View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3047_low_31 (Length: 258)
Name: NF3047_low_31
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 39494917 - 39494687
Alignment:
| Q |
19 |
aggtagaggtacattttcaactatattttttaagataaattgatttacctaaattgatatcgaaagaatcgaatttaaaactttaaagatgagcacaatt |
118 |
Q |
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| T |
39494917 |
aggtagaggtacattttcagctatattttttaagataaatcggtttatccaaattgatatcgaaagaatcgaatttgaaactttaaggataaacacaatc |
39494818 |
T |
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| Q |
119 |
caaaccaaagatctcaagtcaacatcacagactttttcaactatattgtggtgcgaagtgtctacccaaccaattttgtgaaaatcttcacacgaaaaag |
218 |
Q |
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|||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39494817 |
caaatcaaaggtctcaagtcaacaccacagactttttcaactatattgtggtgcgaagtgtctacccaaccaattttgtgaaaatcttcacacgaaaaag |
39494718 |
T |
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| Q |
219 |
ccctctatatttgaaattgtccatggaattg |
249 |
Q |
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| T |
39494717 |
ccctctatatttgaaattgtccatggaattg |
39494687 |
T |
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