View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3047_low_13 (Length: 404)
Name: NF3047_low_13
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_low_13 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 15 - 404
Target Start/End: Complemental strand, 51939709 - 51939317
Alignment:
| Q |
15 |
cacagaggtggaggtacatgtggacgtttgtcacaaaactatgctttagtgacaacctgcttcatttttctgttccctttgaggaagcaaaaaatcgcta |
114 |
Q |
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| T |
51939709 |
cacagaggtggaggtacatgtggacgtttgtcacaaaactatgctttagtgacaacctgcttcatttttctgttccctttgaggaagcaaaaaatcgcta |
51939610 |
T |
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| Q |
115 |
tattgactttgtatgtagggtacttcttcttctcaacagtgcaaccatccaaaaattctctctagatatttcagaaaaccttgacccctaccatattaat |
214 |
Q |
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| T |
51939609 |
tattgactttgtatgtagggtacttcttct---caacagtgcaaccatccaaaaattctctctagatatttcagaaaaccttgacccctaccatattaat |
51939513 |
T |
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| Q |
215 |
ctgtggatatctgctatttcaaataagagagtaaaaaatattagtgtttccgttcgttcatggatcaactttaacctttctgcttatccccttttcaaat |
314 |
Q |
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| T |
51939512 |
ctgtggatatctgctatttcaaataagagagtaaaaaatattagtgtttccgttcgttcatggatcaactttaacctttctgcttatccccttttcaaat |
51939413 |
T |
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| Q |
315 |
gtcagtccttggaggaattggtgctagaaatgatg------tgtaatatcgaagttcccacttttgtttctctttcatccctcacagtcctggact |
404 |
Q |
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| T |
51939412 |
gtcagtccttggaggaattggtgctagaaatgatgtgtcaatgtaatatcgaagttcccacttttgtttctctttcatccctcacagtcctggact |
51939317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 120 - 258
Target Start/End: Complemental strand, 51944602 - 51944464
Alignment:
| Q |
120 |
actttgtatgtagggtacttcttcttctcaacagtgcaaccatccaaaaattctctctagatatttcagaaaaccttgacccctaccatattaatctgtg |
219 |
Q |
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| T |
51944602 |
actttgtatatagggtactgcttaatctcaacactgcaaccatccaaacattttctctggatattctacataattttgatccctaccatatcaatcaatg |
51944503 |
T |
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| Q |
220 |
gatatctgctatttcaaataagagagtaaaaaatattag |
258 |
Q |
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| T |
51944502 |
gatatctgttgtttcaaataagagagtaaaaattattag |
51944464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 51944431 - 51944394
Alignment:
| Q |
297 |
cttatccccttttcaaatgtcagtccttggaggaattg |
334 |
Q |
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| T |
51944431 |
cttatccgcttttcaaatgccagtccttggaggaattg |
51944394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 37420135 - 37420094
Alignment:
| Q |
298 |
ttatccccttttcaaatgtcagtccttggaggaattggtgct |
339 |
Q |
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| T |
37420135 |
ttatcccattttcaaatgccagaccttggaggaattggtgct |
37420094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 37420393 - 37420356
Alignment:
| Q |
19 |
gaggtggaggtacatgtggacgtttgtcacaaaactat |
56 |
Q |
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| T |
37420393 |
gaggtggatatacatgtggacgtttgtcacaaaactat |
37420356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 34751811 - 34751775
Alignment:
| Q |
303 |
cccttttcaaatgtcagtccttggaggaattggtgct |
339 |
Q |
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| T |
34751811 |
cccttttcaaatgccagtccttagaggaattggtgct |
34751775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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