View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3047_low_6 (Length: 532)
Name: NF3047_low_6
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 48442408 - 48442669
Alignment:
| Q |
16 |
aaaacaacttatagtttataataacccttgattaaactaactgtattccaaacagggaataatggtaacttactatagacaagtcacaaatccaaaacaa |
115 |
Q |
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| T |
48442408 |
aaaacaacttatagtttataataacccttgattaaactaactgtattccaaacagggaataataggaacttactatagacaaatcacaaatccaaaacaa |
48442507 |
T |
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| Q |
116 |
gggtgtatgaaaaagtataatttcaaaccaaatttaagcaaaacctcttaacgtatttgtccataatacttccttcagcggtagcccctgtaacatagaa |
215 |
Q |
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| T |
48442508 |
gggtgtatgaaaaagtataatttcaaaccaaatttaagcaaaacctcttaacgtatttgtccataatacttccttcagcggtagcccctgtaacatagaa |
48442607 |
T |
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| Q |
216 |
gaaaagacaaattcaatgtgcagatgcagaacaaagaaggtgaaattgttaccataaacagc |
277 |
Q |
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| T |
48442608 |
gaaaagacaaattcaatgtgcagatggagaacaaagaaggtgaaattgttaccataaacagc |
48442669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 358 - 520
Target Start/End: Original strand, 48442757 - 48442916
Alignment:
| Q |
358 |
ccatgcgcctgccttccttccatgatggtgatggcgacagttcacacttcaccttccgacttgaacaacaatgcaatggtttgctgtacttgctaacatg |
457 |
Q |
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| T |
48442757 |
ccatgcgcctgccttccttccatgatggtgatggcgacagttcacacttcaccttccgacttgaacaacaatgcaatggtttgctgtacttgctaacatg |
48442856 |
T |
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| Q |
458 |
cgcgggactcacaactgatgatgatgatgccattatccacacaatactcttatctctgctcct |
520 |
Q |
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| T |
48442857 |
cgcgggactcacaac---tgatgatgatgccattatccacacaatactcttatctcttctcct |
48442916 |
T |
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