View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3047_low_11 (Length: 425)

Name: NF3047_low_11
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3047_low_11
NF3047_low_11
[»] chr4 (9 HSPs)
chr4 (18-333)||(47292305-47292620)
chr4 (55-276)||(56209616-56209838)
chr4 (341-414)||(47291918-47291991)
chr4 (131-273)||(45863436-45863579)
chr4 (131-264)||(45883384-45883518)
chr4 (61-170)||(54303383-54303492)
chr4 (349-408)||(47288412-47288472)
chr4 (61-94)||(45863240-45863273)
chr4 (61-94)||(45882639-45882672)
[»] chr8 (1 HSPs)
chr8 (56-271)||(7973526-7973742)
[»] chr5 (2 HSPs)
chr5 (101-276)||(10520217-10520393)
chr5 (220-283)||(35803584-35803647)
[»] chr2 (1 HSPs)
chr2 (131-275)||(24348395-24348540)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 47292620 - 47292305
Alignment:
Q  18 ctttaaacaaggaaacaggatcagcttcaggagacgtataaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagc 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47292620 ctttaaataaggaaacaggatcagcttcaggagacgtataaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcagggacataagc 47292521  T
Q  118 aacaataagttttcctgattttctgaaattcatgatttcccttcgaatttcatgagtttagcccaaccgcaatttaaacgataaatatgaagacacactg 217  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47292520 aacaataagttttcctgattttctgaaattcatgatttcctttcgaatttcatgagtttagcccaaccacaatttaaacgataaatatgaagacacactg 47292421  T
Q  218 cagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacctcaccatggtgctcaggtatctggccgctcaaatc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47292420 cagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacctcaccatggtgctcagatatctggccgctcaaatc 47292321  T
Q  318 aatttgcaagacgctg 333  Q
    ||||||||||||||||    
T  47292320 aatttgcaagacgctg 47292305  T

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Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 55 - 276
Target Start/End: Original strand, 56209616 - 56209838
Alignment:
Q  55 ataaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatt 154  Q
    ||||| |||||||||| ||||||||||||||||||||||  |||| |||| || ||||||||| |||| |||||| || |||||||||||||| | ||||    
T  56209616 ataaatttcttcacatacacaagcaatgtaatattctttaactccaattgaagtaacataagccacaacaagtttaccagattttctgaaatttaagatt 56209715  T
Q  155 tcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaat 253  Q
    | |||||||||||||| ||||||||||||||| |||||||||  || |||| ||||| | || |||||||||||||||||||| || |||||||||| ||    
T  56209716 tgccttcgaatttcatcgagtttagcccaaccacaatttaaagtatcaatacgaagatatacggcagaaatacgatgatcataagctgctttcaacatat 56209815  T
Q  254 tatcgcaaattcgaggcagagat 276  Q
    ||||||||| | |||||||||||    
T  56209816 tatcgcaaaattgaggcagagat 56209838  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 341 - 414
Target Start/End: Complemental strand, 47291991 - 47291918
Alignment:
Q  341 gtgcagtatcagtcgattagggcttggaaaggaaaagaatagtgtatgagcgttagcttagggtttcttctcac 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47291991 gtgcagtatcagtcgattagggcttggaaaggaaaagaatagtgtatgagcgttagcttagggtttcttctcac 47291918  T

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Target: chr4; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 131 - 273
Target Start/End: Original strand, 45863436 - 45863579
Alignment:
Q  131 cctgattttctgaaattcatgatttcccttcgaatttcatgag-tttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat 229  Q
    ||||||||||||||||||| |||||  ||||||||||||| || |||||||||||| |||||||||  || ||| |||||| | || ||||||||||||     
T  45863436 cctgattttctgaaattcaagatttgtcttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacgag 45863535  T
Q  230 gatcatatgcggctttcaacaaattatcgcaaattcgaggcaga 273  Q
    ||||||| || ||||||||||||||||| |||||| | ||||||    
T  45863536 gatcataagctgctttcaacaaattatctcaaatttggggcaga 45863579  T

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Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 131 - 264
Target Start/End: Original strand, 45883384 - 45883518
Alignment:
Q  131 cctgattttctgaaattcatgatttcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat 229  Q
    ||||||||||||||||| | ||| |  ||||||||||||| |||||||||||||||||||||||||   | ||| |||||| ||||  |||||||||||     
T  45883384 cctgattttctgaaatttaagatctgtcttcgaatttcatcgagtttagcccaaccgcaatttaaattgtcaatttgaagatacacaccagaaatacgag 45883483  T
Q  230 gatcatatgcggctttcaacaaattatcgcaaatt 264  Q
    ||||||| || ||||||||||||||||||||||||    
T  45883484 gatcataagctgctttcaacaaattatcgcaaatt 45883518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 61 - 170
Target Start/End: Complemental strand, 54303492 - 54303383
Alignment:
Q  61 ttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttccctt 160  Q
    ||||| |||||||| ||| | |||||| |||||| |||| ||| |||| ||||||||||  |||||||||||||||||||||||||| | ||||| ||||    
T  54303492 ttctttacatgcactagcgacgtaatactcttttactccaatttcagggacataagcaaagataagttttcctgattttctgaaatttaagatttgcctt 54303393  T
Q  161 cgaatttcat 170  Q
    ||||||||||    
T  54303392 cgaatttcat 54303383  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 408
Target Start/End: Complemental strand, 47288472 - 47288412
Alignment:
Q  349 tcagtcgattagggctt-ggaaaggaaaagaatagtgtatgagcgttagcttagggtttct 408  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| ||||    
T  47288472 tcagtcgattagggctttggaaaggaaaagaatagtgcatgagcgtgagcttagggcttct 47288412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 45863240 - 45863273
Alignment:
Q  61 ttcttcacatgcacaagcaatgtaatattctttt 94  Q
    ||||||||||||||||||||||||||||| ||||    
T  45863240 ttcttcacatgcacaagcaatgtaatattatttt 45863273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 45882639 - 45882672
Alignment:
Q  61 ttcttcacatgcacaagcaatgtaatattctttt 94  Q
    |||||||||||| |||||||||||||||||||||    
T  45882639 ttcttcacatgcgcaagcaatgtaatattctttt 45882672  T

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Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 56 - 271
Target Start/End: Original strand, 7973526 - 7973742
Alignment:
Q  56 taaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgattt 155  Q
    ||||||||||||||||||||| | ||||||||||||||||| || ||| |||  |||||||||||||||||||| ||||||||||||||||| |||||||    
T  7973526 taaacttcttcacatgcacaacctatgtaatattcttttccacccattacagcgacataagcaacaataagtttacctgattttctgaaatttatgattt 7973625  T
Q  156 cccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaatt 254  Q
    ||||| ||||||||| ||||||||| |||| ||| |||||| ||||||||  || | |||| |||||||||||| ||||||| |||||||||||||||||    
T  7973626 ccctttgaatttcatcgagtttagctcaactgcattttaaaggataaataacaacatacacagcagaaatacgaggatcataagcggctttcaacaaatt 7973725  T
Q  255 atcgcaaattcgaggca 271  Q
     ||||||||| ||||||    
T  7973726 ctcgcaaatttgaggca 7973742  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 276
Target Start/End: Complemental strand, 10520393 - 10520217
Alignment:
Q  101 attgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttcccttcgaatttcatga-gtttagcccaaccgcaatttaaacgat 199  Q
    |||| ||| |||||||| ||||  | ||| || |||||||||||||| |  |||| |||| |||| |||| | ||||||||||||| ||| ||||| | |    
T  10520393 attgaagggacataagccacaaccattttccccgattttctgaaatttaaaatttgcctttgaatctcatcaagtttagcccaaccccaacttaaatggt 10520294  T
Q  200 aaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagat 276  Q
      ||||||||| | || || ||||||| | |||||||||| |||||||| |||||| |||||||| |||| ||||||    
T  10520293 cgatatgaagataaacagcggaaatacaaggatcatatgctgctttcaagaaattaccgcaaatttgaggaagagat 10520217  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 283
Target Start/End: Original strand, 35803584 - 35803647
Alignment:
Q  220 gaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacct 283  Q
    ||||||||| ||||||| ||||||||||| |||| ||||||||||  |||||||||| ||||||    
T  35803584 gaaatacgaggatcataagcggctttcaagaaataatcgcaaatttcaggcagagataatacct 35803647  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 275
Target Start/End: Complemental strand, 24348540 - 24348395
Alignment:
Q  131 cctgattttctgaaattcatgatttcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat 229  Q
    ||||||||| ||||||||| ||| | |||||||||||| |  | |||| |||| || |||| ||||| || |||||| ||| | ||  ||||||| |||     
T  24348540 cctgattttttgaaattcaagatgtgccttcgaatttcttctactttaccccacccacaatctaaactatcaatatggagatagaccccagaaattcgag 24348441  T
Q  230 gatcatatgcggctttcaacaaattatcgcaaattcgaggcagaga 275  Q
    ||||||| || |||||||| ||||| ||||| ||| |||| |||||    
T  24348440 gatcataggctgctttcaaaaaattctcgcatatttgaggtagaga 24348395  T

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