View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3047_low_24 (Length: 291)
Name: NF3047_low_24
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 87 - 284
Target Start/End: Complemental strand, 38314165 - 38313968
Alignment:
| Q |
87 |
tatctaatttaaaggaccacaataggtatttggtctattgtttatgtgattgtattttgtaacactcttatttgtttaattttgcagcattatgtccact |
186 |
Q |
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| T |
38314165 |
tatctaatttaaaggaccacaataggtatttggtctattgtttatgtgattgtattttgtaacactcttatttgtttaattttgcagcattatgtccact |
38314066 |
T |
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| Q |
187 |
ttactattatcacaacaagcaccctctcaattacttcctcctcctgattttcacagtcactatggcttttcccgttggattgagttgtgcctatgtta |
284 |
Q |
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| T |
38314065 |
ttactattatcacaacaagcaccctctcaattacttcctcctcctgattttcacagtcactatggcttttcccgttggattgagttgtgcctttgtta |
38313968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 38276204 - 38276119
Alignment:
| Q |
155 |
tatttgtttaattttgcagcattatgtccactttactattatcacaacaagcaccctctcaattacttcctcctcctgattttcac |
240 |
Q |
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| T |
38276204 |
tatttgtttcattttgcagttttatgtccactatactggtatcataacaagcaccctcttaatcacttcctcctcctaattttcac |
38276119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 38272491 - 38272406
Alignment:
| Q |
155 |
tatttgtttaattttgcagcattatgtccactttactattatcacaacaagcaccctctcaattacttcctcctcctgattttcac |
240 |
Q |
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|||||||| |||||||||||| ||||||||| || |||||| ||||||||||||||||||| ||||||||||| |||||||| |
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| T |
38272491 |
tatttgttctattttgcagcatcatgtccactatatgcttatcatcacaagcaccctctcaattatttcctcctcctaattttcac |
38272406 |
T |
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