View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3047_low_9 (Length: 454)
Name: NF3047_low_9
Description: NF3047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3047_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 10 - 437
Target Start/End: Original strand, 26504246 - 26504676
Alignment:
| Q |
10 |
ccaccaccaccacttcttgaatttaaccactttaagctcgctgaaacttggccaccgacattttgtaagattaatacttgtattgatgattataggccaa |
109 |
Q |
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| T |
26504246 |
ccacccccaccacttcttgaatttaaccactttaagctcgctgaaacttggccaccgacattttgtaagattaatacttgtatcgatgattataggccaa |
26504345 |
T |
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| Q |
110 |
tgaagtttattatacacggactttggccaggtgatttaacaaattgcgacccagataaaaagatgaaaccagattatgaaaaggtaaactatattttatt |
209 |
Q |
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| T |
26504346 |
tgaagtttatcatacacggactttggccaggtgatttaacagattgcgacccagataaaaagatgaaaccagattatgaaaaggtaagctatattttatt |
26504445 |
T |
|
| Q |
210 |
tgttcacatttatttttactttaacttgcatgcatgcatgatcaagaattaacttatc---tttattttttgatttattttaccagcttactggaatata |
306 |
Q |
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| T |
26504446 |
tgttcacatttatttttactttaacttgcatgcatgcatgatcaagaattaacttatctttttttttttttgatttattttaccagcttagtggaatata |
26504545 |
T |
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| Q |
307 |
tcctaaactcgttcaagattggccaaatttacataaagttaaaaataagtttccagtggaaactaacaaagagttatggttttttgagtggtataagcat |
406 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26504546 |
tcctaaactcattgaagattggccaaatttacataaagttaaaaataagtttccagtggaaacaaacaaagagttatggttttttgagtggtataagcat |
26504645 |
T |
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| Q |
407 |
ggaacttgttcagcccagttgttcacttttc |
437 |
Q |
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| T |
26504646 |
ggaacttgttcagcccagctgttcacctttc |
26504676 |
T |
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