View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3047_low_12 (Length: 409)
Name: NF3047_low_12
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 400
Target Start/End: Original strand, 50455975 - 50456359
Alignment:
| Q |
16 |
acaattgacagtaataccaaaaattaggataggaataaagttctaaacaacttaaatctctgttaagctcaccaaattatgagtatcccaatatcttgga |
115 |
Q |
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| T |
50455975 |
acaattgacagtaataccaaaaattaggataggaataaagttctaaacaacttaaatctctgctaagctcaccaaactatgagtatcccaatatcttgga |
50456074 |
T |
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| Q |
116 |
gattaccataagacaaaaggatatggcattgccactgagagagatgacctatactttgtatctaacaatatatacataatggaaaccgaaaacatttc-- |
213 |
Q |
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| T |
50456075 |
gattaccataagacaaaaggatatggcattgccactgagagagatgacctatactttgtatctaacaatatacacataatggaaaccgaaaacatttcta |
50456174 |
T |
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| Q |
214 |
--taagtagcataataacttctctcatcattgattgtgaaataattaatatgagttgaagcacgtacttttccactcctaattgcagtgttgaattcctc |
311 |
Q |
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| T |
50456175 |
attaagtagcataataacttctctcatcattgattgtgaaa----taatatgagttgaagcacgtacttttccactcctaattgcagtgttgaagtcctc |
50456270 |
T |
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| Q |
312 |
aggaattgttggaggagtaaactccttcattggtgtgatattcccttcttcaacctaacaaaacaaaagacacataactacagtattat |
400 |
Q |
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| T |
50456271 |
aggaattgttggaggagtaaactccttcattggtgtgatattcccttcttcaacctaacaaaacaaaagacgcataactacaatattat |
50456359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 259 - 374
Target Start/End: Original strand, 13010676 - 13010791
Alignment:
| Q |
259 |
atatgagttgaagcacgtacttttccactcctaattgcagtgttgaattcctcaggaattgttggaggagtaaactccttcattggtgtgatattccctt |
358 |
Q |
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|||||||||| |||||| |||||||||||| | ||||||||||| | |||||||| ||| |||||||||||| ||||||| |||||| || |||||| |
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| T |
13010676 |
atatgagttggagcacggacttttccactcttgattgcagtgttaaggtcctcagggatttgtggaggagtaaattccttcactggtgtaattttccctc |
13010775 |
T |
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| Q |
359 |
cttcaacctaacaaaa |
374 |
Q |
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|||||| |||| |||| |
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| T |
13010776 |
cttcaatctaagaaaa |
13010791 |
T |
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