View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3047_low_27 (Length: 279)
Name: NF3047_low_27
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_low_27 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 1007261 - 1006981
Alignment:
| Q |
1 |
tgctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaagctattgcactatcaccaatcatgaacattgaagta |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1007261 |
tgctgcaacatattctgcttcagtagtgaagagagtaactataggttgctttttagatgaccaagctattgcactatcaccaatcatgaacattgaagta |
1007162 |
T |
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| Q |
101 |
tattgtaaaacgacataaaatttaaaacaag-ttttatcaaaacgacataatttgagacggagggagtaataaacatgtttagaattccgtgaacagcat |
199 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| |
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| T |
1007161 |
tattgtaaaacgacataaaatttaaaacaagtttttatcaaaacgacataatttgagacggaggaagtaataaacatatttagaattccgtgaacaacat |
1007062 |
T |
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| Q |
200 |
-nnnnnnncaaggtgatatggctatacacaaaaatgagtgttaaatgcggaatgcaaaagcagggaatatattgtctctct |
279 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||| |
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| T |
1007061 |
aaaaaaaacaaggtgacatggctatacacaaaaacgagtgttaaatgcggagtgcaagagcagggaatatatcatctctct |
1006981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 16866332 - 16866241
Alignment:
| Q |
1 |
tgctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaagctattgcactatcaccaatcatgaaca |
92 |
Q |
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| T |
16866332 |
tgctgcaacatattcaacttcagtagtagaaagagtaactataggctgctttttagatggccaggctattgcactatcaccaatcatgaaca |
16866241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 20545297 - 20545210
Alignment:
| Q |
1 |
tgctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaagctattgcactatcaccaatcatg |
88 |
Q |
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| T |
20545297 |
tgctgcaacatattctgcttcagtagtggagagagtaactataggttgctttttagatgaccaagctattgtactatcacaaatcatg |
20545210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 42971748 - 42971685
Alignment:
| Q |
2 |
gctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaag |
65 |
Q |
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| T |
42971748 |
gctgctacaaattctgcttcagtagtggacagagttacaatagcttgttttttagatgaccaag |
42971685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 40610020 - 40610107
Alignment:
| Q |
1 |
tgctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaagctattgcactatcaccaatcatg |
88 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
40610020 |
tgctgcaacatattatgcttcagtagtggagagagtaactatagattgttttttagatgaccaagttattgcactatcaccaatcatg |
40610107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 27888017 - 27888108
Alignment:
| Q |
1 |
tgctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaagctattgcactatcaccaatcatgaaca |
92 |
Q |
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||||||||||| || |||||| | ||||| ||||||||||||| ||| |||| |||||||||| |||||||| ||| |||||||| |||| |
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| T |
27888017 |
tgctgcaacatcctcagcttcaatggtggaaggagtaactataggctgcttttttgatgaccaagatattgcaccatctccaatcataaaca |
27888108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 27946675 - 27946766
Alignment:
| Q |
1 |
tgctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaagctattgcactatcaccaatcatgaaca |
92 |
Q |
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||||||||||| || |||||| | ||||| ||||||||||||| ||| |||| |||||||||| |||||||| ||| |||||||| |||| |
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| T |
27946675 |
tgctgcaacatcctcagcttcaatggtggaaggagtaactataggctgcttttttgatgaccaagatattgcaccatctccaatcataaaca |
27946766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 28026918 - 28027009
Alignment:
| Q |
1 |
tgctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaagctattgcactatcaccaatcatgaaca |
92 |
Q |
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| T |
28026918 |
tgctgcaacatcctcagcttcaatggtggaaggagtaactataggctgcttttttgatgaccaagatattgcaccatctccaatcataaaca |
28027009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 47144618 - 47144527
Alignment:
| Q |
1 |
tgctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaagctattgcactatcaccaatcatgaaca |
92 |
Q |
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|||||| | ||| |||||||||||||| || |||||||||||||| ||| ||||||||||||| |||||||| | |||||||| ||| |||| |
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| T |
47144618 |
tgctgctaaatactctgcttcagtagtagaaagagtaactataggctgctttttagatgaccaggctattgctccatcaccaaccataaaca |
47144527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 5144260 - 5144349
Alignment:
| Q |
3 |
ctgcaacatattctgcttcagtagtggagagagtaactataggttgcgttttagatgaccaagctattgcactatcaccaatcatgaaca |
92 |
Q |
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|||||||||| || | ||||| ||||| |||||||||||||| ||| | ||||||||| |||||||||||| ||| || ||||| |||| |
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| T |
5144260 |
ctgcaacatactcaacctcagtggtggaaagagtaactataggctgcttcttagatgacaaagctattgcaccatccccgatcataaaca |
5144349 |
T |
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