View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3047_low_19 (Length: 325)

Name: NF3047_low_19
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3047_low_19
NF3047_low_19
[»] chr4 (1 HSPs)
chr4 (8-308)||(49494611-49494897)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 49494611 - 49494897
Alignment:
Q  8 tgaaatgttccacgactactatgaatttcgtttttctggtgtaattatttatatgtttgctgaagttcgcgtaatgattttggttaaagagttgaaataa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||| ||||||||||    
T  49494611 tgaaatgttccacgactactatgaatttcgtttttctggtgtaattatttatatgtttgctga--------------ttttggttaaagggttgaaataa 49494696  T
Q  108 gttcaaactagcttattaattaagtttggataattaaactgcttaaaatcattttgcacacatttataccgataagaacaaatactacacgcgatcttag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  49494697 gttcaaactagcttattaattaagtttggataattaaactgcttaaaatcattttgcacacatctataccgataagaacaaatactaaacgcgatcttag 49494796  T
Q  208 ccgaaaggtcaagagagatgagttgaaatatggccttgcagttccatttaacacctactcagttcctttcttgagtcttgacttgttgatgtggggcttc 307  Q
    || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49494797 ccaaaaggtcaagagagatgagttgaaatatggccttgcagctccatttaacacctactcagttcctttcttgagtcttgacttgttgatgtggggcttc 49494896  T

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