr2 (313-358)||(27244651-27244696)
chr2 (313-358)||(29133506-29133551)
chr2 (313-354)||(39688254-39688295)
chr2 (313-358)||(42475132-42475177)
chr2 (313-358)||(42791289-42791334)
chr2 (308-360)||(6765602-6765654)
chr2 (306-354)||(7262804-7262852)
chr2 (313-357)||(10195684-10195728)
chr2 (313-357)||(10332297-10332341)
chr2 (306-358)||(17413347-17413399)
chr2 (318-354)||(34685991-34686027)
chr2 (318-354)||(34708412-34708448)
chr2 (313-357)||(40546311-40546355)
chr2 (313-353)||(41778966-41779006)
[»] scaffold0012 (1 HSPs)
scaffold0012 (308-358)||(118813-118863)
[»] chr4 (50 HSPs)
chr4 (305-358)||(9913893-9913946)
chr4 (313-359)||(39171392-39171438)
chr4 (305-358)||(4916149-4916202)
chr4 (313-358)||(35287529-35287574)
chr4 (313-358)||(43374294-43374339)
chr4 (313-360)||(9539215-9539262)
chr4 (309-360)||(36059020-36059071)
chr4 (313-358)||(9946421-9946466)
chr4 (313-354)||(12698595-12698636)
chr4 (313-358)||(35021489-35021534)
chr4 (313-358)||(54859731-54859776)
chr4 (313-358)||(56565005-56565050)
chr4 (306-350)||(9221960-9222004)
chr4 (313-357)||(12502309-12502353)
chr4 (306-358)||(32430138-32430190)
chr4 (306-354)||(35151455-35151503)
chr4 (306-342)||(51847973-51848009)
chr4 (322-361)||(16877241-16877280)
chr4 (313-359)||(1756968-1757014)
chr4 (305-359)||(2932116-2932170)
chr4 (308-358)||(11198758-11198808)
chr4 (306-360)||(12588855-12588909)
chr4 (308-358)||(14202496-14202546)
chr4 (306-360)||(16432972-16433026)
chr4 (313-355)||(23154591-23154633)
chr4 (308-358)||(30780123-30780173)
chr4 (305-355)||(41402217-41402267)
chr4 (313-358)||(241406-241451)
chr4 (313-358)||(2186355-2186400)
chr4 (313-358)||(8020669-8020714)
chr4 (313-358)||(10303533-10303578)
chr4 (313-358)||(10401418-10401463)
chr4 (312-357)||(11949684-11949729)
chr4 (305-354)||(12757310-12757359)
chr4 (313-358)||(15849228-15849273)
chr4 (313-358)||(19479499-19479544)
chr4 (313-358)||(19588148-19588193)
chr4 (313-358)||(32180824-32180869)
chr4 (313-358)||(36203230-36203275)
chr4 (313-358)||(39606589-39606633)
chr4 (305-358)||(50774567-50774620)
chr4 (313-358)||(52270052-52270097)
chr4 (313-358)||(53468593-53468638)
chr4 (313-358)||(54857637-54857682)
chr4 (313-354)||(55421591-55421632)
chr4 (308-360)||(2448141-2448193)
chr4 (318-358)||(19935188-19935228)
chr4 (313-361)||(23809940-23809988)
chr4 (308-360)||(32923247-32923299)
chr4 (313-357)||(52132324-52132368)
[»] chr5 (41 HSPs)
chr5 (306-357)||(22619869-22619920)
chr5 (309-359)||(40730213-40730263)
chr5 (308-358)||(10199013-10199063)
chr5 (308-358)||(24498578-24498628)
chr5 (313-363)||(35270703-35270753)
chr5 (313-359)||(42613226-42613272)
chr5 (310-363)||(3630648-3630701)
chr5 (313-358)||(5551303-5551348)
chr5 (317-358)||(7336341-7336382)
chr5 (313-358)||(8410467-8410512)
chr5 (313-358)||(8543570-8543615)
chr5 (305-354)||(9584597-9584646)
chr5 (309-358)||(22585646-22585695)
chr5 (313-358)||(28207126-28207171)
chr5 (313-358)||(34191427-34191472)
chr5 (313-358)||(42473888-42473933)
chr5 (313-360)||(10704353-10704400)
chr5 (306-353)||(22394034-22394081)
chr5 (313-360)||(40715971-40716018)
chr5 (312-358)||(14880406-14880452)
chr5 (313-359)||(18589889-18589935)
chr5 (305-351)||(20718969-20719015)
chr5 (312-354)||(30488923-30488965)
chr5 (308-358)||(32559298-32559348)
chr5 (313-355)||(39610363-39610405)
chr5 (313-358)||(2839792-2839837)
chr5 (313-358)||(10359619-10359664)
chr5 (313-358)||(11637594-11637639)
chr5 (308-357)||(16193102-16193151)
chr5 (313-358)||(17708068-17708113)
chr5 (317-358)||(18041297-18041338)
chr5 (313-358)||(24408489-24408534)
chr5 (313-358)||(27721697-27721742)
chr5 (313-358)||(32858664-32858709)
chr5 (313-358)||(37932324-37932369)
chr5 (305-353)||(4040401-4040449)
chr5 (318-358)||(12165232-12165272)
chr5 (314-362)||(17426208-17426256)
chr5 (305-357)||(20175720-20175772)
chr5 (313-361)||(24485690-24485738)
chr5 (312-360)||(27174819-27174867)
[»] scaffold0460 (1 HSPs)
scaffold0460 (312-358)||(1247-1293)
[»] chr7 (44 HSPs)
chr7 (305-359)||(5526718-5526772)
chr7 (313-354)||(44819515-44819556)
chr7 (313-358)||(46207754-46207799)
chr7 (313-358)||(47589575-47589620)
chr7 (313-359)||(18378395-18378441)
chr7 (313-358)||(6023303-6023348)
chr7 (313-354)||(7670432-7670473)
chr7 (313-358)||(10025988-10026033)
chr7 (313-358)||(13955474-13955519)
chr7 (313-358)||(19416508-19416553)
chr7 (313-358)||(27993051-27993096)
chr7 (313-358)||(35103490-35103535)
chr7 (313-358)||(35142171-35142216)
chr7 (313-358)||(41132438-41132483)
chr7 (313-358)||(47677599-47677644)
chr7 (313-360)||(40808181-40808228)
chr7 (308-355)||(48069854-48069901)
chr7 (313-359)||(580948-580994)
chr7 (313-355)||(5458093-5458135)
chr7 (313-359)||(10244720-10244766)
chr7 (313-359)||(21993175-21993221)
chr7 (316-358)||(30781446-30781488)
chr7 (308-358)||(34448627-34448677)
chr7 (312-358)||(36341086-36341132)
chr7 (316-358)||(38728202-38728244)
chr7 (313-359)||(39801699-39801745)
chr7 (308-358)||(43539121-43539171)
chr7 (312-358)||(48980481-48980527)
chr7 (313-358)||(1079714-1079759)
chr7 (317-358)||(4491142-4491183)
chr7 (313-358)||(4905270-4905315)
chr7 (313-358)||(19626547-19626592)
chr7 (313-358)||(23198771-23198816)
chr7 (313-350)||(24027081-24027118)
chr7 (307-360)||(26825413-26825466)
chr7 (313-358)||(46737779-46737824)
chr7 (313-358)||(47342671-47342716)
chr7 (313-358)||(48103696-48103741)
chr7 (306-358)||(964756-964808)
chr7 (305-357)||(2622320-2622372)
chr7 (308-360)||(3536271-3536323)
chr7 (322-358)||(14786117-14786153)
chr7 (318-358)||(20243249-20243289)
chr7 (312-352)||(30467981-30468021)
[»] chr1 (48 HSPs)
chr1 (308-358)||(13590104-13590154)
chr1 (312-358)||(41032925-41032971)
chr1 (313-358)||(13673539-13673584)
chr1 (317-358)||(20481094-20481135)
chr1 (313-358)||(26834514-26834559)
chr1 (313-361)||(23334579-23334627)
chr1 (312-354)||(7550894-7550936)
chr1 (316-358)||(39452454-39452496)
chr1 (308-357)||(2613717-2613766)
chr1 (313-358)||(9527991-9528036)
chr1 (313-358)||(16826348-16826393)
chr1 (313-358)||(23524818-23524863)
chr1 (313-358)||(44860905-44860950)
chr1 (313-358)||(48681955-48682000)
chr1 (306-358)||(27853349-27853401)
chr1 (306-358)||(43840340-43840392)
chr1 (313-360)||(7158765-7158812)
chr1 (313-360)||(15668490-15668537)
chr1 (313-360)||(25086475-25086522)
chr1 (308-358)||(4770645-4770695)
chr1 (313-351)||(23203323-23203361)
chr1 (320-358)||(26755610-26755648)
chr1 (312-358)||(35308179-35308225)
chr1 (313-359)||(42888568-42888614)
chr1 (313-359)||(44641520-44641566)
chr1 (308-354)||(45701326-45701372)
chr1 (308-358)||(49843428-49843478)
chr1 (306-359)||(2884463-2884516)
chr1 (312-357)||(3157738-3157783)
chr1 (313-358)||(7732416-7732461)
chr1 (313-358)||(20371836-20371881)
chr1 (317-358)||(21965918-21965959)
chr1 (313-358)||(27449467-27449512)
chr1 (308-353)||(32433112-32433157)
chr1 (313-358)||(41769837-41769882)
chr1 (313-358)||(42045394-42045439)
chr1 (313-358)||(48100716-48100761)
chr1 (313-354)||(50595905-50595946)
chr1 (308-357)||(51127907-51127956)
chr1 (317-357)||(8551454-8551493)
chr1 (308-352)||(10841900-10841944)
chr1 (313-353)||(14520943-14520983)
chr1 (308-352)||(16475671-16475715)
chr1 (308-352)||(17917155-17917199)
chr1 (318-358)||(24752675-24752715)
chr1 (308-360)||(35632891-35632943)
chr1 (313-357)||(47340782-47340826)
chr1 (313-357)||(50040351-50040395)
[»] scaffold0009 (1 HSPs)
scaffold0009 (308-353)||(17724-17769)
[»] scaffold0006 (3 HSPs)
scaffold0006 (313-358)||(171153-171198)
scaffold0006 (308-358)||(208936-208986)
scaffold0006 (313-354)||(223699-223740)
[»] chr8 (40 HSPs)
chr8 (313-358)||(39433404-39433449)
chr8 (313-361)||(6314345-6314393)
chr8 (310-360)||(18148821-18148871)
chr8 (313-359)||(33105384-33105430)
chr8 (313-358)||(14975885-14975930)
chr8 (310-355)||(16907576-16907621)
chr8 (313-358)||(24023437-24023482)
chr8 (306-355)||(26885653-26885702)
chr8 (313-358)||(27718916-27718961)
chr8 (305-358)||(32232391-32232444)
chr8 (313-357)||(5728533-5728577)
chr8 (318-358)||(31085891-31085931)
chr8 (313-360)||(37750021-37750068)
chr8 (305-356)||(44665763-44665814)
chr8 (308-354)||(1644690-1644736)
chr8 (313-359)||(2554234-2554280)
chr8 (308-358)||(16340320-16340370)
chr8 (312-358)||(33445564-33445610)
chr8 (308-358)||(39139015-39139065)
chr8 (313-359)||(44084293-44084339)
chr8 (313-354)||(1764976-1765017)
chr8 (313-358)||(5325529-5325574)
chr8 (313-358)||(8137929-8137974)
chr8 (313-354)||(8461858-8461899)
chr8 (317-358)||(15310316-15310357)
chr8 (317-358)||(15490685-15490726)
chr8 (313-358)||(18147450-18147495)
chr8 (313-358)||(18638094-18638139)
chr8 (313-358)||(29499765-29499810)
chr8 (317-358)||(30551066-30551107)
chr8 (317-358)||(34997452-34997493)
chr8 (313-358)||(38763537-38763582)
chr8 (313-358)||(40316850-40316895)
chr8 (313-358)||(42367723-42367768)
chr8 (317-358)||(44215815-44215856)
chr8 (306-359)||(44293568-44293621)
chr8 (313-361)||(17693264-17693312)
chr8 (318-358)||(19163563-19163603)
chr8 (318-358)||(22775622-22775662)
chr8 (318-354)||(35103104-35103140)
[»] chr3 (35 HSPs)
chr3 (313-358)||(32843284-32843329)
chr3 (313-357)||(20370303-20370347)
chr3 (313-358)||(4332689-4332734)
chr3 (313-358)||(21506780-21506825)
chr3 (313-358)||(22722396-22722441)
chr3 (313-358)||(28244126-28244171)
chr3 (305-358)||(39481135-39481188)
chr3 (313-358)||(44579630-44579675)
chr3 (313-358)||(53162192-53162237)
chr3 (311-359)||(2496548-2496596)
chr3 (313-357)||(25340946-25340990)
chr3 (313-356)||(52575943-52575986)
chr3 (308-358)||(3612199-3612249)
chr3 (313-355)||(14827522-14827564)
chr3 (313-355)||(20612299-20612341)
chr3 (313-355)||(43490439-43490481)
chr3 (313-359)||(48796240-48796286)
chr3 (308-354)||(49088750-49088796)
chr3 (313-358)||(3100215-3100260)
chr3 (313-358)||(7868716-7868761)
chr3 (313-358)||(9856127-9856172)
chr3 (313-358)||(10498717-10498762)
chr3 (317-358)||(10617547-10617588)
chr3 (313-358)||(20537876-20537921)
chr3 (313-358)||(21331439-21331484)
chr3 (313-358)||(21628910-21628955)
chr3 (313-362)||(29631176-29631225)
chr3 (309-342)||(29817980-29818013)
chr3 (313-358)||(32629074-32629119)
chr3 (313-354)||(32836171-32836212)
chr3 (313-358)||(33745093-33745138)
chr3 (317-358)||(36170116-36170157)
chr3 (313-354)||(51379801-51379842)
chr3 (317-358)||(54796148-54796189)
chr3 (318-358)||(47040921-47040961)
[»] chr6 (32 HSPs)
chr6 (312-355)||(9581963-9582006)
chr6 (313-360)||(13496108-13496155)
chr6 (305-358)||(2445293-2445346)
chr6 (313-358)||(4494893-4494938)
chr6 (313-358)||(9444951-9444996)
chr6 (313-358)||(9677229-9677274)
chr6 (308-349)||(24827055-24827096)
chr6 (305-354)||(25934807-25934856)
chr6 (313-361)||(24167912-24167960)
chr6 (313-359)||(9392690-9392736)
chr6 (308-358)||(12204363-12204413)
chr6 (308-358)||(12329270-12329320)
chr6 (312-354)||(14350947-14350989)
chr6 (313-359)||(18256876-18256922)
chr6 (313-355)||(33938701-33938743)
chr6 (317-358)||(3054026-3054067)
chr6 (313-358)||(9111041-9111086)
chr6 (313-358)||(12256471-12256515)
chr6 (313-358)||(12333590-12333635)
chr6 (313-358)||(12735265-12735310)
chr6 (308-361)||(16890465-16890518)
chr6 (313-354)||(17935727-17935768)
chr6 (317-358)||(18313927-18313968)
chr6 (313-354)||(20847533-20847574)
chr6 (313-358)||(21296752-21296797)
chr6 (313-354)||(26320585-26320626)
chr6 (313-358)||(32053782-32053827)
chr6 (306-358)||(1030277-1030329)
chr6 (313-357)||(2931373-2931417)
chr6 (313-353)||(12904339-12904379)
chr6 (313-357)||(20744133-20744177)
chr6 (313-357)||(28951394-28951438)
[»] scaffold0160 (1 HSPs)
scaffold0160 (313-358)||(22905-22950)
[»] scaffold0011 (2 HSPs)
scaffold0011 (313-358)||(185257-185302)
scaffold0011 (313-359)||(223151-223197)
[»] scaffold0157 (1 HSPs)
scaffold0157 (313-357)||(18124-18168)
[»] scaffold0135 (1 HSPs)
scaffold0135 (306-350)||(32613-32657)
[»] scaffold0098 (1 HSPs)
scaffold0098 (313-360)||(5417-5464)
[»] scaffold0735 (1 HSPs)
scaffold0735 (313-359)||(1521-1567)
[»] scaffold0154 (1 HSPs)
scaffold0154 (313-355)||(37532-37574)
[»] scaffold0016 (1 HSPs)
scaffold0016 (308-358)||(204584-204634)
[»] scaffold0007 (1 HSPs)
scaffold0007 (316-354)||(244477-244515)
[»] scaffold0069 (1 HSPs)
scaffold0069 (313-358)||(50990-51035)
[»] scaffold0062 (1 HSPs)
scaffold0062 (306-355)||(7471-7520)
[»] scaffold0031 (1 HSPs)
scaffold0031 (313-354)||(47263-47304)


Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 49)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 17 - 519
Target Start/End: Complemental strand, 18789748 - 18789253
Alignment:
Q  17 cctttatggtttgaatggattaggttcttattgtgatgaattcaacatgtgcacttgtctatacaaaaaagaatcatcaacgtataattgtaatcttggg 116  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18789748 cctttatggtttgaatggattaggttcttattgtgatgacttcaacatgtgcacttgtttatacaaaaaagaatcatcaacgtataattgtaatcttggg 18789649  T
Q  117 ttgggagcatgcatcaagggtaactgtgattcagtttgttgcagtgcaagatgtgcttcaaaacttaaacattcttttgggacttgtactaatggtaatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18789648 ttgggagcatgcatcaagggtaactgtgattcagtttgttgcagtgcaagatgtgcttcaaaacttaaacattcttttgggtcttgtactaatggtaatc 18789549  T
Q  217 cggatagatgcatttgtcactatgtaccggagtagcttactcagattattattatatcgaaataaaagtttatgaatgaaattttcttaatcttatatat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||  ||||    
T  18789548 cggatagatgcatttgtcactatgtaccggagtagcttactcagattattattatatcgaaataaaag--tatgaatgaaattttcttaatcttgcatat 18789451  T
Q  317 tttatgcattgttcaaatcaactgagctaagctcacgaggacttaatcttgtaacttaaaaataccctaaagcaaaaactttaaaatttataggaactca 416  Q
     ||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||| ||||||||||     
T  18789450 attatgcattgtccaaaccaactgagttaagctcacgaggacttaatcttgtaacttaaaaa---cctaaagcaaaaactttaaaattaataggaactc- 18789355  T
Q  417 tatgctaaaagaaaacatgctctggcgaaaaaacaggcgatttgtcgctgttcacatatcaaattcgttttagctttcttcttcctaaggtaacccctgt 516  Q
     ||||||||||||||||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18789354 -atgctaaaagaaaacatgctctggcgaaaaaacgggcgatttgtcattgttcacttatcaaattcgttttagctttcttcttcctaaggtaacccctgt 18789256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 18779693 - 18779540
Alignment:
Q  35 attaggttcttattgtgatgaattcaacatgtgcacttgtctatacaaaaaagaatcatcaacgtataattgtaatcttgggttgggagcatgcatcaag 134  Q
    ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||    
T  18779693 attaggttctttttgtgatgactccaacatgtgcacttgtctatacaaaaaagaatcatcaacgtatagttgtaatatggggttgggagcatgcatcaag 18779594  T
Q  135 ggtaactgtgattcagtttgttgcagtgcaagatgtgcttcaaaacttaaacat 188  Q
    |||||||||||||||  |||||||| || |||||||||||||||| ||||||||    
T  18779593 ggtaactgtgattcaagttgttgcaatgtaagatgtgcttcaaaatttaaacat 18779540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 17736839 - 17736787
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||| ||||||||||||||||||| | ||||||||||||||||||||||||    
T  17736839 atcttacatattttatgcattgttcataccaactgagctaagctcacgaggac 17736787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 10109661 - 10109711
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacgagg 356  Q
    |||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  10109661 atcttacatattttatgcattgtccaaaccaactgagctaagctcacgagg 10109711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 7201546 - 7201501
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  7201546 atatattatgcattgttcaaaccaactgagctaagctcacgaggac 7201501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 43424698 - 43424653
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||    
T  43424698 atattttatgcattgttccaatcaactgagctaagctcatgaggac 43424653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 357
Target Start/End: Complemental strand, 19967452 - 19967413
Alignment:
Q  318 ttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  19967452 ttatgcattgttcatatcaactgagctaagctcacgagga 19967413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 346141 - 346191
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||| ||||||||| |||||| ||||||||||||||||||||||||    
T  346141 cttacatatattatgcattattcaaaccaactgagctaagctcacgaggac 346191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 358
Target Start/End: Original strand, 3752796 - 3752842
Alignment:
Q  312 tatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||||||| | |||| |||||||||||||||||||    
T  3752796 tatattttatgcattgttcataacaaccgagctaagctcacgaggac 3752842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 358
Target Start/End: Original strand, 27906245 - 27906286
Alignment:
Q  316 ttttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  27906245 ttttatgcattgttcaa-tcaactgagctaagctcacgaggac 27906286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 31582225 - 31582179
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    ||||| ||||||||||||||| ||||||||||||||||||| |||||    
T  31582225 atattctatgcattgttcaaaccaactgagctaagctcacgtggact 31582179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 32887398 - 32887356
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgag 355  Q
    |||||||||| ||||||| ||||||||||||||||||||||||    
T  32887398 atattttatgtattgttccaatcaactgagctaagctcacgag 32887356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 3196604 - 3196555
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||| |||| |||||||||||||| ||||||||||| |||||||||||||    
T  3196604 cttacatatattatgcattgttcatatcaactgagcaaagctcacgagga 3196555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 23718974 - 23718929
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||| |||||||||||||||||||||| |||||| ||||    
T  23718974 atattttatgcgttgttcaaatcaactgagctaaactcacgtggac 23718929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 24106646 - 24106601
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||| |||||||||||||||||||||| |||||| ||||    
T  24106646 atattttatgcgttgttcaaatcaactgagctaaactcacgtggac 24106601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 33064025 - 33063980
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| || ||||||||||||||||||||||||||    
T  33064025 atatattatgcattgtccatatcaactgagctaagctcacgaggac 33063980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 40365428 - 40365473
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || | ||||||||||||||||||||||||    
T  40365428 atattttatgcattgtacataccaactgagctaagctcacgaggac 40365473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 9517024 - 9517076
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||| ||||| |||||||||||||| | |||||||||||| |||||||||||    
T  9517024 atcttgtatatattatgcattgttcataccaactgagctaatctcacgaggac 9517076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 36193966 - 36194018
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggacttaatct 365  Q
    ||||||||||||||||||||| |||||||| |||  |||||||||| ||||||    
T  36193966 atattttatgcattgttcaaaccaactgaggtaacatcacgaggacataatct 36194018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 37132997 - 37133044
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgag 355  Q
    |||| |||||||||||||||| | || |||||||||||||||||||||    
T  37132997 cttacatattttatgcattgtcccaaccaactgagctaagctcacgag 37133044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 41187479 - 41187526
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    |||||||||||||||| || | ||||| ||||||||||||||||||||    
T  41187479 atattttatgcattgtccataccaactaagctaagctcacgaggactt 41187526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 5028900 - 5028850
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||| ||||||||||| | ||||||||||||||||||||| |||||    
T  5028900 cttacatatattatgcattgtcctaatcaactgagctaagctcaccaggac 5028850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Original strand, 9383231 - 9383277
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||| ||||||||||| || | |||||||||||||||||||||||||    
T  9383231 atatattatgcattgtccataccaactgagctaagctcacgaggact 9383277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Original strand, 9842224 - 9842270
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||||||||||||||| |  | |||||||||||||||||||||||||    
T  9842224 atattttatgcattgtccctaccaactgagctaagctcacgaggact 9842270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 365
Target Start/End: Original strand, 10735875 - 10735905
Alignment:
Q  335 caactgagctaagctcacgaggacttaatct 365  Q
    |||||||||||||||||||||||||||||||    
T  10735875 caactgagctaagctcacgaggacttaatct 10735905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 21929510 - 21929465
Alignment:
Q  312 tatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||    
T  21929510 tatattttatgcattgtccaac-caactgagctaagctcacgaggac 21929465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 22559017 - 22558971
Alignment:
Q  312 tatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||| |||| |||||||| ||| |||||||||||    
T  22559017 tatattttatgcattgtccaaaccaactgagttaaactcacgaggac 22558971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 29798534 - 29798584
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||||||||||||||| || | |||||||| |||||||||||||||    
T  29798534 cttaaatattttatgcattgtccataccaactgagttaagctcacgaggac 29798584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 44526162 - 44526120
Alignment:
Q  318 ttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    ||||||||||| || | ||||||||||||||||||||||||||    
T  44526162 ttatgcattgtccataccaactgagctaagctcacgaggactt 44526120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 1861831 - 1861876
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| || |||| |||||||||||||||||||||    
T  1861831 atatattatgcattgtccatatcagctgagctaagctcacgaggac 1861876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 4226988 - 4227037
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||| |||||||||||||||||| || ||| |||| ||||||||||||||    
T  4226988 cttacatattttatgcattgttccaaccaattgagttaagctcacgagga 4227037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 11551207 - 11551162
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||  ||||||||| |||||||||||| |||||    
T  11551207 atattttatgcattgtcgaaatcaactaagctaagctcacaaggac 11551162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 16221368 - 16221413
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||| | |||||||||||| |||| ||||||    
T  16221368 atattttatgcattgttcataccaactgagctaaactcatgaggac 16221413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 359
Target Start/End: Original strand, 17328029 - 17328074
Alignment:
Q  314 tattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    ||||||||||||||| | || | |||||||||||||||||||||||    
T  17328029 tattttatgcattgtcccaaccgactgagctaagctcacgaggact 17328074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 24305327 - 24305368
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||||||||||||||| || || |||||||||||||||||||    
T  24305327 atattttatgcattgtccatattaactgagctaagctcacga 24305368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 27244696 - 27244651
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| |  ||||||||||||||||||||||||||    
T  27244696 atatattatgcattgtccctatcaactgagctaagctcacgaggac 27244651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 29133506 - 29133551
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||| | |||||||||||| || ||||||||    
T  29133506 atattttatgcattgttcataccaactgagctaaacttacgaggac 29133551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 39688295 - 39688254
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    ||||||||| ||||||||||||||||| ||||||| ||||||    
T  39688295 atattttattcattgttcaaatcaactaagctaagttcacga 39688254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 42475132 - 42475177
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||| | | |||||||| |||||||||||||||    
T  42475132 atattttatgcattgtttataccaactgagttaagctcacgaggac 42475177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 42791334 - 42791289
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| ||| |||| ||||||||||||||||||||    
T  42791334 atatattatgcattgtccaagtcaagtgagctaagctcacgaggac 42791289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 6765654 - 6765602
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    |||| |||||||||||||||| || | ||||||||||||||| || |||||||    
T  6765654 cttacatattttatgcattgtccataccaactgagctaagcttacaaggactt 6765602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 7262852 - 7262804
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    ||||| ||||| ||||||||||| || ||||||||||||||| ||||||    
T  7262852 atcttgtatatattatgcattgtccatatcaactgagctaaggtcacga 7262804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 10195684 - 10195728
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||| ||||||||| | || |||||||||||||||||||||||||    
T  10195684 atatattatgcattatccatatcaactgagctaagctcacgagga 10195728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 10332297 - 10332341
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||| ||||||||||| |  |||||||||||||||||||||||||    
T  10332297 atatattatgcattgtccttatcaactgagctaagctcacgagga 10332341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 17413347 - 17413399
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||| |||||||||||||| ||| || |||||||| ||| |||||||||||    
T  17413347 atcttacatattttatgcattattccaaccaactgagttaaactcacgaggac 17413399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 34685991 - 34686027
Alignment:
Q  318 ttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  34685991 ttatgcattgtccaaaccaactgagctaagctcacga 34686027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 34708412 - 34708448
Alignment:
Q  318 ttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  34708412 ttatgcattgtccaaaccaactgagctaagctcacga 34708448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 40546355 - 40546311
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||| |||||||||||||  || ||||||||||||||||||||||    
T  40546355 atatattatgcattgttcttattaactgagctaagctcacgagga 40546311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 41778966 - 41779006
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacg 353  Q
    |||| ||||||||||| |||||||||||||||| |||||||    
T  41778966 atatattatgcattgtccaaatcaactgagctatgctcacg 41779006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 118863 - 118813
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  118863 cttacatattttatgcattgttcaaaccaactgagctaagctcacgaggac 118813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 9913946 - 9913893
Alignment:
Q  305 aatcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||| |||||||||||||||||||| | ||||||||||||||||||||||||    
T  9913946 aatcttgtatattttatgcattgttcataccaactgagctaagctcacgaggac 9913893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 313 - 359
Target Start/End: Original strand, 39171392 - 39171438
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||||||||||||||| || |||||||||||||||||||||||||||    
T  39171392 atattttatgcattgtccatatcaactgagctaagctcacgaggact 39171438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 4916202 - 4916149
Alignment:
Q  305 aatcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||| |||| |||||||||||||||| ||||||||||||| ||||||||||    
T  4916202 aatcttacatatattatgcattgttcaaaccaactgagctaagttcacgaggac 4916149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 35287529 - 35287574
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||    
T  35287529 atattttatgcattgttcataccaactgagctaagctcacgaggac 35287574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 43374294 - 43374339
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || ||||||||||||||||||||||||||    
T  43374294 atattttatgcattgtccatatcaactgagctaagctcacgaggac 43374339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 9539215 - 9539262
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    |||||||||||||||| || | ||||||||||||||||||||||||||    
T  9539215 atattttatgcattgtccataacaactgagctaagctcacgaggactt 9539262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 36059071 - 36059020
Alignment:
Q  309 ttatatattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    |||| |||||||||||||||||| | ||||||||||||| ||||||||||||    
T  36059071 ttatgtattttatgcattgttcataccaactgagctaagttcacgaggactt 36059020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 9946466 - 9946421
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || | ||||||||||||||||||||||||    
T  9946466 atattttatgcattgtccataccaactgagctaagctcacgaggac 9946421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 12698636 - 12698595
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  12698636 atatattatgcattgtccaaatcaactgagctaagctcacga 12698595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 35021489 - 35021534
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||    
T  35021489 atattttatgtattgtccatatcaactgagctaagctcacgaggac 35021534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 54859731 - 54859776
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||||||||||||||| |||| |||||||||||||||||||    
T  54859731 atatattatgcattgttcaaaccaaccgagctaagctcacgaggac 54859776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 56565005 - 56565050
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || ||||| ||||||||||||||||||||    
T  56565005 atattttatgcattgtccatatcaattgagctaagctcacgaggac 56565050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 9222004 - 9221960
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctc 350  Q
    |||||| |||| |||||||||||||||| ||||||||||||||||    
T  9222004 atcttacatatattatgcattgttcaaaccaactgagctaagctc 9221960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 12502309 - 12502353
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    ||||||| |||||||| |||||||||||||||||||| |||||||    
T  12502309 atattttctgcattgtccaaatcaactgagctaagctgacgagga 12502353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 32430138 - 32430190
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||| |||||||||||||||||||| |  ||||||| |||||||||||||||    
T  32430138 atcttgtatattttatgcattgttcatactaactgagttaagctcacgaggac 32430190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 35151503 - 35151455
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||||||||||||||||||||||| | || |||||||||||| ||||||    
T  35151503 atcttatatattttatgcattgtttatataaactgagctaagttcacga 35151455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 51848009 - 51847973
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgag 342  Q
    ||||| |||||||||||||||||||||||||||||||    
T  51848009 atcttgtatattttatgcattgttcaaatcaactgag 51847973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 16877280 - 16877241
Alignment:
Q  322 gcattgttcaaatcaactgagctaagctcacgaggactta 361  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  16877280 gcattgtcccaatcaactgagctaagctcacgaggactta 16877241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 1757014 - 1756968
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||||||||||||||| | ||| ||||||| ||||||||||||||||    
T  1757014 atattttatgcattgtcccaatgaactgagttaagctcacgaggact 1756968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 2932170 - 2932116
Alignment:
Q  305 aatcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    ||||||| |||| ||||||||||| |  |||||| ||||||||||||||||||||    
T  2932170 aatcttacatatattatgcattgtccctatcaacagagctaagctcacgaggact 2932116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 11198808 - 11198758
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||||||||||||| | || | ||||||||||||||||||||||||    
T  11198808 cttacatattttatgcattctccataccaactgagctaagctcacgaggac 11198758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 360
Target Start/End: Original strand, 12588855 - 12588909
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    ||||||||||||||||| |||||||| | |||||||| ||||  |||||||||||    
T  12588855 atcttatatattttatgtattgttcataccaactgagttaagaccacgaggactt 12588909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 14202496 - 14202546
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||| ||||||||| | ||||||||||||| |||||||||||||||    
T  14202496 cttacatatattatgcattatccaaatcaactgagttaagctcacgaggac 14202546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 360
Target Start/End: Original strand, 16432972 - 16433026
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    ||||||||||| |||||||||||  |  ||| |||||||||||||||||||||||    
T  16432972 atcttatatatattatgcattgtctatgtcagctgagctaagctcacgaggactt 16433026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 23154633 - 23154591
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgag 355  Q
    |||||||||||||||||  || |||||||||||||||||||||    
T  23154633 atattttatgcattgtttcaaccaactgagctaagctcacgag 23154591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 30780173 - 30780123
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||||| || | |||||||| |||||||||| ||||    
T  30780173 cttatatattttatgcattgtccataccaactgagttaagctcacgtggac 30780123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 41402267 - 41402217
Alignment:
Q  305 aatcttatatattttatgcattgttcaaatcaactgagctaagctcacgag 355  Q
    |||||| ||||||||||||||||||  ||||||||||  ||||||||||||    
T  41402267 aatcttgtatattttatgcattgttttaatcaactgacttaagctcacgag 41402217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 241406 - 241451
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||| | |||| |||||||||| ||||||||    
T  241406 atattttatgcattgttcataccaaccgagctaagcttacgaggac 241451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 2186355 - 2186400
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| || | ||||||||||||||||||||||||    
T  2186355 atatattatgcattgtccataccaactgagctaagctcacgaggac 2186400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 8020669 - 8020714
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| |||| ||||||||||| ||||||||||||    
T  8020669 atatattatgcattgtccaaaccaactgagctatgctcacgaggac 8020714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 10303533 - 10303578
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| |  | ||||||||||||||||||||||||    
T  10303533 atattttatgcattgtccttaccaactgagctaagctcacgaggac 10303578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 10401418 - 10401463
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||| ||||||||||||| | ||||||| ||||||||||||||||    
T  10401418 atattgtatgcattgttcataccaactgaactaagctcacgaggac 10401463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 11949684 - 11949729
Alignment:
Q  312 tatattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    ||||| ||||| |||||||  |||||||||||||||||||||||||    
T  11949684 tatatattatgtattgttcttatcaactgagctaagctcacgagga 11949729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 12757310 - 12757359
Alignment:
Q  305 aatcttatatattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    ||||||| |||||||||||||||| | ||| ||||||| |||||||||||    
T  12757310 aatcttacatattttatgcattgtcctaatgaactgagttaagctcacga 12757359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 15849273 - 15849228
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||| | || | ||||||||||||||||||||||||    
T  15849273 atattttatgcattatccataccaactgagctaagctcacgaggac 15849228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 19479499 - 19479544
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||||||||||||| || ||||||||||||||||| |||||    
T  19479499 atatattatgcattgttcatattaactgagctaagctcacaaggac 19479544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 19588193 - 19588148
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||    
T  19588193 atattttatgcattgtccataccaattgagctaagctcacgaggac 19588148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 32180869 - 32180824
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||  | | ||||||||||||||||||||||||    
T  32180869 atattttatgcattgtctataccaactgagctaagctcacgaggac 32180824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 36203275 - 36203230
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| |  ||||||||||||||||||||||||||    
T  36203275 atatattatgcattgtccttatcaactgagctaagctcacgaggac 36203230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 39606589 - 39606633
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||| ||||||||||  ||||||||||||||||||||||||    
T  39606589 atattttatacattgttcaac-caactgagctaagctcacgaggac 39606633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 50774620 - 50774567
Alignment:
Q  305 aatcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||| ||||||||||| |||||| | | ||| ||||||||||||||||||||    
T  50774620 aatcttgtatattttatgtattgtttataccaattgagctaagctcacgaggac 50774567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 52270052 - 52270097
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| || | ||||||||||||||||||||||||    
T  52270052 atatattatgcattgtccataccaactgagctaagctcacgaggac 52270097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 53468593 - 53468638
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||| | ||| ||||||| ||||||||||||    
T  53468593 atattttatgcattgttcataccaattgagctatgctcacgaggac 53468638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 54857637 - 54857682
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||| | | |||| |||||||||||||||||||    
T  54857637 atattttatgcattgtttataccaaccgagctaagctcacgaggac 54857682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 55421591 - 55421632
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||| ||||||||||| |||| ||||||||||||||||||||    
T  55421591 atatattatgcattgtccaaaccaactgagctaagctcacga 55421632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 2448193 - 2448141
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    |||| |||||||||| |||||||| | ||||||| ||||| ||||||||||||    
T  2448193 cttacatattttatgtattgttcataccaactgaactaagttcacgaggactt 2448141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 19935188 - 19935228
Alignment:
Q  318 ttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||  |||||||||||||| |||||||||||    
T  19935188 ttatgcattgttcttatcaactgagctaaactcacgaggac 19935228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 23809988 - 23809940
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggactta 361  Q
    |||| |||||| |||| || | |||||||||||||||||||||||||||    
T  23809988 atatattatgctttgtccataccaactgagctaagctcacgaggactta 23809940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 32923247 - 32923299
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    |||| |||| |||||||||||||| | |||||||| |||||||||||| ||||    
T  32923247 cttacatatattatgcattgttcataccaactgagttaagctcacgagaactt 32923299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 52132324 - 52132368
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||| ||||||||||| |||| ||||||||||| |||||||||||    
T  52132324 atatattatgcattgtccaaaccaactgagctatgctcacgagga 52132368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 22619920 - 22619869
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    ||||| |||||||||||||||||||| | |||||||||||||||||||||||    
T  22619920 atcttgtatattttatgcattgttcataccaactgagctaagctcacgagga 22619869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 40730213 - 40730263
Alignment:
Q  309 ttatatattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||||||| |||||||||||||| ||||||| |||||||||||||||||||    
T  40730213 ttatatatattatgcattgttcatatcaacttagctaagctcacgaggact 40730263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 10199063 - 10199013
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||| ||||||||||| || | ||||||||||||||||||||||||    
T  10199063 cttatatatattatgcattgtccataccaactgagctaagctcacgaggac 10199013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 24498628 - 24498578
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||||||||||||| |||| |||||||||| |||||||||||||||    
T  24498628 cttacatattttatgcattattcatatcaactgagttaagctcacgaggac 24498578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 35270703 - 35270753
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggacttaat 363  Q
    |||||||||||||||| | || |||||||||||||||||||||||| ||||    
T  35270703 atattttatgcattgtcccaaccaactgagctaagctcacgaggacataat 35270753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 359
Target Start/End: Original strand, 42613226 - 42613272
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||||||||||||||| |||||||| ||| |||||||||||||||||    
T  42613226 atattttatgcattgtccaaatcaattgaactaagctcacgaggact 42613272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 363
Target Start/End: Complemental strand, 3630701 - 3630648
Alignment:
Q  310 tatatattttatgcattgttcaaatcaactgagctaagctcacgaggacttaat 363  Q
    ||||||||||||  ||||||| || |||||||||||||||||||||||| ||||    
T  3630701 tatatattttatatattgttccaaccaactgagctaagctcacgaggacctaat 3630648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 5551303 - 5551348
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||    
T  5551303 atattttatgcattgttccaaccaactgagctaagctcatgaggac 5551348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 7336341 - 7336382
Alignment:
Q  317 tttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  7336341 tttatgcattgttcctatcaactgagctaagctcacgaggac 7336382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 8410467 - 8410512
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||    
T  8410467 atattttatgcattgttcacactaactgagctaagctcacgaggac 8410512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 8543615 - 8543570
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| |||| |||||||| |||||||||||||||    
T  8543615 atattttatgcattgtccaaaccaactgagttaagctcacgaggac 8543570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 9584646 - 9584597
Alignment:
Q  305 aatcttatatattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    ||||||| |||||||||||||||||| ||||||||||| ||| |||||||    
T  9584646 aatcttacatattttatgcattgttccaatcaactgagttaaactcacga 9584597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 22585695 - 22585646
Alignment:
Q  309 ttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||| |||||||||||||| |||||||||| ||||| |||||||||    
T  22585695 ttatatatattatgcattgttcatatcaactgagttaagcccacgaggac 22585646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 28207171 - 28207126
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || | ||||||||||||||||||||||||    
T  28207171 atattttatgcattgtccataccaactgagctaagctcacgaggac 28207126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 34191472 - 34191427
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| | || ||||||||||||||||||||||||    
T  34191472 atattttatgcattgtcccaaccaactgagctaagctcacgaggac 34191427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 42473933 - 42473888
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||||| |||||| ||||||||||||||||||||    
T  42473933 atatattatgcattgttccaatcaattgagctaagctcacgaggac 42473888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 10704353 - 10704400
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    |||||||||||||||| || | |||||||||||||||||| |||||||    
T  10704353 atattttatgcattgtccataccaactgagctaagctcacaaggactt 10704400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 22394081 - 22394034
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacg 353  Q
    |||||| |||| ||||||||||| || |||||||||||||||||||||    
T  22394081 atcttacatatattatgcattgtccatatcaactgagctaagctcacg 22394034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 40715971 - 40716018
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    |||| ||||||||||| || ||||| ||||||||||||||||||||||    
T  40715971 atatattatgcattgtccatatcaattgagctaagctcacgaggactt 40716018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 14880452 - 14880406
Alignment:
Q  312 tatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||| ||||||||||| | |||||||| |||||||||||||||    
T  14880452 tatattttctgcattgttcataccaactgagttaagctcacgaggac 14880406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Original strand, 18589889 - 18589935
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||| |||||||||||||| | |||||||| ||||||||||||||||    
T  18589889 atatattatgcattgttcataccaactgagttaagctcacgaggact 18589935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 20718969 - 20719015
Alignment:
Q  305 aatcttatatattttatgcattgttcaaatcaactgagctaagctca 351  Q
    |||||||| ||| |||||||||||  |||||||||||||||||||||    
T  20718969 aatcttatgtatattatgcattgtctaaatcaactgagctaagctca 20719015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 30488965 - 30488923
Alignment:
Q  312 tatattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||    
T  30488965 tatatattatgcattgttcatatcaactgaactaagctcacga 30488923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 32559348 - 32559298
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  32559348 cttacatattttatgcattgtcaatatcaattgagctaagctcacgaggac 32559298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 39610363 - 39610405
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgag 355  Q
    |||| ||||||||||| || |||||||||||||||||||||||    
T  39610363 atatattatgcattgtccatatcaactgagctaagctcacgag 39610405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 2839837 - 2839792
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||| | |||| ||||||||||||||||||||||||    
T  2839837 atatattatgcattatccaaaccaactgagctaagctcacgaggac 2839792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 10359619 - 10359664
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||| |||||||||||| | ||||||||||||| ||||||||||    
T  10359619 atatttaatgcattgttcataccaactgagctaagttcacgaggac 10359664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 11637594 - 11637639
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || | |||||||| |||||||||||||||    
T  11637594 atattttatgcattgtccataccaactgagttaagctcacgaggac 11637639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 16193151 - 16193102
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||| ||||||||||||||||||| | ||||||| |||| ||||||||||    
T  16193151 cttacatattttatgcattgttcataccaactgaactaaactcacgagga 16193102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 17708113 - 17708068
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || |||||||||| || ||||||||||||    
T  17708113 atattttatgcattgtccatatcaactgagttatgctcacgaggac 17708068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 18041297 - 18041338
Alignment:
Q  317 tttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||  ||||| ||||||||||||||||||||    
T  18041297 tttatgcattgttcctatcaattgagctaagctcacgaggac 18041338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 24408534 - 24408489
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||||||| || |||| ||||||||||||||||||||||||    
T  24408534 atatattatgcatcgtccaaaccaactgagctaagctcacgaggac 24408489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 27721697 - 27721742
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||||||||||||  | ||||||||||||||||||||||||    
T  27721697 atatattatgcattgttcctaccaactgagctaagctcacgaggac 27721742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 32858709 - 32858664
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || | |||| |||||||||||||||||||    
T  32858709 atattttatgcattgtccataccaacggagctaagctcacgaggac 32858664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 37932369 - 37932324
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| || | ||||||||||||||||||||||||    
T  37932369 atatattatgcattgtccataccaactgagctaagctcacgaggac 37932324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 4040401 - 4040449
Alignment:
Q  305 aatcttatatattttatgcattgttcaaatcaactgagctaagctcacg 353  Q
    |||||| ||||||||||||||||||  || ||||||| |||||||||||    
T  4040401 aatcttgtatattttatgcattgtttcaaccaactgatctaagctcacg 4040449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 12165272 - 12165232
Alignment:
Q  318 ttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||| | || |||||||||||||||||||||    
T  12165272 ttatgcattgttcataccacctgagctaagctcacgaggac 12165232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 17426256 - 17426208
Alignment:
Q  314 tattttatgcattgttcaaatcaactgagctaagctcacgaggacttaa 362  Q
    ||||||| ||||| | || |||||||||||||||||||||| |||||||    
T  17426256 tattttacgcattttccatatcaactgagctaagctcacgaagacttaa 17426208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 20175772 - 20175720
Alignment:
Q  305 aatcttatatattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||||| ||||| |||| |||||| || | |||||||||||||||||||||||    
T  20175772 aatcttgtatatattatacattgtccataccaactgagctaagctcacgagga 20175720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 24485738 - 24485690
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggactta 361  Q
    |||| ||||||||||| || | ||||| |||||||||||||||||||||    
T  24485738 atatattatgcattgtccataccaactaagctaagctcacgaggactta 24485690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 27174867 - 27174819
Alignment:
Q  312 tatattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    ||||||||||||||||| |    ||||||||||||||||||||||||||    
T  27174867 tatattttatgcattgtccttgccaactgagctaagctcacgaggactt 27174819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 1293 - 1247
Alignment:
Q  312 tatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  1293 tatattttatgcattgttcaaaccaactaagctaagctcacgaggac 1247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 5526772 - 5526718
Alignment:
Q  305 aatcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||||||||||| ||||||||||| || | |||||||||||||||||||||||||    
T  5526772 aatcttatatatattatgcattgtccataccaactgagctaagctcacgaggact 5526718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 44819515 - 44819556
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  44819515 atattttatgcattgttctaatcaactgagctaagctcacga 44819556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 46207799 - 46207754
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||    
T  46207799 atattttatgcattgttcataccaactgagctaagctcacgaggac 46207754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 47589575 - 47589620
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||    
T  47589575 atattttatgcattgttcataccaactgagctaagctcacgaggac 47589620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 18378441 - 18378395
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||||||||||||||| | || |||||||||||||||||||||||||    
T  18378441 atattttatgcattgtcccaaccaactgagctaagctcacgaggact 18378395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 6023348 - 6023303
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||||    
T  6023348 atattttaagcattgtccaaaccaactgagctaagctcacgaggac 6023303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 7670473 - 7670432
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||| |||||||||||||||| ||||||||||||||||||||    
T  7670473 atatattatgcattgttcaaaccaactgagctaagctcacga 7670432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 10026033 - 10025988
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| |||| |||||||| |||||||||||||||    
T  10026033 atattttatgcattgtccaaaccaactgagttaagctcacgaggac 10025988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 13955519 - 13955474
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||| | ||||||||||||||||||| ||||    
T  13955519 atattttatgcattgttcataccaactgagctaagctcacgcggac 13955474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 19416553 - 19416508
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || | ||||||||||||||||||||||||    
T  19416553 atattttatgcattgtccataccaactgagctaagctcacgaggac 19416508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 27993051 - 27993096
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||| | |||||||| |||||||||||||||    
T  27993051 atattttatgcattgttcataccaactgagttaagctcacgaggac 27993096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 35103535 - 35103490
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| | || ||||||||||||||||||||||||    
T  35103535 atattttatgcattgtcccaaccaactgagctaagctcacgaggac 35103490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 35142171 - 35142216
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| || ||||||||||||||||||||||||||    
T  35142171 atatattatgcattgtccatatcaactgagctaagctcacgaggac 35142216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 41132483 - 41132438
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||    
T  41132483 atattttatgtattgttcaaatcaattgagctaagctcacgtggac 41132438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 47677599 - 47677644
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||||| || |||||||||||| |||||||||||    
T  47677599 atattttatgcattgttctaaccaactgagctaaactcacgaggac 47677644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 40808181 - 40808228
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    |||||||||||| ||| |||| |||||||| |||||||||||||||||    
T  40808181 atattttatgcactgtccaaaccaactgagttaagctcacgaggactt 40808228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 48069854 - 48069901
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgag 355  Q
    |||| |||| ||||||||||||||  ||||||||||||||||||||||    
T  48069854 cttacatatattatgcattgttcatgtcaactgagctaagctcacgag 48069901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Original strand, 580948 - 580994
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||||||||||||||| || | |||| ||||||||||||||||||||    
T  580948 atattttatgcattgtccataccaaccgagctaagctcacgaggact 580994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 5458093 - 5458135
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgag 355  Q
    |||| |||||||||||||  |||||||||||||||||||||||    
T  5458093 atatattatgcattgttcttatcaactgagctaagctcacgag 5458135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 10244766 - 10244720
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||| ||||||||||| || | |||||||||||||||||||||||||    
T  10244766 atatattatgcattgtccataccaactgagctaagctcacgaggact 10244720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 21993221 - 21993175
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||||||||||||||| || | |||||||| ||||||||||||||||    
T  21993221 atattttatgcattgtccataccaactgagttaagctcacgaggact 21993175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 358
Target Start/End: Complemental strand, 30781488 - 30781446
Alignment:
Q  316 ttttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||  | ||||||||||||||||||||||||||    
T  30781488 ttttatgcattgtctatatcaactgagctaagctcacgaggac 30781446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 34448627 - 34448677
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||| ||||||||||| |||| |||||||| |||||||||||||||    
T  34448627 cttacatatattatgcattgtccaaaccaactgagttaagctcacgaggac 34448677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 358
Target Start/End: Original strand, 36341086 - 36341132
Alignment:
Q  312 tatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||||||| | |||||||| |||||||| ||||||    
T  36341086 tatattttatgcattgttcataccaactgagttaagctcaagaggac 36341132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 358
Target Start/End: Complemental strand, 38728244 - 38728202
Alignment:
Q  316 ttttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||| || | ||||||||||||||||||||||||    
T  38728244 ttttatgcattgtccataccaactgagctaagctcacgaggac 38728202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 39801745 - 39801699
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||| ||||||||||| || | |||||||||||||||||||||||||    
T  39801745 atatattatgcattgtccataccaactgagctaagctcacgaggact 39801699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 43539121 - 43539171
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||| |||||||||||||  |||||||||||||||||||| |||||    
T  43539121 cttacatatattatgcattgttcctatcaactgagctaagctcacaaggac 43539171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 48980527 - 48980481
Alignment:
Q  312 tatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||| ||||||||||| || | ||||||||||||||||||||||||    
T  48980527 tatatattatgcattgtccataccaactgagctaagctcacgaggac 48980481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 1079714 - 1079759
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||||| ||  ||||||| |||||||||||||||    
T  1079714 atattttatgcattgttccaactaactgagttaagctcacgaggac 1079759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 4491142 - 4491183
Alignment:
Q  317 tttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||   ||||||||||||||||||||||||||    
T  4491142 tttatgcattgttactatcaactgagctaagctcacgaggac 4491183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 4905315 - 4905270
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || | |||||||| |||||||||||||||    
T  4905315 atattttatgcattgtccacaacaactgagttaagctcacgaggac 4905270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 19626547 - 19626592
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| |||| |||||||| |||||||||||||||    
T  19626547 atatattatgcattgtccaaaccaactgagttaagctcacgaggac 19626592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 23198771 - 23198816
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||| | |||||||| ||| |||||||||||    
T  23198771 atattttatgcattgttcataccaactgagttaaactcacgaggac 23198816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 24027081 - 24027118
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctc 350  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  24027081 atattttatgcattgttccaatcaactaagctaagctc 24027118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 26825413 - 26825466
Alignment:
Q  307 tcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    ||||| |||| ||||||||||| || ||||| |||| |||||||||||||||||    
T  26825413 tcttaaatatattatgcattgtccatatcaattgaggtaagctcacgaggactt 26825466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 46737824 - 46737779
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| ||||  |||||||||||||||||||||||    
T  46737824 atatattatgcattgtccaaacaaactgagctaagctcacgaggac 46737779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 47342716 - 47342671
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || | ||||||||||||| ||||||||||    
T  47342716 atattttatgcattgtccataccaactgagctaagttcacgaggac 47342671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 48103696 - 48103741
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| | || |||||||| |||||||||||||||    
T  48103696 atattttatgcattgtcccaaccaactgagttaagctcacgaggac 48103741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 964756 - 964808
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||| ||||||||||||   ||| |||||| |||||||||||||||    
T  964756 atcttatatatattatgcattgtttctatcgactgagttaagctcacgaggac 964808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 2622372 - 2622320
Alignment:
Q  305 aatcttatatattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    ||||||| |||| ||||| |||||||  ||||||| |||||||||||||||||    
T  2622372 aatcttacatatattatgtattgttcctatcaactaagctaagctcacgagga 2622320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 3536271 - 3536323
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    |||| |||| ||||||||||||| || |||||||||| |||||||||| ||||    
T  3536271 cttacatatattatgcattgttccaaccaactgagcttagctcacgagaactt 3536323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 358
Target Start/End: Complemental strand, 14786153 - 14786117
Alignment:
Q  322 gcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||| | ||||||||||||||||||||||||    
T  14786153 gcattgttcataccaactgagctaagctcacgaggac 14786117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 20243289 - 20243249
Alignment:
Q  318 ttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||| || | ||||||||||||||||||||||||    
T  20243289 ttatgcattgtccataccaactgagctaagctcacgaggac 20243249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 30468021 - 30467981
Alignment:
Q  312 tatattttatgcattgttcaaatcaactgagctaagctcac 352  Q
    ||||| |||||||||||||||| |||||||| |||||||||    
T  30468021 tatatattatgcattgttcaaaccaactgagttaagctcac 30467981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 48)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 13590154 - 13590104
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||||||||||||||| |||| ||||||||||||||||||||||||    
T  13590154 cttacatattttatgcattgtccaaaccaactgagctaagctcacgaggac 13590104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 41032971 - 41032925
Alignment:
Q  312 tatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||    
T  41032971 tatattttatgcattgttcatatcaactgagttaagctcacgaggac 41032925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 13673584 - 13673539
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  13673584 atattttatgcattgttcaaaccaaccgagctaagctcacgaggac 13673539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 20481135 - 20481094
Alignment:
Q  317 tttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  20481135 tttatgcattgttcaaaccaactgagctaagctcacgaggac 20481094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 26834559 - 26834514
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||    
T  26834559 atattttatgcatcgttcatatcaactgagctaagctcacgaggac 26834514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 23334627 - 23334579
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggactta 361  Q
    |||||||||||||||| ||||||| ||||| ||||||||||||||||||    
T  23334627 atattttatgcattgtccaaatcagctgagttaagctcacgaggactta 23334579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 7550936 - 7550894
Alignment:
Q  312 tatattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||||||||||||||||||| |||||||||| |||||||||||    
T  7550936 tatattttatgcattgttcatatcaactgagttaagctcacga 7550894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 358
Target Start/End: Complemental strand, 39452496 - 39452454
Alignment:
Q  316 ttttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| | ||||||||||||||||||||||||    
T  39452496 ttttatgcattgttcataccaactgagctaagctcacgaggac 39452454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 2613766 - 2613717
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||| |||||||||||||||| || | |||||||||||||||||||||||    
T  2613766 cttacatattttatgcattgtccataccaactgagctaagctcacgagga 2613717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 9528036 - 9527991
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||| |||||||||||||| | ||||||||||||||||||    
T  9528036 atattttatgtattgttcaaatcaatttagctaagctcacgaggac 9527991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 16826393 - 16826348
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || | ||||||||||||||||||||||||    
T  16826393 atattttatgcattgtccatagcaactgagctaagctcacgaggac 16826348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 23524863 - 23524818
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||    
T  23524863 atattttatgcattgttccaatcaactgagttaagctcacaaggac 23524818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 44860905 - 44860950
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||    
T  44860905 atattttatgcattgtccaaaccaactgagctaagttcacgaggac 44860950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 48681955 - 48682000
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||    
T  48681955 atatattatgcattgttcataccaactgagctaagctcacgaggac 48682000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 27853401 - 27853349
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||| ||||| |||||||||||||| | |||||||| |||||||||||||||    
T  27853401 atcttgtatatattatgcattgttcataccaactgagttaagctcacgaggac 27853349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 43840340 - 43840392
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||| |||||||||||||||| || |||||||||| ||| |||||||||||    
T  43840340 atcttacatattttatgcattgtccatatcaactgagttaaactcacgaggac 43840392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 7158812 - 7158765
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    |||||||||||||||| || |||||||| ||||| |||||||||||||    
T  7158812 atattttatgcattgtccatatcaactgggctaaactcacgaggactt 7158765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 15668537 - 15668490
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    |||||||||||||||||| || |||||||| |||| ||||||||||||    
T  15668537 atattttatgcattgttccaaccaactgagttaagatcacgaggactt 15668490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 25086522 - 25086475
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    |||||||||||||||| || | |||||||||||||||||| |||||||    
T  25086522 atattttatgcattgtccataccaactgagctaagctcacaaggactt 25086475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 4770645 - 4770695
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||| | |||||||||||| |||||||||| ||||||||| |||||    
T  4770645 cttatatatatcatgcattgttcatatcaactgagttaagctcacaaggac 4770695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 23203361 - 23203323
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctca 351  Q
    |||||||||||||||||| || |||||||||||||||||    
T  23203361 atattttatgcattgttccaaccaactgagctaagctca 23203323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 26755648 - 26755610
Alignment:
Q  320 atgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  26755648 atgcattgtccatatcaactgagctaagctcacgaggac 26755610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 35308225 - 35308179
Alignment:
Q  312 tatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||| |||||||||||||| | ||||||| ||||||||||||||||    
T  35308225 tatatattatgcattgttcataccaactgaactaagctcacgaggac 35308179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 42888614 - 42888568
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||||||||||||||| || | ||||||||||||||||||| |||||    
T  42888614 atattttatgcattgtccataccaactgagctaagctcacgtggact 42888568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 44641566 - 44641520
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||| ||||||||||| || |||||||||||||| ||||||||||||    
T  44641566 atatattatgcattgtccatatcaactgagctaaactcacgaggact 44641520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 354
Target Start/End: Complemental strand, 45701372 - 45701326
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||| ||||||||||||||||||| | |||||||||||| |||||||    
T  45701372 cttacatattttatgcattgttcataccaactgagctaaactcacga 45701326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 49843478 - 49843428
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||| |||||||||||||||| ||| |||| |||||||||||||||    
T  49843478 cttacatatattatgcattgttcaaaccaattgagttaagctcacgaggac 49843428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 2884463 - 2884516
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    ||||| ||||| ||||||||||| || |||||||||| |||| |||||||||||    
T  2884463 atcttgtatatattatgcattgtccatatcaactgagttaaggtcacgaggact 2884516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 3157738 - 3157783
Alignment:
Q  312 tatattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    ||||| ||||||||||||||||  || |||||||||||||||||||    
T  3157738 tatatattatgcattgttcaaactaattgagctaagctcacgagga 3157783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 7732461 - 7732416
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||| | ||||||||||||||||| |||||||||||    
T  7732461 atatattatgcattatccaaatcaactgagctaaactcacgaggac 7732416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 20371881 - 20371836
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||||| |||| ||| ||||||||| |||||    
T  20371881 atattttatgcattgttcaaaccaacggagttaagctcacaaggac 20371836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 21965918 - 21965959
Alignment:
Q  317 tttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||| |||| |||||||||||||||||||| |||||    
T  21965918 tttatgcattattcatatcaactgagctaagctcacaaggac 21965959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 27449467 - 27449512
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| || || |||||||||||||||||||||||    
T  27449467 atatattatgcattgtccatattaactgagctaagctcacgaggac 27449512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 32433112 - 32433157
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacg 353  Q
    ||||||||||||||||||| |||| ||| |||||| ||||||||||    
T  32433112 cttatatattttatgcatttttcatatcgactgagttaagctcacg 32433157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 41769837 - 41769882
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||| | |||| ||||||||||||||||||||||||    
T  41769837 atatattatgcattatccaaaccaactgagctaagctcacgaggac 41769882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 42045394 - 42045439
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| || | ||||||||||||||||||||||||    
T  42045394 atatattatgcattgtccataccaactgagctaagctcacgaggac 42045439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 48100761 - 48100716
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || | |||||||||||||||||| |||||    
T  48100761 atattttatgcattgtccataccaactgagctaagctcacaaggac 48100716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 50595905 - 50595946
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    ||||||||||||||||||| | ||| ||||||||||||||||    
T  50595905 atattttatgcattgttcataccaattgagctaagctcacga 50595946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 51127907 - 51127956
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    ||||||||| ||||||||||| || || ||||||||||| ||||||||||    
T  51127907 cttatatatattatgcattgtccatattaactgagctaaactcacgagga 51127956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 8551454 - 8551493
Alignment:
Q  317 tttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  8551454 tttatgcattgtccaa-tcaactgagctaagctcacgagga 8551493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 10841944 - 10841900
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcac 352  Q
    ||||||||| ||||||||||| || |||||||||| |||||||||    
T  10841944 cttatatatattatgcattgtccatatcaactgagttaagctcac 10841900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 14520983 - 14520943
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacg 353  Q
    |||||||||||||||| || | |||||||||||||||||||    
T  14520983 atattttatgcattgtccataccaactgagctaagctcacg 14520943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 16475671 - 16475715
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcac 352  Q
    |||| |||||||||||||||| | ||||||||||| |||||||||    
T  16475671 cttacatattttatgcattgtcctaatcaactgaggtaagctcac 16475715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 17917155 - 17917199
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcac 352  Q
    |||| |||||||||||||||| || |||||||||||||| |||||    
T  17917155 cttacatattttatgcattgtccatatcaactgagctaaactcac 17917199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 24752675 - 24752715
Alignment:
Q  318 ttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||| || | ||||||||||||||||||||||||    
T  24752675 ttatgcattgtccataccaactgagctaagctcacgaggac 24752715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 35632943 - 35632891
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    ||||||||| ||||||||||| || |||||||||  |||||| ||||||||||    
T  35632943 cttatatatattatgcattgtccatatcaactgaaataagctaacgaggactt 35632891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 47340826 - 47340782
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||||||||||||||| | || |||||||||||||||||| ||||    
T  47340826 atattttatgcattgtcccaaccaactgagctaagctcacaagga 47340782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 50040395 - 50040351
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||||||||||||||| | || ||||||||||||| |||||||||    
T  50040395 atattttatgcattgtcccaaccaactgagctaagttcacgagga 50040351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 17769 - 17724
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacg 353  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  17769 cttatatatattatgcattgtccaaatcaactgagctaagctcacg 17724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 171198 - 171153
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  171198 atattttatgcattgttcaaaccaaccgagctaagctcacgaggac 171153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 208986 - 208936
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||  ||||||||||| |||| ||||||||||||||||||||||||    
T  208986 cttatatacattatgcattgtccaaaccaactgagctaagctcacgaggac 208936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 223699 - 223740
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||| ||||||||||||||||  |||||||||||||||||||    
T  223699 atatattatgcattgttcaaactaactgagctaagctcacga 223740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 39433449 - 39433404
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||    
T  39433449 atattttatgtattgttcatatcaactgagctaagctcacgaggac 39433404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 6314345 - 6314393
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggactta 361  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||||    
T  6314345 atattttatgcattgtccttatcaactgagctaagctcacgaggactta 6314393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 18148821 - 18148871
Alignment:
Q  310 tatatattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    ||||||| |||||||||||||| || ||||||| |||||||||||||||||    
T  18148821 tatatatattatgcattgttcatattaactgagttaagctcacgaggactt 18148871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 33105430 - 33105384
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||| |||||||||||||||| || ||||||||||||||||||||||    
T  33105430 atatattatgcattgttcaaaccagctgagctaagctcacgaggact 33105384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 14975885 - 14975930
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||| |||||| | ||||||||||||||||||||||||    
T  14975885 atattttatgcactgttcataccaactgagctaagctcacgaggac 14975930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 16907621 - 16907576
Alignment:
Q  310 tatatattttatgcattgttcaaatcaactgagctaagctcacgag 355  Q
    ||||||| ||||||||||||||||||||||||| ||| ||||||||    
T  16907621 tatatatattatgcattgttcaaatcaactgagttaaactcacgag 16907576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 24023437 - 24023482
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||||| ||  |||||||||||||||||||||||    
T  24023437 atattttatgcattgttccaactaactgagctaagctcacgaggac 24023482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 26885653 - 26885702
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacgag 355  Q
    |||||| ||||||||||||||||||| | |||||||||||| ||||||||    
T  26885653 atcttacatattttatgcattgttcataccaactgagctaaactcacgag 26885702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 27718916 - 27718961
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| || ||||||||||||||||||||||||||    
T  27718916 atatattatgcattgtccatatcaactgagctaagctcacgaggac 27718961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 358
Target Start/End: Original strand, 32232391 - 32232444
Alignment:
Q  305 aatcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||| |||||||||||||| ||||| | | ||||||||||||||||    
T  32232391 aatcttatatatattatgcattgttcatatcaattaacctaagctcacgaggac 32232444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 5728577 - 5728533
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||| |||||||||||||  |||||||||||||||||||||||||    
T  5728577 atatattatgcattgttctcatcaactgagctaagctcacgagga 5728533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 31085891 - 31085931
Alignment:
Q  318 ttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||| ||||||||||||||||||||||||||    
T  31085891 ttatacattgttcatatcaactgagctaagctcacgaggac 31085931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 37750021 - 37750068
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    |||| |||||||||||||| |||||||||||||| |||||||| ||||    
T  37750021 atatattatgcattgttcatatcaactgagctaaactcacgagaactt 37750068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 44665763 - 44665814
Alignment:
Q  305 aatcttatatattttatgcattgttcaaatcaactgagctaagctcacgagg 356  Q
    |||||||||||||||| |||||||||  | ||| ||||||||||||||||||    
T  44665763 aatcttatatattttacgcattgttcgtaccaaatgagctaagctcacgagg 44665814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 354
Target Start/End: Original strand, 1644690 - 1644736
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||| ||||||||||||||| ||| | ||||||||||||||||||||    
T  1644690 cttacatattttatgcattgctcataccaactgagctaagctcacga 1644736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Original strand, 2554234 - 2554280
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||||||||| ||||| || |||||||||||||||||||| ||||||    
T  2554234 atattttatgtattgtccatatcaactgagctaagctcacaaggact 2554280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 16340370 - 16340320
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| |||||| || ||||||| ||||||||||||||||    
T  16340370 cttacatattttatgcgttgttccaaccaactgaactaagctcacgaggac 16340320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 33445610 - 33445564
Alignment:
Q  312 tatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||| |||||||||||||  | ||||||||||||||||||||||||    
T  33445610 tatatattatgcattgttcctaccaactgagctaagctcacgaggac 33445564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 39139015 - 39139065
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||||||||||||| || ||| ||||||||||||||||||| ||||    
T  39139015 cttacatattttatgcattattaaaaccaactgagctaagctcacgtggac 39139065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Original strand, 44084293 - 44084339
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||| ||||||||||||| ||||||||||||| | ||||||||||||    
T  44084293 atatattatgcattgttctaatcaactgagcttaactcacgaggact 44084339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 1764976 - 1765017
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    ||||||||||| ||||||| |||||||||| |||||||||||    
T  1764976 atattttatgcgttgttcatatcaactgagttaagctcacga 1765017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 5325529 - 5325574
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||   ||||||||||||||| |||||||||||    
T  5325529 atattttatgcattgtctcaatcaactgagctaaactcacgaggac 5325574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 8137974 - 8137929
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || | ||||||||||||||| ||||||||    
T  8137974 atattttatgcattgtccataccaactgagctaagcttacgaggac 8137929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 8461858 - 8461899
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||||||||||||||| | || ||||||||||||||||||||    
T  8461858 atattttatgcattgtcccaaccaactgagctaagctcacga 8461899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 15310357 - 15310316
Alignment:
Q  317 tttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||  | ||||||||||||||||||||||||||    
T  15310357 tttatgcattgtctatatcaactgagctaagctcacgaggac 15310316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 15490726 - 15490685
Alignment:
Q  317 tttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||  | ||||||||||||||||||||||||||    
T  15490726 tttatgcattgtctatatcaactgagctaagctcacgaggac 15490685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 18147495 - 18147450
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| |||| ||| ||||||||||||||| ||||    
T  18147495 atattttatgcattgtccaaaccaattgagctaagctcacgtggac 18147450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 18638139 - 18638094
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||||| || ||||||||||||| |||| |||||    
T  18638139 atattttatgcattgttccaaccaactgagctaagttcactaggac 18638094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 29499810 - 29499765
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||    
T  29499810 atattttatgcattgtccataccaattgagctaagctcacgaggac 29499765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 30551066 - 30551107
Alignment:
Q  317 tttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||| ||||||||||||||| |||| ||||||    
T  30551066 tttatgcattgttccaatcaactgagctaaactcatgaggac 30551107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 34997493 - 34997452
Alignment:
Q  317 tttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||  | ||||||||||||||||||||||||||    
T  34997493 tttatgcattgtctatatcaactgagctaagctcacgaggac 34997452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 38763537 - 38763582
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| |||| ||||||||||| ||||||||||||    
T  38763537 atatattatgcattgtccaaaccaactgagctatgctcacgaggac 38763582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 40316895 - 40316850
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||| |||| |||||||||| |||||||||||||||    
T  40316895 atatattatgcattattcatatcaactgagataagctcacgaggac 40316850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 42367768 - 42367723
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||||||||||||  ||||||||||||||||||||| ||||    
T  42367768 atatattatgcattgttcttatcaactgagctaagctcacggggac 42367723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 44215815 - 44215856
Alignment:
Q  317 tttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||  |||||||||||||| |||||||||||    
T  44215815 tttatgcattgttcctatcaactgagctaaactcacgaggac 44215856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 44293621 - 44293568
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||||| |||| |||||||||||  | | |||||||||||||||||||||||||    
T  44293621 atcttacatatattatgcattgtctataccaactgagctaagctcacgaggact 44293568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 17693312 - 17693264
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggactta 361  Q
    ||||||||||| |||| | || |||||||| ||||||||||||||||||    
T  17693312 atattttatgcgttgtcccaaccaactgagttaagctcacgaggactta 17693264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 19163563 - 19163603
Alignment:
Q  318 ttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||| || | ||||||||||||||||||||||||    
T  19163563 ttatgcattgtccataccaactgagctaagctcacgaggac 19163603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 22775662 - 22775622
Alignment:
Q  318 ttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||| |||| ||||| ||||||||||||||||||    
T  22775662 ttatgcattgtccaaaccaactaagctaagctcacgaggac 22775622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 35103140 - 35103104
Alignment:
Q  318 ttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||||||||||||| | ||||||||||||||||||||    
T  35103140 ttatgcattgttcataccaactgagctaagctcacga 35103104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 32843284 - 32843329
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||    
T  32843284 atattttatgcattgtccaaaccaactgagctaagctcacgaggac 32843329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 20370303 - 20370347
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||||||||||||||| || |||||||||||||||||||||||||    
T  20370303 atattttatgcattgtccatatcaactgagctaagctcacgagga 20370347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 4332689 - 4332734
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||    
T  4332689 atatattatgcattattcaaaccaactgagctaagctcacgaggac 4332734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 21506780 - 21506825
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || | ||||||||||||||||||||||||    
T  21506780 atattttatgcattgtccataccaactgagctaagctcacgaggac 21506825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 22722441 - 22722396
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||    
T  22722441 atattttatgcattgttcatactaactgagctaagctcacgaggac 22722396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 28244126 - 28244171
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||| | |||||||| |||||||||||||||    
T  28244126 atattttatgcattgttcataccaactgagttaagctcacgaggac 28244171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 39481188 - 39481135
Alignment:
Q  305 aatcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||| ||| |||||||||||| || | ||||||||||||||||||||||||    
T  39481188 aatcttacataatttatgcattgtccataccaactgagctaagctcacgaggac 39481135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 44579675 - 44579630
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || | ||||||||||||||||||||||||    
T  44579675 atattttatgcattgtccataccaactgagctaagctcacgaggac 44579630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 53162237 - 53162192
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || ||||| ||||||||||||||||||||    
T  53162237 atattttatgcattgtccatatcaattgagctaagctcacgaggac 53162192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 2496596 - 2496548
Alignment:
Q  311 atatattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||||| |||||||||||||| | ||||||| |||||||||||||||||    
T  2496596 atatatattatgcattgttcatagcaactgaactaagctcacgaggact 2496548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 25340946 - 25340990
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||||||||||||||| || | |||||||||||||||||||||||    
T  25340946 atattttatgcattgtccataccaactgagctaagctcacgagga 25340990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 356
Target Start/End: Complemental strand, 52575986 - 52575943
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgagg 356  Q
    ||||||||||||||||||| | ||||||||||||||| ||||||    
T  52575986 atattttatgcattgttcataccaactgagctaagcttacgagg 52575943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 3612199 - 3612249
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||| ||||||||| | || |||||||||||||||||||| |||||    
T  3612199 cttatatatattatgcattatccatatcaactgagctaagctcacaaggac 3612249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 14827564 - 14827522
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgag 355  Q
    |||||||||||||||| || | |||||||||||||||||||||    
T  14827564 atattttatgcattgtccataccaactgagctaagctcacgag 14827522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 20612299 - 20612341
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgag 355  Q
    |||| ||||||||||||||| |||| |||||||||||||||||    
T  20612299 atatattatgcattgttcaagtcaaatgagctaagctcacgag 20612341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 43490439 - 43490481
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgag 355  Q
    |||| |||||||||||||| | |||||||||||||||||||||    
T  43490439 atatattatgcattgttcataccaactgagctaagctcacgag 43490481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Original strand, 48796240 - 48796286
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||| ||||||||||| ||||  ||||||||||||||||||||||||    
T  48796240 atatcttatgcattgtccaaactaactgagctaagctcacgaggact 48796286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 354
Target Start/End: Complemental strand, 49088796 - 49088750
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||| ||||||||||||||||| | |||||||||||||| |||||||    
T  49088796 cttacatattttatgcattgtttatatcaactgagctaaactcacga 49088750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 3100260 - 3100215
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| || | ||||||||||||||||||||||||    
T  3100260 atatgttatgcattgtccacaccaactgagctaagctcacgaggac 3100215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 7868761 - 7868716
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||||||||||||  | ||||||||||||||||||||||||    
T  7868761 atatattatgcattgttcttaccaactgagctaagctcacgaggac 7868716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 9856127 - 9856172
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||||||||||||||| ||||| ||||| ||||||||||||    
T  9856127 atatattatgcattgttcaaaccaactaagctatgctcacgaggac 9856172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 10498717 - 10498762
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| || | ||||||||||||||||||||||||    
T  10498717 atatattatgcattgtccataccaactgagctaagctcacgaggac 10498762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 10617588 - 10617547
Alignment:
Q  317 tttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||| | || ||||||||||||||||||||||||||    
T  10617588 tttatgcattatccatatcaactgagctaagctcacgaggac 10617547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 20537921 - 20537876
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| || |||||||||||||||||| |||||||    
T  20537921 atatattatgcattgtccatatcaactgagctaagctcgcgaggac 20537876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 21331439 - 21331484
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| || | ||||||||||||||||||||||||    
T  21331439 atatattatgcattgtccataacaactgagctaagctcacgaggac 21331484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 21628910 - 21628955
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||| | |||| ||||||||||||||||||||||||    
T  21628910 atatattatgcattatccaaaccaactgagctaagctcacgaggac 21628955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 29631225 - 29631176
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggacttaa 362  Q
    |||| ||||||||||| || | ||||||||||||||||| ||||||||||    
T  29631225 atatattatgcattgtccataccaactgagctaagctcatgaggacttaa 29631176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 29817980 - 29818013
Alignment:
Q  309 ttatatattttatgcattgttcaaatcaactgag 342  Q
    ||||||||||||||||||||||| ||||||||||    
T  29817980 ttatatattttatgcattgttcatatcaactgag 29818013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 32629119 - 32629074
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || | ||||||||||||||||||| ||||    
T  32629119 atattttatgcattgtccataccaactgagctaagctcacgtggac 32629074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 32836212 - 32836171
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||||||||||||||| || | ||||||||||||||||||||    
T  32836212 atattttatgcattgtccataccaactgagctaagctcacga 32836171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 33745138 - 33745093
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || ||||| ||||||||||||||| ||||    
T  33745138 atattttatgcattgtccatatcaattgagctaagctcacggggac 33745093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 36170116 - 36170157
Alignment:
Q  317 tttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||| ||||| |||| |||||||||||||||    
T  36170116 tttatgcattgttcatatcaattgagttaagctcacgaggac 36170157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 51379801 - 51379842
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    ||||||||||||||||||| |||||||||| ||| |||||||    
T  51379801 atattttatgcattgttcatatcaactgaggtaaactcacga 51379842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 54796148 - 54796189
Alignment:
Q  317 tttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||  |||| |||||||||||||||||||||    
T  54796148 tttatgcattgttcctatcagctgagctaagctcacgaggac 54796189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 47040921 - 47040961
Alignment:
Q  318 ttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||| ||||||||| ||||||| ||||||||    
T  47040921 ttatgcattgttcatatcaactgaactaagcttacgaggac 47040961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 9582006 - 9581963
Alignment:
Q  312 tatattttatgcattgttcaaatcaactgagctaagctcacgag 355  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  9582006 tatattttatgcattgttccaaccaactgagctaagctcacgag 9581963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 13496155 - 13496108
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    |||| |||||||||||||| |||||||||| |||||||||||||||||    
T  13496155 atatattatgcattgttcatatcaactgagttaagctcacgaggactt 13496108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 2445346 - 2445293
Alignment:
Q  305 aatcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||| ||||| |||||||||||||| |||||||||| |||||| ||||||||    
T  2445346 aatcttgtatatattatgcattgttcatatcaactgagttaagcttacgaggac 2445293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 4494893 - 4494938
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || | ||||||||||||||||||||||||    
T  4494893 atattttatgcattgtccataccaactgagctaagctcacgaggac 4494938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 9444996 - 9444951
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||    
T  9444996 atattttatacattgttcataccaactgagctaagctcacgaggac 9444951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 9677274 - 9677229
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| |||| ||||||||||||||||||||||||    
T  9677274 atatattatgcattgtccaaaccaactgagctaagctcacgaggac 9677229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 24827096 - 24827055
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagct 349  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  24827096 cttatatattttatgcattgtccatatcaactgagctaagct 24827055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 25934856 - 25934807
Alignment:
Q  305 aatcttatatattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    ||||||| |||| |||| ||||||||||||||||||| ||||||||||||    
T  25934856 aatcttacatatattattcattgttcaaatcaactgatctaagctcacga 25934807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 24167912 - 24167960
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggactta 361  Q
    |||||||||||||||| |||| |||||||| ||||||||| ||||||||    
T  24167912 atattttatgcattgtacaaaccaactgagttaagctcacaaggactta 24167960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Original strand, 9392690 - 9392736
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||| ||||||||| |||| | |||||||||||||||||||||||||    
T  9392690 atatattatgcatttttcataacaactgagctaagctcacgaggact 9392736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 12204413 - 12204363
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||| ||||||||||| || ||||||||||||| ||||||||||||    
T  12204413 cttacatatattatgcattgtccatatcaactgagctatgctcacgaggac 12204363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 12329320 - 12329270
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||||||||| |||||||| | ||||||||||||||||||| ||||    
T  12329320 cttacatattttatgtattgttcataacaactgagctaagctcacggggac 12329270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 14350989 - 14350947
Alignment:
Q  312 tatattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||||||||||||||||||| |||||||||| ||| |||||||    
T  14350989 tatattttatgcattgttcatatcaactgagttaaactcacga 14350947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 18256922 - 18256876
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||| ||||||||||| |  |||||||||||||||||||||||||||    
T  18256922 atatattatgcattgtccttatcaactgagctaagctcacgaggact 18256876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 33938701 - 33938743
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgag 355  Q
    |||| |||||||||||||| | |||||||||||||||||||||    
T  33938701 atatattatgcattgttcataccaactgagctaagctcacgag 33938743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 3054026 - 3054067
Alignment:
Q  317 tttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||  ||||| ||||||||||||||||||||    
T  3054026 tttatgcattgttcctatcaattgagctaagctcacgaggac 3054067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 9111086 - 9111041
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||||||||||||| | ||||||| ||||||||||||||||    
T  9111086 atatattatgcattgttcataccaactgaactaagctcacgaggac 9111041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 12256515 - 12256471
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||| |||||  ||||||||||||||||||||||||    
T  12256515 atattttatgcattattcaac-caactgagctaagctcacgaggac 12256471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 12333590 - 12333635
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || |  |||||||||||||||||||||||    
T  12333590 atattttatgcattgtccatactaactgagctaagctcacgaggac 12333635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 12735265 - 12735310
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| | || |||||||| |||||||||||||||    
T  12735265 atattttatgcattgtcccaaccaactgagttaagctcacgaggac 12735310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 16890465 - 16890518
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggactta 361  Q
    |||| |||||||||||||||| || | ||||| || ||||||||||||||||||    
T  16890465 cttacatattttatgcattgtccataccaactaagttaagctcacgaggactta 16890518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 17935768 - 17935727
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||||||||||||||| |||| ||||||||||||| ||||||    
T  17935768 atattttatgcattgtccaaaccaactgagctaagttcacga 17935727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 18313968 - 18313927
Alignment:
Q  317 tttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||  |||||||||| |||||||||||||||    
T  18313968 tttatgcattgttcctatcaactgagttaagctcacgaggac 18313927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 20847533 - 20847574
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||||||||||||||| ||||  |||||||||||||||||||    
T  20847533 atattttatgcattgtccaaactaactgagctaagctcacga 20847574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 21296797 - 21296752
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| | || |||||||||||| |||||||||||    
T  21296797 atattttatgcattgtcccaaccaactgagctaaactcacgaggac 21296752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 26320585 - 26320626
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||||||||||||||| || | ||||||||||||||||||||    
T  26320585 atattttatgcattgtccataccaactgagctaagctcacga 26320626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 32053827 - 32053782
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| ||||||||||| || | ||||||||||||||||||||||||    
T  32053827 atatattatgcattgtccataccaactgagctaagctcacgaggac 32053782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 1030329 - 1030277
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||| |||||||||||||||| | || ||| ||||||||||| ||||||||    
T  1030329 atcttacatattttatgcattgtactaaccaattgagctaagcttacgaggac 1030277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 2931373 - 2931417
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||||||||| ||| | | ||||||||||||||||||||||||||    
T  2931373 atattttatgtattctcccaatcaactgagctaagctcacgagga 2931417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 12904339 - 12904379
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacg 353  Q
    |||| |||||||||||||| |||||||||| ||||||||||    
T  12904339 atatattatgcattgttcatatcaactgaggtaagctcacg 12904379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 20744177 - 20744133
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||| ||||||||||| || | |||||||||||||||||||||||    
T  20744177 atatattatgcattgtccataccaactgagctaagctcacgagga 20744133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 28951438 - 28951394
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    |||| |||||||||||||| | |||||||| ||||||||||||||    
T  28951438 atatattatgcattgttcataccaactgagttaagctcacgagga 28951394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 22950 - 22905
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||| ||||||| | ||||||||||||||||    
T  22950 atattttatgcattgttcatatcaactaaactaagctcacgaggac 22905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 185302 - 185257
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||||||||||||||| || | ||||||||||||||||||||||||    
T  185302 atattttatgcattgtccataccaactgagctaagctcacgaggac 185257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 223197 - 223151
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||||||||| ||||| || | |||||||||||||||||||||||||    
T  223197 atattttatgtattgtccataccaactgagctaagctcacgaggact 223151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 18168 - 18124
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgagga 357  Q
    ||||||| |||||||| |||||||||||||||||||| |||||||    
T  18168 atattttctgcattgtccaaatcaactgagctaagctgacgagga 18124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 32657 - 32613
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctc 350  Q
    |||||| |||| |||||||||||||||| ||||||||||||||||    
T  32657 atcttacatatattatgcattgttcaaaccaactgagctaagctc 32613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 5464 - 5417
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggactt 360  Q
    |||| |||||||||||||  | ||||||||||||||||||||||||||    
T  5464 atatattatgcattgttcttaccaactgagctaagctcacgaggactt 5417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 1567 - 1521
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggact 359  Q
    |||||||||||||||| || | ||||||||||||||||||| |||||    
T  1567 atattttatgcattgtccataccaactgagctaagctcacgtggact 1521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 37574 - 37532
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgag 355  Q
    ||||||||||||||||||| | ||||| |||||||||||||||    
T  37574 atattttatgcattgttcataccaacttagctaagctcacgag 37532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 204634 - 204584
Alignment:
Q  308 cttatatattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    |||| |||||||||||||||||||   ||||||||||| ||||||||||||    
T  204634 cttacatattttatgcattgttcatgccaactgagctatgctcacgaggac 204584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 244515 - 244477
Alignment:
Q  316 ttttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    ||||||||||||| || ||||||||||||||||||||||    
T  244515 ttttatgcattgtccatatcaactgagctaagctcacga 244477  T

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Target: scaffold0069 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 51035 - 50990
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacgaggac 358  Q
    ||||||||||||||||||||| |||| ||| ||||||||| |||||    
T  51035 atattttatgcattgttcaaaccaacggagttaagctcacaaggac 50990  T

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Target: scaffold0062 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 7520 - 7471
Alignment:
Q  306 atcttatatattttatgcattgttcaaatcaactgagctaagctcacgag 355  Q
    |||||| ||||||||||||||||||| | ||| |||| ||||||||||||    
T  7520 atcttacatattttatgcattgttcataccaattgagttaagctcacgag 7471  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 47263 - 47304
Alignment:
Q  313 atattttatgcattgttcaaatcaactgagctaagctcacga 354  Q
    |||||||||||||||| || | ||||||||||||||||||||    
T  47263 atattttatgcattgtccataccaactgagctaagctcacga 47304  T

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