View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3047_low_2 (Length: 605)
Name: NF3047_low_2
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 18 - 575
Target Start/End: Original strand, 47590723 - 47591296
Alignment:
| Q |
18 |
ctccaaaatttcaccaattcaatttggccaatagttctaacctcaacctgctgcatagattcacaacttggaaactggcagatatcttacatgaagtggg |
117 |
Q |
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| T |
47590723 |
ctccaaaatttcaccaattcaatttggccaatagttctaacctcaacctgctgcatagattcacaacttggaaactggcagatatcttacatgaagtggg |
47590822 |
T |
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| Q |
118 |
gaatttacagacaggggatagaaccattaagaattatgaaacaagatcagtaaaattgaatgatcttcaacccatatatactcttgctcaatgtacgc-- |
215 |
Q |
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| T |
47590823 |
gaatttacagacaggggatagaaccattaagaattatgaaacaagatcagtaaaattgaatgatcttcaacccatatacactcttgctcaatgtacgcca |
47590922 |
T |
|
| Q |
216 |
--------------agattgcagagcctgcctgcaaaacattttccaaaatgaaattccttggagtagtttggcaagtccagagggaaaaattctatatc |
301 |
Q |
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| T |
47590923 |
gatctgtctgatacagattgcagagcctgcctgcaaaacattttccaaaatgaaattccttggagtagtttggcaagtccagagggaaaaattctatatc |
47591022 |
T |
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| Q |
302 |
ctagctgctatatgatgtttggattgtcccaattctacaacaacgatgatgaaccagagatgtttgggcaagttagccctcctccaacaattaaaggtga |
401 |
Q |
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| T |
47591023 |
ctagctgctatatgatgtttggattgtcccaattctacaacaacgatgatgaaccagagatgtttgggcaagttagccctcctccaacaattaaaggtga |
47591122 |
T |
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| Q |
402 |
agtttcattcaactaatattacatgactcaattcatctatctctcttccaaaatatcttcaagccatataaaaaatcaatgataatcaagtaatagaact |
501 |
Q |
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| T |
47591123 |
agtttcattcaactaatattacatgactcaattcatctatctctcttccaaaatatcttcaagccatataaaaaatcaatgataatcaagtaatagaact |
47591222 |
T |
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| Q |
502 |
caagtggtgtctgcacttcatctaaagttgaattgaatagtttggcttgtacctgagttcaattctaaggtgaa |
575 |
Q |
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| T |
47591223 |
caagtggtgtctgaacttcatctaaagttgaattgaatagtttggcttgtacctgagttcaattctaaggtgaa |
47591296 |
T |
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