View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3047_low_28 (Length: 279)
Name: NF3047_low_28
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_low_28 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
| [»] scaffold0552 (1 HSPs) |
| | |
|
| [»] scaffold0813 (1 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 27)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 5690103 - 5690354
Alignment:
| Q |
10 |
gcacagagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5690103 |
gcacagagaaatatacccaatgctttttgaccttacaattgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatt |
5690202 |
T |
|
| Q |
110 |
tgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5690203 |
tgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaa |
5690302 |
T |
|
| Q |
210 |
ggctaatacaatcttccaaatttatcagaagaattttgtcgagatgtccaat |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5690303 |
ggctaatacaatcttccaaatttatcagaagaattttgtcgagatgtccaat |
5690354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 26 - 261
Target Start/End: Complemental strand, 5176860 - 5176625
Alignment:
| Q |
26 |
ccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttccaagtcctctt |
125 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||| ||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5176860 |
ccaatgctttttgaccttactattgacaagggcactcttgttattgcagtgttatttgcaagcagagtagttaaagattccatttgttccaagtcctctt |
5176761 |
T |
|
| Q |
126 |
ccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaatacaatcttc |
225 |
Q |
| |
|
||||||||| |||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
5176760 |
ccaacttgtcaatcatcgaacacccagaaagaatgagtgttttcaaagatttcaacttatagatacttcttggaagactctgaaggctaatacaatcttc |
5176661 |
T |
|
| Q |
226 |
caaatttatcagaagaattttgtcgagatgtccaat |
261 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
5176660 |
caagtttatcagaagaattttatcgagatgtccaat |
5176625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 10 - 258
Target Start/End: Original strand, 5128361 - 5128609
Alignment:
| Q |
10 |
gcacagagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatt |
109 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||| ||||||||| || ||| ||||| |||||| ||||||||||||||| ||||| ||||||||| |
|
|
| T |
5128361 |
gcacagagagatatatccaatgctttttgaccttactactgaaaagggtactctttttattgcagtgttatttgcaagcagagttgttaatgattccatt |
5128460 |
T |
|
| Q |
110 |
tgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaa |
209 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||| || ||||||||||||||||||| ||||||||||||||||||||||||||| ||| || | | |
|
|
| T |
5128461 |
tgttccaagtcctcttccaacttgtcaatcattatacaaccagaaagaatgagagttttcaaagatttcaacttatagatgcttcttgggaggctacata |
5128560 |
T |
|
| Q |
210 |
ggctaatacaatcttccaaatttatcagaagaattttgtcgagatgtcc |
258 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
5128561 |
ggctaatgcaatcttccaaatttatcagaagaattttattgagatgtcc |
5128609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 26 - 261
Target Start/End: Complemental strand, 5278687 - 5278452
Alignment:
| Q |
26 |
ccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttccaagtcctctt |
125 |
Q |
| |
|
|||||||||||||||||||| | || |||||||| ||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5278687 |
ccaatgctttttgaccttactatagacaagggcactcttgttattgcagtgttatttgcaagcagagtagttaaagattccatttgttccaagtcctctt |
5278588 |
T |
|
| Q |
126 |
ccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaatacaatcttc |
225 |
Q |
| |
|
||||||||| |||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
5278587 |
ccaacttgtcaatcatcgaacacccagaaagaatgagtgttttcaaagatttcaacttatagatacttcttggaagactctgaaggctaatacaatcttc |
5278488 |
T |
|
| Q |
226 |
caaatttatcagaagaattttgtcgagatgtccaat |
261 |
Q |
| |
|
||| ||||||||||||||||| ||||||| |||||| |
|
|
| T |
5278487 |
caagtttatcagaagaattttatcgagatatccaat |
5278452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 5073852 - 5074103
Alignment:
| Q |
10 |
gcacagagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatt |
109 |
Q |
| |
|
||||| ||||||||| ||||||||||| |||||||| |||||||||||| ||||||||| | |||| |||||| | |||||||||||||||| ||| |
|
|
| T |
5073852 |
gcacaaagaaatatatccaatgcttttcgaccttactactgaaaagggcactcttgttattgcggtgttatttgctatcagagtggttaaagatgtcatc |
5073951 |
T |
|
| Q |
110 |
tgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaa |
209 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | || |
|
|
| T |
5073952 |
tgttctaagtcctcttccaacttgtcaatcattgaacacccggaaagaatgagagtttttagagatttcaacttatagatacttcttggaaggctctgaa |
5074051 |
T |
|
| Q |
210 |
ggctaatacaatcttccaaatttatcagaagaattttgtcgagatgtccaat |
261 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
5074052 |
gaccaatacaatcttccaaatttatcagaagaattttattgagatgttcaat |
5074103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 245
Target Start/End: Complemental strand, 5096841 - 5096610
Alignment:
| Q |
14 |
agagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgtt |
113 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||||||| || ||| |||||||||||| ||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
5096841 |
agagaaatgtatccaatgctttttgaccttactactgaaaagggtactctttttattccagtgttatttgcaagcagaatggttaatgattccatttgtt |
5096742 |
T |
|
| Q |
114 |
ccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggct |
213 |
Q |
| |
|
| | |||||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||| |
|
|
| T |
5096741 |
ctatgtcctcttccaactcgtcaatcattatacacccagaaagaatgagagttttcagagatttcaacttatagatgcttcctggaaggctacgaaggct |
5096642 |
T |
|
| Q |
214 |
aatacaatcttccaaatttatcagaagaattt |
245 |
Q |
| |
|
|| |||||||||||||| ||| |||||||||| |
|
|
| T |
5096641 |
aacacaatcttccaaatctattagaagaattt |
5096610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 5447724 - 5447473
Alignment:
| Q |
10 |
gcacagagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatt |
109 |
Q |
| |
|
||||| ||||||||| |||||||| || ||||| || ||||||||||| |||||||| ||| | |||||||||||||||||||||||||||||| |
|
|
| T |
5447724 |
gcacaaagaaatatatccaatgctcttcgacctaactaccgaaaagggcactgttgttattgaagtattatttgcaagcagagtggttaaagattccatc |
5447625 |
T |
|
| Q |
110 |
tgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaa |
209 |
Q |
| |
|
||||||||||||||||||| ||||| |||| || |||| || ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| | |
|
|
| T |
5447624 |
tgttccaagtcctcttccagcttgtcaatctttaaacaaccagaaagaatgagagttttcaaagatttcaacttatagatgcttcttgggaggttaccta |
5447525 |
T |
|
| Q |
210 |
ggctaatacaatcttccaaatttatcagaagaattttgtcgagatgtccaat |
261 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
5447524 |
ggccaatacaatcttccaaatttatcagaagaattttattgagatgtccaat |
5447473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 26 - 245
Target Start/End: Original strand, 5066654 - 5066873
Alignment:
| Q |
26 |
ccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttccaagtcctctt |
125 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | ||| ||||| |||| | || ||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
5066654 |
ccaatgctttttgaccttactactgaaaagggtattctttttattgcagttttatgtgcaagcagagtggttaaagattccatttgttctatgtcctctt |
5066753 |
T |
|
| Q |
126 |
ccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaatacaatcttc |
225 |
Q |
| |
|
| ||||||| ||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
5066754 |
ctaacttgtcaatcattatacacccagaaagaatgagagttttaagagatttcaacttatagatgcttcttggaaggttacgaaggctaacacaatcttc |
5066853 |
T |
|
| Q |
226 |
caaatttatcagaagaattt |
245 |
Q |
| |
|
||||| ||| |||||||||| |
|
|
| T |
5066854 |
caaatctattagaagaattt |
5066873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 5102562 - 5102793
Alignment:
| Q |
14 |
agagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgtt |
113 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| |||||||||||| |||||||| |||||| ||||| || ||||||||||| ||||||||||||| |
|
|
| T |
5102562 |
agagagatatatccaatgctttttgaccttactactgaaaagggcactgttgttattgcagtgttgtttgctagaagagtggttaatgattccatttgtt |
5102661 |
T |
|
| Q |
114 |
ccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggct |
213 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
5102662 |
ccaagtcgtcttccaacttgtcaatcattaaacacccagaaagaatgagtattttcaaagatttcaacttatagatgcttcttggaaggctacgaaggct |
5102761 |
T |
|
| Q |
214 |
aatacaatcttccaaatttatcagaagaattt |
245 |
Q |
| |
|
|| |||||||||||||| ||| ||||| |||| |
|
|
| T |
5102762 |
aacacaatcttccaaatctattagaagtattt |
5102793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 5383463 - 5383212
Alignment:
| Q |
10 |
gcacagagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatt |
109 |
Q |
| |
|
||||| ||||||||| |||| ||||||||||||| | |||||| ||| || ||||||||| |||||| || |||||||| ||| ||||||||||||||| |
|
|
| T |
5383463 |
gcacaaagaaatatatacaatactttttgaccttaaaattgaaaggggaactcttgttattgcagtgttatctgcaagcaaagtagttaaagattccatt |
5383364 |
T |
|
| Q |
110 |
tgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaa |
209 |
Q |
| |
|
||||| | |||||||||||||||| ||||| || |||| || ||||||||||||||||||||||||||||||||||| ||||||||||| ||| || | | |
|
|
| T |
5383363 |
tgttctatgtcctcttccaacttggtaatctttaaacaaccagaaagaatgagagttttcagagatttcaacttataaatgcttcttgggaggctacata |
5383264 |
T |
|
| Q |
210 |
ggctaatacaatcttccaaatttatcagaagaattttgtcgagatgtccaat |
261 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||||||||| | ||||| |||||| |
|
|
| T |
5383263 |
ggctaacacagtcttccaaattaatcagaagaattttcttgagatctccaat |
5383212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 5344997 - 5344747
Alignment:
| Q |
11 |
cacagagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccattt |
110 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | ||||||| || |||||||| |||||| |||||| | |||| |||||||||||| ||||| |
|
|
| T |
5344997 |
cacagagaaatatatccaatgctttttgaccttactactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatggttaaagatttcattt |
5344898 |
T |
|
| Q |
111 |
gttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaag |
210 |
Q |
| |
|
|||| ||||||||||||||||||| |||| || |||| || ||||||||||||||||| ||||| ||||||||||||||||||||||| ||| || | || |
|
|
| T |
5344897 |
gttctaagtcctcttccaacttgtcaatctttaaacaacccgaaagaatgagagtttttagagaattcaacttatagatgcttcttggcaggctacatag |
5344798 |
T |
|
| Q |
211 |
gctaatacaatcttccaaatttatcagaagaattttgtcgagatgtccaat |
261 |
Q |
| |
|
||||||||| ||||||||||| || ||||||||||| | ||||| |||||| |
|
|
| T |
5344797 |
gctaatacagtcttccaaattaatgagaagaattttcttgagatctccaat |
5344747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 5354564 - 5354809
Alignment:
| Q |
16 |
agaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttcc |
115 |
Q |
| |
|
||||||||| ||||||||||| || || || |||| ||||| || ||||||||| ||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
5354564 |
agaaatatatccaatgcttttggaactaactattgagaagggtactcttgttattgcagtgtcatttgcaagcagggtggttaaagattccaattgttcc |
5354663 |
T |
|
| Q |
116 |
aagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaa |
215 |
Q |
| |
|
||||||||||||||||||| | | || ||| || ||||||||||||||||||| |||||||||||| |||||||||||||| ||| |||||||| ||| |
|
|
| T |
5354664 |
aagtcctcttccaacttgtctaactttttacaaccagaaagaatgagagttttcaaagatttcaacttgtagatgcttcttgggaggctagaaaggttaa |
5354763 |
T |
|
| Q |
216 |
tacaatcttccaaatttatcagaagaattttgtcgagatgtccaat |
261 |
Q |
| |
|
| || |||| |||||||||||||||||||| | |||||||||||| |
|
|
| T |
5354764 |
tgcagtctttgaaatttatcagaagaattttattgagatgtccaat |
5354809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 26 - 245
Target Start/End: Original strand, 5157588 - 5157807
Alignment:
| Q |
26 |
ccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttccaagtcctctt |
125 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || ||| ||||| ||||||| | ||||||||||||||||||||||||||| ||||| | |||||||| |
|
|
| T |
5157588 |
ccaatgctttttgaccttactactgaaaagggtactctttttattgcagtgtcgtgtgcaagcagagtggttaaagattccatctgttctatgtcctctt |
5157687 |
T |
|
| Q |
126 |
ccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaatacaatcttc |
225 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||| | | |||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |
|
|
| T |
5157688 |
ccaacttgtcaatcattatacaccctgaaagaattaaaattttcagagatttcaacttatagatgcttcttggaaggcttcgaaggctaacacaatcttc |
5157787 |
T |
|
| Q |
226 |
caaatttatcagaagaattt |
245 |
Q |
| |
|
||||| ||| |||||||||| |
|
|
| T |
5157788 |
caaatctattagaagaattt |
5157807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 245
Target Start/End: Complemental strand, 5350515 - 5350296
Alignment:
| Q |
26 |
ccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttccaagtcctctt |
125 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | ||| ||||| |||| | || ||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
5350515 |
ccaatgctttttgaccttactactgaaaagggtattctttttattgcagttttatgtgcaagcagagtggttaaagattccatttgttctatgtcctctt |
5350416 |
T |
|
| Q |
126 |
ccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaatacaatcttc |
225 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| | |||||||| |||||| || |
|
|
| T |
5350415 |
ccaacttgtcaatcattatacaccctgaaagaatgagagttttgagagatttcaacttaaagatgcttcttggaaggctttgaaggctaacacaatcctc |
5350316 |
T |
|
| Q |
226 |
caaatttatcagaagaattt |
245 |
Q |
| |
|
||||| ||| |||||||||| |
|
|
| T |
5350315 |
caaatctattagaagaattt |
5350296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 5434172 - 5433937
Alignment:
| Q |
10 |
gcacagagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatt |
109 |
Q |
| |
|
||||| ||| ||||| |||||||||||||| || | ||||| ||||| ||| ||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5434172 |
gcacaaagagatatatccaatgctttttgatctcagtactgaaagaggcactctttttattgcagtgttatttgcaagcagagtggttaaagattccata |
5434073 |
T |
|
| Q |
110 |
tgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaa |
209 |
Q |
| |
|
||||||||||| |||||||| |||| |||| || |||| || | ||| ||||||||||||| ||||||||||||||| ||||||||||| |||||| | | |
|
|
| T |
5434072 |
tgttccaagtcatcttccaaattgtcaatctttaaacagccagtaaggatgagagttttcaaagatttcaacttatatatgcttcttgggaggttacata |
5433973 |
T |
|
| Q |
210 |
ggctaatacaatcttccaaatttatcagaagaattt |
245 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5433972 |
ggccaatacaatcttccaaatttatcagaagaattt |
5433937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 5181878 - 5182122
Alignment:
| Q |
17 |
gaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttcca |
116 |
Q |
| |
|
|||||||| |||||||||| ||| |||| |||||| ||||| ||||||||| |||||| |||||||| || ||||||||||||| ||||||||||| |
|
|
| T |
5181878 |
gaaatatatgcaatgcttttggactttactactgaaaacggcactcttgttattgcagtgttatttgcaatcaatgtggttaaagatttcatttgttcca |
5181977 |
T |
|
| Q |
117 |
agtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaat |
216 |
Q |
| |
|
| |||||||||||||||| ||||||| ||||||| |||||||||||||| || | |||||||| ||||||||||||||||||||| | ||||||||| |
|
|
| T |
5181978 |
aatcctcttccaacttgtcaatcattaaacacccagaaagaatgagagtgtttaatgatttcaaattatagatgcttcttggaaggctttgaaggctaat |
5182077 |
T |
|
| Q |
217 |
acaatcttccaaatttatcagaagaattttgtcgagatgtccaat |
261 |
Q |
| |
|
||||||||||||||||||| ||| ||||| | ||||| |||||| |
|
|
| T |
5182078 |
gcaatcttccaaatttatcaaaagtattttattgagatctccaat |
5182122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 29 - 261
Target Start/End: Original strand, 5257297 - 5257529
Alignment:
| Q |
29 |
atgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttccaagtcctcttcca |
128 |
Q |
| |
|
||||||||||| |||| | ||| || ||||| ||||||||| |||||| |||||||| ||||||||||||||| ||| ||||| ||||||||||||| |
|
|
| T |
5257297 |
atgctttttgatcttaaaactgataatggcactcttgttattgcagtgttatttgcaattagagtggttaaagatgtcatctgttctaagtcctcttcca |
5257396 |
T |
|
| Q |
129 |
acttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaatacaatcttccaa |
228 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| || | | | |||||||||||||||||| |
|
|
| T |
5257397 |
acttgtcaatcattgaacacccagaaagaatgaaagtttttagagatttcaacttatagatgcttcttgggagttcgcataagctaatacaatcttccaa |
5257496 |
T |
|
| Q |
229 |
atttatcagaagaattttgtcgagatgtccaat |
261 |
Q |
| |
|
|||||||| || |||||| | ||||| |||||| |
|
|
| T |
5257497 |
atttatcaaaacaattttcttgagatttccaat |
5257529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 26 - 245
Target Start/End: Complemental strand, 5426031 - 5425812
Alignment:
| Q |
26 |
ccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttccaagtcctctt |
125 |
Q |
| |
|
|||||||||| |||| |||| ||||||||| || ||| ||||| |||| | || ||||| ||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
5426031 |
ccaatgctttgtgacattaccactgaaaagggtactctttttattgcagttttatgtgcaatcagagtggttaaagattccatttgttctatgtcctctt |
5425932 |
T |
|
| Q |
126 |
ccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaatacaatcttc |
225 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| || ||||||||| |
|
|
| T |
5425931 |
ccaacttgtcaatcattacacacccagaaagaatgagagttttcagagatttcaacttatagatgtttcttggaaggctttgaaggcgaacacaatcttc |
5425832 |
T |
|
| Q |
226 |
caaatttatcagaagaattt |
245 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
5425831 |
taaatttattagaagaattt |
5425812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 5370701 - 5370464
Alignment:
| Q |
17 |
gaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttcca |
116 |
Q |
| |
|
||||| || |||||||||||||||| ||| ||||||||| || ||| ||||| |||||| ||||||||||||||||||||| |||||||| ||||| | |
|
|
| T |
5370701 |
gaaatgtatccaatgctttttgaccgtactactgaaaagggtaccctttttattgcagtgttatttgcaagcagagtggttaatgattccatctgttcta |
5370602 |
T |
|
| Q |
117 |
agtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaat |
216 |
Q |
| |
|
|||||||||||||| | ||||||| |||||| |||||||| ||||| || ||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
5370601 |
tatcctcttccaacttctcaatcattacacaccctgaaagaataagagtctttagagatttcaacttataaatgcttcttggaaggttacgaaggctaac |
5370502 |
T |
|
| Q |
217 |
acaatcttccaaatttatcagaagaattttgtcgagat |
254 |
Q |
| |
|
||||||||| |||| ||| |||||||||| | |||||| |
|
|
| T |
5370501 |
acaatcttcaaaatctattagaagaatttcgccgagat |
5370464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 5284333 - 5284584
Alignment:
| Q |
10 |
gcacagagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatt |
109 |
Q |
| |
|
||||| || |||||| ||||||||||| |||||||| |||||||||||| ||||||||| | |||| ||| || | |||||||||||||||| ||| |
|
|
| T |
5284333 |
gcacaaagcaatatatccaatgcttttcgaccttactactgaaaagggcactcttgttattgcggtgttattagctatcagagtggttaaagatgtcatc |
5284432 |
T |
|
| Q |
110 |
tgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaa |
209 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||| ||| ||| || | | |
|
|
| T |
5284433 |
tgttctaagtcctcttccaacttgtcaatcattgaacacccaaaaagaatgaaagtttttagagatttcaacttatagatgcttcgtgggaggctacata |
5284532 |
T |
|
| Q |
210 |
ggctaatacaatcttccaaatttatcagaagaattttgtcgagatgtccaat |
261 |
Q |
| |
|
|||||||||| |||| |||||||||| | |||||| | ||||| |||||| |
|
|
| T |
5284533 |
agctaatacaaccttcaaaatttatcaaagcaattttattgagatttccaat |
5284584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 63 - 257
Target Start/End: Complemental strand, 5447241 - 5447047
Alignment:
| Q |
63 |
ttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgag |
162 |
Q |
| |
|
|||||||| ||||| ||||||||| |||||||||||||||||||||| || ||||||||||||| ||||| |||| || |||| || ||||||| ||| |
|
|
| T |
5447241 |
ttgttattgaagtgttatttgcaagaagagtggttaaagattccattttctcgaagtcctcttccaccttgtcaatctttaaacaaccagaaagaacgag |
5447142 |
T |
|
| Q |
163 |
agttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaatacaatcttccaaatttatcagaagaattttgtcgagatgtc |
257 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||| ||| || | |||||||| || |||||||| ||||||||||||||||| | |||||||| |
|
|
| T |
5447141 |
agttttcaaagatttcaacttatagatgctttttgggaggctacataggctaatgcagtcttccaagtttatcagaagaattttattgagatgtc |
5447047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 109 - 245
Target Start/End: Original strand, 5243910 - 5244046
Alignment:
| Q |
109 |
ttgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaa |
208 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
5243910 |
ttgttccaagtcctcttccaacttctcaatcattatacaccctgagagaatgaaagttttcagagatttcaacttatagatgcttcttggaaggcttcga |
5244009 |
T |
|
| Q |
209 |
aggctaatacaatcttccaaatttatcagaagaattt |
245 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
5244010 |
aggctaacacaatcttccaaatctattagaagaattt |
5244046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 26 - 246
Target Start/End: Complemental strand, 5397071 - 5396851
Alignment:
| Q |
26 |
ccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttccaagtcctctt |
125 |
Q |
| |
|
|||||||||||| |||||| | ||||||| ||||| ||| ||||| |||||| |||||||| || ||||||||||||||||| |||||||| || |||| |
|
|
| T |
5397071 |
ccaatgctttttaaccttaaaattgaaaacggcactctttttattgcagtgttatttgcaaccaaggtggttaaagattccatctgttccaaatcttctt |
5396972 |
T |
|
| Q |
126 |
ccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaatacaatcttc |
225 |
Q |
| |
|
|||| |||| ||||| | ||||||| ||||||| ||||||| || |||||||||||||| || |||||||||||| | ||| ||||||||| || |
|
|
| T |
5396971 |
ccaatttgtcaatcagtaaacacccagaaagaagaagagtttgtagtgatttcaacttataaatacttcttggaaggctttgaagcttaatacaattctc |
5396872 |
T |
|
| Q |
226 |
caaatttatcagaagaatttt |
246 |
Q |
| |
|
||||||||| ||||| ||||| |
|
|
| T |
5396871 |
caaatttattagaagtatttt |
5396851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 52 - 167
Target Start/End: Complemental strand, 5281395 - 5281280
Alignment:
| Q |
52 |
aaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttccaagtcctcttccaacttgttaatcattgaacacccg |
151 |
Q |
| |
|
|||||| || ||||||||| |||||||||| |||| ||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5281395 |
aaagggaactcttgttattgcagtgtcattagcaatcagggtcgttaaggattccatttgttccaagtcctcttctaacttgttaatcattgaacaccca |
5281296 |
T |
|
| Q |
152 |
gaaagaatgagagttt |
167 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
5281295 |
gaaagaatcagagttt |
5281280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 52 - 167
Target Start/End: Complemental strand, 5179636 - 5179521
Alignment:
| Q |
52 |
aaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttccaagtcctcttccaacttgttaatcattgaacacccg |
151 |
Q |
| |
|
|||||| || || |||||| |||||||||| |||| ||| || ||||| |||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5179636 |
aaagggaactctagttattgcagtgtcattagcaatcagggtcgttaaggattccatttcttccaagtcctcttccaacttgttaatctttgaacaccca |
5179537 |
T |
|
| Q |
152 |
gaaagaatgagagttt |
167 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
5179536 |
gaaagaatcagagttt |
5179521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 5147004 - 5147091
Alignment:
| Q |
174 |
atttcaacttatagatgcttcttggaaggttagaaaggctaatacaatcttccaaatttatcagaagaattttgtcgagatgtccaat |
261 |
Q |
| |
|
|||||||| |||| || ||||||||||| | ||||||| ||||||||||||||||||||||||||||||| | ||||| |||||| |
|
|
| T |
5147004 |
atttcaacctatatatacttcttggaagacttcgaaggctagtacaatcttccaaatttatcagaagaattttattgagatatccaat |
5147091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 5243858 - 5243914
Alignment:
| Q |
11 |
cacagagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgtt |
67 |
Q |
| |
|
|||| ||||||||| || ||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
5243858 |
cacaaagaaatatatccgatgctttttgaccttactactgaaaagggcactcttgtt |
5243914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 16)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 4361213 - 4360963
Alignment:
| Q |
11 |
cacagagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccattt |
110 |
Q |
| |
|
|||| ||||||| | ||||||| |||||| |||||| |||||||||| || ||||||| ||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
4361213 |
cacaaagaaataaatccaatgcgttttgatcttacaattgaaaagggtacttttgttataccagtgttatttgcaatcagagtggttaaagattccattt |
4361114 |
T |
|
| Q |
111 |
gttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaag |
210 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| || || ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
4361113 |
gttccaagtcctcttccaacgtgtcaatcattgaacatccagatagaatgagagttttcagagatttcaacgtatagatgtttcttggaaggttacaaag |
4361014 |
T |
|
| Q |
211 |
gctaatacaatcttccaaatttatcagaagaattttgtcgagatgtccaat |
261 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||||||||| | |||||||||||| |
|
|
| T |
4361013 |
gctaatgcaatctttcaaatttatcaaaagaattttcttgagatgtccaat |
4360963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 4344782 - 4344532
Alignment:
| Q |
11 |
cacagagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccattt |
110 |
Q |
| |
|
|||| ||||||| | ||||||| |||||||||||| ||||||||| || ||||||| |||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
4344782 |
cacaaagaaataaatccaatgcgttttgaccttactactgaaaagggtacttttgttatagcagtgttatttgcaatcagagtggttaaagattccattt |
4344683 |
T |
|
| Q |
111 |
gttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaag |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| || || ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
4344682 |
gttccaagtcctcttccaacttgtcaatcattaaacatccagatagaatgagagttttcagagatttcaacgtatagatgtttcttggaaggttacaaag |
4344583 |
T |
|
| Q |
211 |
gctaatacaatcttccaaatttatcagaagaattttgtcgagatgtccaat |
261 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
4344582 |
gctaatacaatttttcaaatttatcaaaagaattttgttgagatgtccaat |
4344532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 4123884 - 4124136
Alignment:
| Q |
11 |
cacagagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccattt |
110 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| ||||||||||| ||||||| |||| | |||||||| ||||||||||||||||||||||| |
|
|
| T |
4123884 |
cacagagaaataaatccaatgctttttgaccttactaccgaaaagggcacttttgttatagcagtattatttgcaatcagagtggttaaagattccattt |
4123983 |
T |
|
| Q |
111 |
gttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaag |
210 |
Q |
| |
|
||||||| |||||||||||||||| ||||||| |||| || || ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
4123984 |
gttccaactcctcttccaacttgtcaatcattaaacatcccgatagaatgagagttttcagagatttcaacgaataaatgtttcttggaaggttagaaag |
4124083 |
T |
|
| Q |
211 |
gctaatacaatcttccaaatttatcagaagaattttgtcgagatgtccaattg |
263 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||||| ||| | ||||||||||||| |
|
|
| T |
4124084 |
gctagtacaatctttcaaatttatcaaaagaactttcttaagatgtccaattg |
4124136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 4320564 - 4320814
Alignment:
| Q |
11 |
cacagagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccattt |
110 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| ||||||||| || ||||||| ||||| | |||||||| ||| ||||||||||||||||||| |
|
|
| T |
4320564 |
cacagagaaataaatccaatgctttttgaccttactaatgaaaagggaacttttgttataccagtattatttgcaatcagggtggttaaagattccattt |
4320663 |
T |
|
| Q |
111 |
gttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaag |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| || || ||||||||||| ||||||| ||||||| |||||||| ||||||||||| || |||| |
|
|
| T |
4320664 |
gttccaagtcctcttccaacttgtcaatcattaaacatcccgatagaatgagagtattcagagttttcaacgtatagatgtttcttggaaggctacaaag |
4320763 |
T |
|
| Q |
211 |
gctaatacaatcttccaaatttatcagaagaattttgtcgagatgtccaat |
261 |
Q |
| |
|
|||||||||||||| ||||||||||| || || ||| | |||||||||||| |
|
|
| T |
4320764 |
gctaatacaatctttcaaatttatcaaaacaacttttttgagatgtccaat |
4320814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 4335481 - 4335229
Alignment:
| Q |
11 |
cacagagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccattt |
110 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||| |||| |||||||||||| ||||||| ||||||| || ||| | |||||||||||||||||||||| |
|
|
| T |
4335481 |
cacaaagagatatagccaatgctttttgactttactactgaaaagggcacttttgttataccagtgttatctgccatgagagtggttaaagattccattt |
4335382 |
T |
|
| Q |
111 |
gttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaag |
210 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||| || || |||||||||||||||||||| |||||| |||||||| |||||||||||||| |||| |
|
|
| T |
4335381 |
gttccaagtcctcttccaacttgtcaatctttaaacatcctgatagaatgagagttttcagagacttcaacgtatagatgtttcttggaaggttacaaag |
4335282 |
T |
|
| Q |
211 |
gctaatacaatcttccaaatttatcagaagaattttgtcgagatgtccaattg |
263 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||||| ||| | ||||||||||||| |
|
|
| T |
4335281 |
gctaatgcaatctttcaaatttatcaaaagaactttcttaagatgtccaattg |
4335229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 4133373 - 4133591
Alignment:
| Q |
14 |
agagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgtt |
113 |
Q |
| |
|
||||||||||| ||||||||||||||||| | |||||||||||| |||||||| |||||| || ||| ||||||||||||||| |||||||||| |
|
|
| T |
4133373 |
agagaaatatattcaatgctttttgaccttgcgactgaaaagggcacttttgttattgcagtgttatccacaatcagagtggttaaagactccatttgtt |
4133472 |
T |
|
| Q |
114 |
ccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggct |
213 |
Q |
| |
|
||||||||| ||||| |||| ||| ||| |||| || |||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |||||| |
|
|
| T |
4133473 |
ccaagtcct--tccaatttgtcaataattaaacagccagaaagaataagagttttcagagatttcaacgaatagatggttcttggaaggttacgaaggct |
4133570 |
T |
|
| Q |
214 |
aatacaatcttccaaatttat |
234 |
Q |
| |
|
| |||| |||| ||||||||| |
|
|
| T |
4133571 |
agtacagtctttcaaatttat |
4133591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 6621542 - 6621642
Alignment:
| Q |
101 |
gattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaa |
200 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||| |||||| ||||| || |||||||| | ||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
6621542 |
gattccatctgttccaagtcctcctccaatttgtcaatcatggaacatcctgaaagaattaaagtttctagagattttaatttatagatgcttcttggaa |
6621641 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
|
|
| T |
6621642 |
g |
6621642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 6498476 - 6498664
Alignment:
| Q |
16 |
agaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttcc |
115 |
Q |
| |
|
|||||| || |||||||||||||| ||||| |||||||||| || ||||||| |||| | || |||| || || || || |||||||| |||||| |
|
|
| T |
6498476 |
agaaatgtatccaatgctttttgatcttactattgaaaagggaacttttgttatagcagtcttatccgcaatcaaggttgtcaatgattccatctgttcc |
6498575 |
T |
|
| Q |
116 |
aagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggtt |
204 |
Q |
| |
|
| |||||| ||||| |||| |||| | ||||| || |||||||| | ||||| |||||||| || |||||||||||||| |||||||| |
|
|
| T |
6498576 |
acgtcctcctccaatttgtcaatcttggaacatccagaaagaatcaaagtttctagagattttaatttatagatgcttctcggaaggtt |
6498664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 258
Target Start/End: Original strand, 7885339 - 7885583
Alignment:
| Q |
14 |
agagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgtt |
113 |
Q |
| |
|
||||||||| | ||||||||||||| ||||| || ||||||||| ||||| || ||||||||| |||| || ||||||||||||| |||||||| |
|
|
| T |
7885339 |
agagaaataaatgcaatgctttttgatcttactactgcaaagggcactcttgtgatagcagtgtcatccgcaaccaaggtggttaaagatttcatttgtt |
7885438 |
T |
|
| Q |
114 |
ccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggct |
213 |
Q |
| |
|
| | |||||||| ||||||| ||| ||| ||| || || |||||||| |||||||| || | |||||||| ||||| |||||||| | ||||| |
|
|
| T |
7885439 |
ctatatcctcttctaacttgtcaatttttgtacatccagacagaatgagtgttttcagcgagtctaacttatatatgctccttggaagttctcgaaggcc |
7885538 |
T |
|
| Q |
214 |
aatacaatcttccaaatttatcagaagaattttgtcgagatgtcc |
258 |
Q |
| |
|
||||||||| ||||||||| | |||||| || | ||||||||| |
|
|
| T |
7885539 |
tgtacaatctttcaaatttattaaaagaatctttttgagatgtcc |
7885583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 201
Target Start/End: Complemental strand, 6815519 - 6815416
Alignment:
| Q |
98 |
aaagattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttg |
197 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| || | |||||| ||||| || |||||||| | ||||| |||||||| || |||||| ||||||||| |
|
|
| T |
6815519 |
aaagattccatctgttccaagtcctcctccaatttttcaatcatggaacatccagaaagaatcaaagtttctagagattttaatttatagttgcttcttg |
6815420 |
T |
|
| Q |
198 |
gaag |
201 |
Q |
| |
|
|||| |
|
|
| T |
6815419 |
gaag |
6815416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 6545483 - 6545575
Alignment:
| Q |
101 |
gattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgctt |
193 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||||||| | ||||| || |||||||| | ||||| |||||||| || |||||||||||| |
|
|
| T |
6545483 |
gattccatctgttccaagtcctcctccaatttgttaatcttggaacatcccgaaagaatcaaagtttctagagattttaatttatagatgctt |
6545575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 6753091 - 6752906
Alignment:
| Q |
16 |
agaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttcc |
115 |
Q |
| |
|
||||||||| ||||||||||| | ||||| ||||||||||||| ||||||| |||| | || |||| || || | || |||||||| |||||| |
|
|
| T |
6753091 |
agaaatatatccaatgcttttcaatcttactattgaaaagggcacttttgttatagcagtcttatccgcaatcaaggtaatcaatgattccatctgttcc |
6752992 |
T |
|
| Q |
116 |
aagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaag |
201 |
Q |
| |
|
|||||||| ||||| |||| |||||| ||||| || |||||||| | ||||| |||||||| || ||||| |||| ||| ||||| |
|
|
| T |
6752991 |
aagtcctcctccaatttgtcaatcatggaacatccagaaagaatcaaagtttctagagattttaatttatatatgcatctaggaag |
6752906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 6651113 - 6651013
Alignment:
| Q |
101 |
gattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaa |
200 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||| |||| | ||||| || |||||||| | ||||| |||||||| || ||||| |||||||| |||| |
|
|
| T |
6651113 |
gattccatctgttccaagtcctcctccaatttgtcaatcttggaacatccagaaagaatcaaagtttctagagattttaatttatatatgcttctaggaa |
6651014 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
|
|
| T |
6651013 |
g |
6651013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 6796833 - 6796733
Alignment:
| Q |
101 |
gattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaa |
200 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || | |||||| | ||| || |||||||| | ||||| |||||||| || |||||||||||||||||| |
|
|
| T |
6796833 |
gattccatctgttccaagtcctcctccaatttttcaatcatggtacatccagaaagaatcaaagtttctagagattttaatgtatagatgcttcttggaa |
6796734 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
|
|
| T |
6796733 |
g |
6796733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 6837321 - 6837220
Alignment:
| Q |
100 |
agattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttgga |
199 |
Q |
| |
|
||||||||| ||| |||| ||||| ||||| |||| |||||| ||||| || |||||||| | ||||| |||||||| || ||||||||||||| ||| |
|
|
| T |
6837321 |
agattccatctgtaccaaatcctcctccaatttgtcaatcatggaacatccagaaagaatcaaagtttgtagagattttaatgtatagatgcttctcgga |
6837222 |
T |
|
| Q |
200 |
ag |
201 |
Q |
| |
|
|| |
|
|
| T |
6837221 |
ag |
6837220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 6588231 - 6588328
Alignment:
| Q |
101 |
gattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttgg |
198 |
Q |
| |
|
|||||||| |||||||||||||| |||| || | |||||| ||||| || |||||||| | ||||| | ||||| || ||||||||||||||||| |
|
|
| T |
6588231 |
gattccatctgttccaagtcctcctccagtttttcaatcatagaacatccagaaagaatcaaagtttctaacgattttaatttatagatgcttcttgg |
6588328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 8844 - 9079
Alignment:
| Q |
10 |
gcacagagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatt |
109 |
Q |
| |
|
||||| ||||||||| |||| |||||||||||||| ||||||||||||| ||||||| | |||||| || ||||||||||||||||||||||||||| |
|
|
| T |
8844 |
gcacaaagaaatatatacaatactttttgaccttactattgaaaagggcactcttgttaatgcagtgttatctgcaagcagagtggttaaagattccatc |
8943 |
T |
|
| Q |
110 |
tgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaa |
209 |
Q |
| |
|
||||| | ||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
8944 |
tgttctatgtcctcttccaacttgtcaatcattatacacccagaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggctacgaa |
9043 |
T |
|
| Q |
210 |
ggctaatacaatcttccaaatttatcagaagaattt |
245 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||| |||| |
|
|
| T |
9044 |
ggctaacacaatcttccaaatctattagaagtattt |
9079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 8877746 - 8877514
Alignment:
| Q |
10 |
gcacagagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatt |
109 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||| |||||| || || ||| ||||| |||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
8877746 |
gcacaaagaaatatatccaatgctttttgaccttactaatgaaaatggtactctttttattgcagtgttatttgcaagcagagtggttaaagatttcatc |
8877647 |
T |
|
| Q |
110 |
tgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaa |
209 |
Q |
| |
|
||||| |||||||| |||||||||| ||||||||||||||| ||||||||||||| ||| |||||||||||||| || || |||||||||||| | || |
|
|
| T |
8877646 |
tgttctaagtcctcctccaacttgtcaatcattgaacacccagaaagaatgagagattttagagatttcaacttgtatatacttcttggaaggctccgaa |
8877547 |
T |
|
| Q |
210 |
ggctaatacaatcttccaaatttatcagaagaa |
242 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
8877546 |
ggctaatacaatcttccaaatttatcaaaagaa |
8877514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 12599207 - 12599295
Alignment:
| Q |
101 |
gattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagat |
189 |
Q |
| |
|
|||||||| ||| | | ||| |||||||||||| ||||| ||||||| || ||||| || |||||||||| || |||||| | |||||| |
|
|
| T |
12599207 |
gattccatctgtactatgtcttcttccaacttgctaatctttgaacaaccagaaagtataagagttttcaaagttttcaattgatagat |
12599295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 56 - 261
Target Start/End: Original strand, 47986842 - 47987047
Alignment:
| Q |
56 |
ggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaa |
155 |
Q |
| |
|
||||| |||||||| |||||| |||||||| || ||| |||||||||| ||||| ||||| |||||||||||||||||||||| || |||| || |||| |
|
|
| T |
47986842 |
ggcactcttgttatcgcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaacttgttaatctttaaacagccagaaa |
47986941 |
T |
|
| Q |
156 |
gaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaatacaatcttccaaatttatcagaagaattttgtcgagatg |
255 |
Q |
| |
|
||||||||||||| |||||||| || || || |||||||||| ||| || | ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47986942 |
gaatgagagtttttagagattttaatttgtatgtgcttcttgggaggctacataggctaatacagtcttccaaatttatcagaagaattttgtcgagatg |
47987041 |
T |
|
| Q |
256 |
tccaat |
261 |
Q |
| |
|
|||||| |
|
|
| T |
47987042 |
tccaat |
47987047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 56 - 261
Target Start/End: Original strand, 47996129 - 47996334
Alignment:
| Q |
56 |
ggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaa |
155 |
Q |
| |
|
||||| |||||||| |||||| |||||||| || ||| |||||||||| ||||| ||||| |||||||||||||||||||||| || |||| || |||| |
|
|
| T |
47996129 |
ggcactcttgttatcgcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaacttgttaatctttaaacagccagaaa |
47996228 |
T |
|
| Q |
156 |
gaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaatacaatcttccaaatttatcagaagaattttgtcgagatg |
255 |
Q |
| |
|
||||||||||||| |||||||| || || || |||||||||| ||| || | ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47996229 |
gaatgagagtttttagagattttaatttgtatgtgcttcttgggaggctacataggctaatacagtcttccaaatttatcagaagaattttgtcgagatg |
47996328 |
T |
|
| Q |
256 |
tccaat |
261 |
Q |
| |
|
|||||| |
|
|
| T |
47996329 |
tccaat |
47996334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 56 - 261
Target Start/End: Original strand, 48005416 - 48005621
Alignment:
| Q |
56 |
ggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaa |
155 |
Q |
| |
|
||||| |||||||| |||||| |||||||| || ||| |||||||||| ||||| ||||| |||||||||||||||||||||| || |||| || |||| |
|
|
| T |
48005416 |
ggcactcttgttatcgcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaacttgttaatctttaaacagccagaaa |
48005515 |
T |
|
| Q |
156 |
gaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaatacaatcttccaaatttatcagaagaattttgtcgagatg |
255 |
Q |
| |
|
||||||||||||| |||||||| || || || |||||||||| ||| || | ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48005516 |
gaatgagagtttttagagattttaatttgtatgtgcttcttgggaggctacataggctaatacagtcttccaaatttatcagaagaattttgtcgagatg |
48005615 |
T |
|
| Q |
256 |
tccaat |
261 |
Q |
| |
|
|||||| |
|
|
| T |
48005616 |
tccaat |
48005621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 56 - 261
Target Start/End: Original strand, 48014701 - 48014906
Alignment:
| Q |
56 |
ggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaa |
155 |
Q |
| |
|
||||| |||||||| |||||| |||||||| || ||| |||||||||| ||||| ||||| |||||||||||||||||||||| || |||| || |||| |
|
|
| T |
48014701 |
ggcactcttgttatcgcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaacttgttaatctttaaacagccagaaa |
48014800 |
T |
|
| Q |
156 |
gaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaatacaatcttccaaatttatcagaagaattttgtcgagatg |
255 |
Q |
| |
|
||||||||||||| |||||||| || || || |||||||||| ||| || | ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48014801 |
gaatgagagtttttagagattttaatttgtatgtgcttcttgggaggctacataggctaatacagtcttccaaatttatcagaagaattttgtcgagatg |
48014900 |
T |
|
| Q |
256 |
tccaat |
261 |
Q |
| |
|
|||||| |
|
|
| T |
48014901 |
tccaat |
48014906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 22584159 - 22584390
Alignment:
| Q |
11 |
cacagagaaatatacccaatgctttttgaccttacagttgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccattt |
110 |
Q |
| |
|
|||| |||||| |||| ||| |||||||||| | ||||||| ||||| || ||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22584159 |
cacaaagaaatgtaccaaatagtttttgacctaaatattgaaaatggcactttttttattgcagtttcatttgcaagcagagtggttaaagattccattt |
22584258 |
T |
|
| Q |
111 |
gttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaag |
210 |
Q |
| |
|
|||||||||||||||||||||| | || || |||| || ||||||||||||||||||| |||||||||||| |||||| ||||||| ||| || |||| |
|
|
| T |
22584259 |
gttccaagtcctcttccaacttataaagtttttaacagccagaaagaatgagagttttcaaagatttcaacttgtagatgtttcttgggaggctacaaag |
22584358 |
T |
|
| Q |
211 |
gctaatacaatcttccaaatttatcagaagaa |
242 |
Q |
| |
|
||| | ||| |||| ||||||||| ||||||| |
|
|
| T |
22584359 |
gcttaaacagtcttgcaaatttattagaagaa |
22584390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 14767123 - 14767190
Alignment:
| Q |
122 |
tcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagat |
189 |
Q |
| |
|
|||||||| |||| |||| ||||||| |||||||| ||||||||||||| ||||||||| | |||||| |
|
|
| T |
14767123 |
tcttccaatttgtcaatctttgaacagccggaaaggatgagagttttcaaagatttcaattgatagat |
14767190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 49 - 261
Target Start/End: Original strand, 36213812 - 36214024
Alignment:
| Q |
49 |
tgaaaagggcacacttgttattccagtgtcatttgcaagcagagtggttaaagattccatttgttccaagtcctcttccaacttgttaatcattgaacac |
148 |
Q |
| |
|
|||||| ||||| ||||||||| |||||| |||||||| || ||||||||||||||||| ||||||| |||||||||||| |||| |||| ||||||| |
|
|
| T |
36213812 |
tgaaaatggcactcttgttattgcagtgttatttgcaatcaaggtggttaaagattccatctgttccatgtcctcttccaatttgtcaatctttgaacat |
36213911 |
T |
|
| Q |
149 |
ccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggttagaaaggctaatacaatcttccaaatttatcagaagaattttgt |
248 |
Q |
| |
|
|| ||||||||||||||||| || |||| ||||||||||| | | | |||||| | ||||||||||||||||||||||||||| ||||||| ||| | |
|
|
| T |
36213912 |
ccagaaagaatgagagttttaagtaattttaacttatagatacctttaggaaggctttgaaggctaatacaatcttccaaatttattagaagaactttat |
36214011 |
T |
|
| Q |
249 |
cgagatgtccaat |
261 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36214012 |
tgagatgtccaat |
36214024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 246
Target Start/End: Original strand, 34724626 - 34724766
Alignment:
| Q |
106 |
catttgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaaggtta |
205 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||| ||| ||| || || | |||||||||||| | || ||||| |||||||||||||||||||| | | |
|
|
| T |
34724626 |
catttgttctatgtcctcttccaacttgtcaatttttgtacatccagacacaatgagagtttttactgacttcaatttatagatgcttcttggaagctca |
34724725 |
T |
|
| Q |
206 |
gaaaggctaatacaatcttccaaatttatcagaagaatttt |
246 |
Q |
| |
|
|||||| |||| |||| ||||||||||| |||||||| |
|
|
| T |
34724726 |
caaaggcctgtacagtctttcaaatttatcaatagaatttt |
34724766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 201
Target Start/End: Original strand, 8317 - 8420
Alignment:
| Q |
98 |
aaagattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttg |
197 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| || | |||||| ||||| || |||||||| | ||||| |||||||| || |||||| ||||||||| |
|
|
| T |
8317 |
aaagattccatctgttccaagtcctcctccaatttttcaatcatggaacatccagaaagaatcaaagtttctagagattttaatttatagttgcttcttg |
8416 |
T |
|
| Q |
198 |
gaag |
201 |
Q |
| |
|
|||| |
|
|
| T |
8417 |
gaag |
8420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0813 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 4861 - 4961
Alignment:
| Q |
101 |
gattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaa |
200 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||| |||| | ||||| || |||||||| | ||||| |||||||| || ||||| |||||||| |||| |
|
|
| T |
4861 |
gattccatctgttccaagtcctcctccaatttgtcaatcttggaacatccagaaagaatcaaagtttctagagattttaatttatatatgcttctaggaa |
4960 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
|
|
| T |
4961 |
g |
4961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 6705 - 6605
Alignment:
| Q |
101 |
gattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttggaa |
200 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||| |||| | ||||| || |||||||| | ||||| |||||||| || ||||| |||||||| |||| |
|
|
| T |
6705 |
gattccatctgttccaagtcctcctccaatttgtcaatcttggaacatccagaaagaatcaaagtttctagagattttaatttatatatgcttctaggaa |
6606 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
|
|
| T |
6605 |
g |
6605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 9737 - 9636
Alignment:
| Q |
100 |
agattccatttgttccaagtcctcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttcaacttatagatgcttcttgga |
199 |
Q |
| |
|
||||||||| ||| |||| ||||| ||||| |||| |||||| ||||| || |||||||| | ||||| |||||||| || ||||||||||||| ||| |
|
|
| T |
9737 |
agattccatctgtaccaaatcctcctccaatttgtcaatcatggaacatccagaaagaatcaaagtttgtagagattttaatgtatagatgcttctcgga |
9638 |
T |
|
| Q |
200 |
ag |
201 |
Q |
| |
|
|| |
|
|
| T |
9637 |
ag |
9636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 3286691 - 3286748
Alignment:
| Q |
122 |
tcttccaacttgttaatcattgaacacccggaaagaatgagagttttcagagatttca |
179 |
Q |
| |
|
||||||||||||| |||| ||||||| || ||||| |||||||| |||| |||||||| |
|
|
| T |
3286691 |
tcttccaacttgtcaatctttgaacaaccagaaaggatgagagtgttcaaagatttca |
3286748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 3375103 - 3375055
Alignment:
| Q |
122 |
tcttccaacttgttaatcattgaacacccggaaagaatgagagttttca |
170 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||||| || |||||||||| |
|
|
| T |
3375103 |
tcttccaacttgttaatctttgaacaaccagaaagtataagagttttca |
3375055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 31175872 - 31175824
Alignment:
| Q |
122 |
tcttccaacttgttaatcattgaacacccggaaagaatgagagttttca |
170 |
Q |
| |
|
|||||||| |||| |||||||||||| || |||||||||||| |||||| |
|
|
| T |
31175872 |
tcttccaatttgtcaatcattgaacaaccagaaagaatgagacttttca |
31175824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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