View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3048-Insertion-10 (Length: 442)
Name: NF3048-Insertion-10
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048-Insertion-10 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 290 - 442
Target Start/End: Complemental strand, 2480674 - 2480522
Alignment:
| Q |
290 |
tttacacaggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaat |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2480674 |
tttacacaggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcggccatattgatgaatggaaaaaat |
2480575 |
T |
|
| Q |
390 |
gccaaaaccaatttccctataccaaaggatcaaactgaagatgccaattccct |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2480574 |
gccaaaaccaatttccctataccaaaggatcaaactgaagatgccaattccct |
2480522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 2480782 - 2480735
Alignment:
| Q |
8 |
ctcagaaattcgtcaccctttactgtaatctacttctccaacactata |
55 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2480782 |
ctcagaaattcgtcaccctttactgtaatctacttctccaacactata |
2480735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 406
Target Start/End: Complemental strand, 47101420 - 47101311
Alignment:
| Q |
297 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaatgccaaaa |
396 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||||||| | ||||| ||||||||||||||||| || || || |||| ||| | ||||||||||| |
|
|
| T |
47101420 |
aggaagagaagggtgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgcgattttaatgagtggtagaaatgccaaaa |
47101321 |
T |
|
| Q |
397 |
ccaatttccc |
406 |
Q |
| |
|
| |||||||| |
|
|
| T |
47101320 |
caaatttccc |
47101311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 407
Target Start/End: Complemental strand, 2428746 - 2428636
Alignment:
| Q |
297 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaatgccaaaa |
396 |
Q |
| |
|
||||| || ||||| ||| |||| |||||||||||||| || | ||||| |||||||||||| |||||||||| | |||| ||||| |||||| |||| |
|
|
| T |
2428746 |
aggaaaaggagggtttggttaggaacatttgagacagctgaagaagcagctagagcatatgatgaagcagccattctaatgagtggaagaaatgcaaaaa |
2428647 |
T |
|
| Q |
397 |
ccaatttccct |
407 |
Q |
| |
|
| ||||||||| |
|
|
| T |
2428646 |
caaatttccct |
2428636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 1726243 - 1726313
Alignment:
| Q |
297 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagc |
367 |
Q |
| |
|
||||||| ||| ||||| |||| |||||||| |||||||| | |||||| |||||||||||| ||||||| |
|
|
| T |
1726243 |
aggaagacaagaatatggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagcagc |
1726313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 407
Target Start/End: Original strand, 49532564 - 49532676
Alignment:
| Q |
295 |
acaggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaatgccaa |
394 |
Q |
| |
|
|||| ||||||||||| ||| |||| ||||||||||| ||||| || ||||| ||||||||||||||||| || || ||||||||||| ||| ||| || |
|
|
| T |
49532564 |
acagaaagagaagggtgtggttaggaacatttgagacggcagaagcagcagcaagagcatatgatcaagctgcaattttgatgaatggtcaaagtgcaaa |
49532663 |
T |
|
| Q |
395 |
aaccaatttccct |
407 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
49532664 |
gactaatttccct |
49532676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University