View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3047_low_36 (Length: 242)
Name: NF3047_low_36
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_low_36 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 10317150 - 10316927
Alignment:
| Q |
19 |
ttatatgagtttctttctcatgtggtcctttctctcttcatcataccttttgctttctatagagttcaattgtcaaagattctaccttacannnnnnnnn |
118 |
Q |
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| T |
10317150 |
ttatatgagtttctttctcatgtggtcctttctcccttcatcacaccttttgctttctatagagttcaattgtcaaagattctaccttacactttttctt |
10317051 |
T |
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| Q |
119 |
nnnnnnnnnnnnggaaatgcatgatattgatatgatatattattgtaggatgattgggttgtgtcaaagattttcatcaagaacaacattgaagttaaaa |
218 |
Q |
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| T |
10317050 |
tctttctttcttggaaatgcatgatattgatatgatatattattgtaggatgattgggttgtgtcaaagattttcatcaagaacaacattgaagttaaaa |
10316951 |
T |
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| Q |
219 |
agactacttcattttccaatcttt |
242 |
Q |
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| T |
10316950 |
agactacttcattttccaatcttt |
10316927 |
T |
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