View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3047_low_32 (Length: 254)
Name: NF3047_low_32
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 49494564 - 49494329
Alignment:
| Q |
2 |
ataagttgagtggcttatataataagctctaacggaacaacaacctccatttggaatcccattcacaacgagtggcttgaaatccattacccaaagaaga |
101 |
Q |
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| T |
49494564 |
ataagttgagtggcttatataataagctctaacggaacaacaaccaccatttggaatcccattcacaacgagtggcttgaaatccattacccaaagaaga |
49494465 |
T |
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| Q |
102 |
agttccattgtgtgacttgaaaggaaccttcaaatcacaatgatggttttgtttcagattccctgtcttgatcaaacccaaggcaaacctaacattaagc |
201 |
Q |
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| T |
49494464 |
agttccattgtgtgacttgaaaggaaccttcaaatcacaatgatggttttgtttcagattccctgtcttgatcaaacccaaggcaaacctaacattaagc |
49494365 |
T |
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| Q |
202 |
aaaaccttcaaattaattccataaaccccattgttc |
237 |
Q |
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| T |
49494364 |
aaaaccttcaaattaattccataaaccccattgttc |
49494329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 22601971 - 22602047
Alignment:
| Q |
65 |
cacaacgagtggcttgaaatccattacccaaagaagaagttccattgtgtgacttgaaaggaaccttcaaatcacaa |
141 |
Q |
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| T |
22601971 |
cacaatgagtagcttgaaaaccattccccaaagaagaagaaccattatgtgatttcaaaggcaccttcaaatcacaa |
22602047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 141
Target Start/End: Original strand, 25169756 - 25169856
Alignment:
| Q |
41 |
acaacctccatttggaatcccattcacaacgagtggcttgaaatccattacccaaagaagaagttccattgtgtgacttgaaaggaaccttcaaatcaca |
140 |
Q |
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| T |
25169756 |
acaatctccatttgtaatcccaatcacattcagtagcttgaaacacattccccaaagaagaagaaccattatgtgatttcaaaggtaccttcaaatcaca |
25169855 |
T |
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| Q |
141 |
a |
141 |
Q |
| |
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| T |
25169856 |
a |
25169856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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