View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3047_low_33 (Length: 250)
Name: NF3047_low_33
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 53430790 - 53430998
Alignment:
| Q |
22 |
gggcagctgaaactatcagggacggtttctgagataaccttgatcgtggttgtattgtatcccatgtaacacaagaagttcaagtagtcaatgatgctgg |
121 |
Q |
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|||||| ||||| |||||||||| |||| ||| |||||||| || || ||||| || ||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
53430790 |
gggcagttgaaattatcagggacagtttttgaaataaccttaatagttgttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgctgg |
53430889 |
T |
|
| Q |
122 |
tttcataaactagccctggttggaatgattcggttggtgttatttcccctgctccatagtcataaggtgtggcaatcgaccctaactctgttgtaatggg |
221 |
Q |
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| T |
53430890 |
tttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctgttgtaatggg |
53430989 |
T |
|
| Q |
222 |
acccttcaa |
230 |
Q |
| |
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| ||||||| |
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| T |
53430990 |
atccttcaa |
53430998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 53422827 - 53423035
Alignment:
| Q |
22 |
gggcagctgaaactatcagggacggtttctgagataaccttgatcgtgg-ttgtattgtatcccatgtaacacaagaagttcaagtagtcaatgatgctg |
120 |
Q |
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||||| ||||||||| |||||||||||| ||||||| |||| || |||| ||||||||||||| | |||||||||| ||||||||||||||||| ||||| |
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| T |
53422827 |
gggcaactgaaactaccagggacggtttttgagatagccttaattgtgggttgtattgtatcctaggtaacacaagtagttcaagtagtcaatggtgctg |
53422926 |
T |
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| Q |
121 |
gtttcataaactagccctggttggaatgattcggttggtgttatttcccctgctccatagtcataaggtgtggcaatcgaccctaactctgttgtaatgg |
220 |
Q |
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|||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||| |||||||| || |||||||||| |
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| T |
53422927 |
gtttcataaactagccctggttggaatgattcagatattgtaatttcccctgctccatagtcataaggtgtggcaattgaccctaaatccgttgtaatgg |
53423026 |
T |
|
| Q |
221 |
gacccttca |
229 |
Q |
| |
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|| |||||| |
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| T |
53423027 |
gatccttca |
53423035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 26095177 - 26095384
Alignment:
| Q |
22 |
gggcagctgaaactatcagggacggtttctgagataaccttgatcgtggttgtattgtatcccatgtaacacaagaagttcaagtagtcaatgatgctgg |
121 |
Q |
| |
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|||||| |||||||||||||||| |||| ||| |||||||| || |||||||| || ||||| || ||||||||||||||||||||||||||| |||||| |
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| T |
26095177 |
gggcagttgaaactatcagggacagtttttgaaataaccttaatggtggttgtgttatatcctatataacacaagaagttcaagtagtcaatggtgctgg |
26095276 |
T |
|
| Q |
122 |
tttcataaactagccctggttggaatgattcggttggtgttatttcccctgctccatagtcataaggtgtggcaatcgaccctaactctgttgtaatggg |
221 |
Q |
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|||||||||| ||||||||||||| || ||| |||| |||||| |||| |||||||||||||||||||||||||| ||||||| ||||||| |||||| |
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| T |
26095277 |
tttcataaacgagccctggttggagtggttcagttgttgttatccccccagctccatagtcataaggtgtggcaattaaccctaaatctgttgcaatggg |
26095376 |
T |
|
| Q |
222 |
acccttca |
229 |
Q |
| |
|
|||||||| |
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|
| T |
26095377 |
acccttca |
26095384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 48375027 - 48374819
Alignment:
| Q |
21 |
ggggcagctgaaactatcagggacggtttctgagataaccttgatcgtggttgtattgtatcccatgtaacacaagaagttcaagtagtcaatgatgctg |
120 |
Q |
| |
|
||||||| ||||| |||||||||| |||| ||| |||||||| || |||||||| |||||||| |||||||||||| | ||||||||||||||| |||| |
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| T |
48375027 |
ggggcagttgaaagtatcagggacagtttttgaaataaccttaatagtggttgtgttgtatcctatgtaacacaagtaattcaagtagtcaatggtgcta |
48374928 |
T |
|
| Q |
121 |
gtttcataaactagccctggttggaatgattcggttggtgttatttcccctgctccatagtcataaggtgtggcaatcgaccctaactctgttgtaatgg |
220 |
Q |
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||||||||||| || ||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| |
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| T |
48374927 |
gtttcataaacgagacctggttggaatgattcaattgttgttatgtcccctgctccatagtcataaggtgtggcaactgaccctaaatctgtagtaatgg |
48374828 |
T |
|
| Q |
221 |
gacccttca |
229 |
Q |
| |
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|| |||||| |
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|
| T |
48374827 |
gagccttca |
48374819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 53307629 - 53307837
Alignment:
| Q |
21 |
ggggcagctgaaactatcagggacggtttctgagataaccttgatcgtggttgtattgtatcccatgtaacacaagaagttcaagtagtcaatgatgctg |
120 |
Q |
| |
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||||||| |||||||||||||| |||||| ||||||| ||| | |||||||||||| |||| |||||||||||| |||| | |||||||||| |||| |
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| T |
53307629 |
ggggcagttgaaactatcaggggcggttttagagataatcttcaccgtggttgtattcaatcctatgtaacacaagtagtttaggtagtcaatggtgcta |
53307728 |
T |
|
| Q |
121 |
gtttcataaactagccctggttggaatgattcggttggtgttatttcccctgctccatagtcataaggtgtggcaatcgaccctaactctgttgtaatgg |
220 |
Q |
| |
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||||||||||||||||| |||||||||| ||| |||| ||||||||| ||||||||||||||||||||||||||||| ||||| || | || ||||||| |
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| T |
53307729 |
gtttcataaactagcccgggttggaatggttcagttgttgttatttctcctgctccatagtcataaggtgtggcaattgaccccaaattcgtggtaatgg |
53307828 |
T |
|
| Q |
221 |
gacccttca |
229 |
Q |
| |
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|| |||||| |
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|
| T |
53307829 |
gagccttca |
53307837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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