View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3047_low_30 (Length: 264)
Name: NF3047_low_30
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_low_30 |
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| [»] scaffold0171 (3 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 24941283 - 24941038
Alignment:
| Q |
5 |
caggaacacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactg |
104 |
Q |
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|||||||||| |||||||||||||||||||||||||| || || | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24941283 |
caggaacacaaatcaaaggatgagcccttggaagggttacagcggatttctcttccatgttaactttcccattaccatcaacattccattcaaaacactg |
24941184 |
T |
|
| Q |
105 |
aatcattgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24941183 |
aatcattgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgt |
24941084 |
T |
|
| Q |
205 |
cccctcacatcaaacttattatcttcttcactcataaacctctctg |
250 |
Q |
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|||||| |||| |||||||||||||| ||||||||||||||||||| |
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| T |
24941083 |
cccctcgcatcgaacttattatcttcctcactcataaacctctctg |
24941038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 25169719 - 25169474
Alignment:
| Q |
5 |
caggaacacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactg |
104 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25169719 |
caggaacacaaatcaaaggatgagcccttggaagggtcacggccggtttctcttccatgtcaactttcccattaccatcaacattccattcaaaacactg |
25169620 |
T |
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| Q |
105 |
aatcattgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25169619 |
aatcattgcagcaagatttgtgggaacaacttgaagtgctaataagtaaccagggcaagcccttctaccagttccaaatggcataagttggaaattttgc |
25169520 |
T |
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| Q |
205 |
cccctcacatcaaacttattatcttcttcactcataaacctctctg |
250 |
Q |
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||||||| ||| ||||| |||| |||||||| |||||||||||||| |
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| T |
25169519 |
cccctcatatcgaacttgttattttcttcacacataaacctctctg |
25169474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 38807610 - 38807707
Alignment:
| Q |
127 |
ggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgtcccctcacatcaaacttatt |
224 |
Q |
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| T |
38807610 |
ggaacaacttgaagtgctaatgagacaccagggcaagctcttcttccagttccaaatggtataaattggaaattttgtcccctcacatctaacttatt |
38807707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 20061 - 19824
Alignment:
| Q |
10 |
acacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactgaatca |
109 |
Q |
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||||| |||||||||||||||||||||||| || |||| |||||| |||||||||||||| ||||||||| |||| |||||||||||||||||||||| |
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| T |
20061 |
acacaaatcaaaggatgagcccttggaaggctcgtggccgctttctcatccatgttaacttttccattaccaccaaccttccattcaaaacactgaatca |
19962 |
T |
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| Q |
110 |
ttgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgtcccct |
209 |
Q |
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|||| ||||||||||| |||||| | ||||||||||| | ||||||||||||| ||| || ||| ||||||||||||||| |||||||||||||||||| |
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| T |
19961 |
ttgcggcaagatttgtcggaacagcctgaagtgctaatgaagcaccagggcaagacctccttccagttccaaatggcataaattggaaattttgtcccct |
19862 |
T |
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| Q |
210 |
cacatcaaacttattatcttcttcactcataaacctctctg |
250 |
Q |
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| T |
19861 |
cacatcaaacttatt---ctcttcactcataaacctctctg |
19824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 12275 - 12040
Alignment:
| Q |
10 |
acacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactgaatca |
109 |
Q |
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||||| |||||||||||||||||||||||||| | ||||||||||||||||||||| | |||| |||| |||| |||||||||||||||||||||| |
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| T |
12275 |
acacatatcaaaggatgagcccttggaagggtggttgaaggtttctcttccatgttaactgttccatcaccaccaactttccattcaaaacactgaatca |
12176 |
T |
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| Q |
110 |
ttgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgtcccct |
209 |
Q |
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|||||||||||||||| |||||| ||||||||||||| | |||||| |||||| ||| ||| ||| |||| ||||||||||||||||||||||||||||| |
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| T |
12175 |
ttgcagcaagatttgttggaacagcttgaagtgctaatgaggcaccggggcaaccccgtcttccagttccgaatggcataagttggaaattttgtcccct |
12076 |
T |
|
| Q |
210 |
cacatcaaacttattatcttcttcactcataaacctctc |
248 |
Q |
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||||||||||||||| |||||||||||||||||||| |
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| T |
12075 |
cacatcaaacttatt---ctcttcactcataaacctctc |
12040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 25910 - 25673
Alignment:
| Q |
10 |
acacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactgaatca |
109 |
Q |
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||||| ||||||||||||||||||||||||||| || | ||||||||||||| ||||| | ||||||||| |||| ||| |||||||||||||||| | |
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| T |
25910 |
acacacatcaaaggatgagcccttggaagggtcgtcgaagctttctcttccatgctaactgttccattaccaccaaccttcaattcaaaacactgaataa |
25811 |
T |
|
| Q |
110 |
ttgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgtcccct |
209 |
Q |
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| |||||||||||||| |||||||||||||| || || | || |||||| ||||| ||||| ||| ||||||||| |||| |||||||||||||||||| |
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| T |
25810 |
tagcagcaagatttgttggaacaacttgaagcgcgaatgaggtaccaggacaagctcttcttccaaatccaaatggtataaattggaaattttgtcccct |
25711 |
T |
|
| Q |
210 |
cacatcaaacttattatcttcttcactcataaacctctctg |
250 |
Q |
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| |||||||||||| ||||||||||||||||||||| |
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| T |
25710 |
tagatcaaacttatt---cccttcactcataaacctctctg |
25673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 9572 - 9807
Alignment:
| Q |
10 |
acacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattaccatcaacattccattcaaaacactgaatca |
109 |
Q |
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||||| ||||||||||||||||| |||||||||| || ||||||||||||||||||||| | |||| |||| ||| ||||| | |||||| ||||||| |
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| T |
9572 |
acacacatcaaaggatgagccctaggaagggtcaaagctggtttctcttccatgttaactgttccatcaccactaaccttccaataaaaacattgaatca |
9671 |
T |
|
| Q |
110 |
ttgcagcaagatttgtgggaacaacttgaagtgctaaagtggcaccagggcaagcccttctaccacttccaaatggcataagttggaaattttgtcccct |
209 |
Q |
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|||||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||| ||| |||||||||||||| ||| ||||| |||||| | |
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| T |
9672 |
ttgcagcaagatttgttggaacagcttgaagtgctaatgaagcaccagggcaagcccttcttccagttccaaatggcatatattgcaaattctgtccctt |
9771 |
T |
|
| Q |
210 |
cacatcaaacttattatcttcttcactcataaacctctc |
248 |
Q |
| |
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| |||||||||||| ||||||||||||||||||| |
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| T |
9772 |
aaaatcaaacttatt---cccttcactcataaacctctc |
9807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 36735594 - 36735471
Alignment:
| Q |
5 |
caggaacacagatcaaaggatgagcccttggaagggtcaccgccggtttctcttccatgttaactttcccattacca---tcaacattccattcaaaaca |
101 |
Q |
| |
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|||| ||||| || |||||||||||||||| |||||||| | | |||||||||||||| ||||| ||||||||||| | ||| |||||||||||||| |
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| T |
36735594 |
cagggacacaaattaaaggatgagcccttgaaagggtcaacccaggtttctcttccatattaacaatcccattaccacctttaaccttccattcaaaaca |
36735495 |
T |
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| Q |
102 |
ctgaatcattgcagcaagatttgt |
125 |
Q |
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|||||||| |||||||||||||| |
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| T |
36735494 |
ttgaatcatagcagcaagatttgt |
36735471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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