View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3047_low_3 (Length: 597)
Name: NF3047_low_3
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 48 - 332
Target Start/End: Original strand, 9492023 - 9492307
Alignment:
| Q |
48 |
cttcttcaggacttctcttcattttatttgttgactttattaaccttttatctttgatcatttgcgtagttaagataaaatccaaactcccatagtattt |
147 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9492023 |
cttcttcaggacttctcttcattttattcgttgactttattaaccttttatctttgatcatttgagtagttaagataaaatccaaactcccatagtattt |
9492122 |
T |
|
| Q |
148 |
gaacaaacgagcgaaacatgtcttcccttaacaagtgagagaagaaccatttctgatagcaccaatgaacttgtagaactttcctcccccaagagaaagc |
247 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9492123 |
gaacaaacgagcgaaacaggtcttcccttaacaagtgagagaagaaccatttctgatagcaccaatgaacttgtagaactttcctcccccaagagaaagc |
9492222 |
T |
|
| Q |
248 |
gttagccgttattcaagaaagcttggctaaaggtgaaatctcctcatcgtctacatccgaaggcaattagttattgtagaatcta |
332 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9492223 |
gttagccgttattcaagaaagctcggctaaaggtgaaatctcctcatcgtctacatccgaaggcaattagttattgtagaatcta |
9492307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 332 - 578
Target Start/End: Original strand, 9492339 - 9492587
Alignment:
| Q |
332 |
ataagttaacttaagccaacaagcatagaaggataatatgtacaaggattccatctacactgatgtcgctttgaagcctttattgaactagaaaaacatg |
431 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9492339 |
ataagttaacttaagccaacaaacatagaaggataatatgtacaaggattccatctacactgatgtcgctttgaagcctttattgaactagaaaaacatg |
9492438 |
T |
|
| Q |
432 |
tttaaaagaggatttggatgcccaacatgcagtgtgtgacaattttaggac--ctctctagcacaagccgaaaaatcggctattgatgctccatatcatt |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9492439 |
tttaaaagaggatttggatgcccaacatgcagtgtgtgacaattttaggacctctctctagcacaagccgaaaaatcggctattgatgctccatatcatt |
9492538 |
T |
|
| Q |
530 |
taaaaccaccttcttccatccctccatcattattttctgagggtggggg |
578 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9492539 |
taaaaccaccttcttccatccctccatcattattttctgagggtggggg |
9492587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University