View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3047_low_26 (Length: 282)
Name: NF3047_low_26
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 6684563 - 6684814
Alignment:
| Q |
19 |
attatctacttaatgtggaactcgcaagggttgtcttatctctcacaagtaataataaataa----ataaaatgaaaactcctaatatgtgatgttagag |
114 |
Q |
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| T |
6684563 |
attatctacttaatgtggaactcacaagggttgtctaatctctcacaagtaataataaataagtatataaaatgaaaactcctaatatgtgatgttagag |
6684662 |
T |
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| Q |
115 |
ataaggatagtaggatacttctgcgatggggattggctgatttagtttatgttgtagaaactgcaaagacaaacgtaaagaaatgtccttttctttttcc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6684663 |
ataaggatagtaggatacttctgcgatggggattggctgatttagtttatgttgtggaaactgcaaagacaaacgtaaagaaatgtcctttcctttttcc |
6684762 |
T |
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| Q |
215 |
ctttttattgtttatttggtttatatattctatcaaaaagaccacgagtatt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6684763 |
ctttttattgtttatttggtttatatattctatcaaaaagaccacgagtatt |
6684814 |
T |
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