View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3048-Insertion-5 (Length: 659)
Name: NF3048-Insertion-5
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048-Insertion-5 |
 | |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 7 - 659
Target Start/End: Complemental strand, 26457022 - 26456370
Alignment:
| Q |
7 |
aatatcaatgtgaacaatcatttgcttatatgtacacacctgttgttttaaactgctgagtttattggctaatgctgcaaattgtgcatatgaaattaca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
26457022 |
aatatcaatgtgaacaatcatttgcttatatgtacacacctgttgttttaaactgctgagtttattggctaattctgcaaattgcgcatatgaaattaca |
26456923 |
T |
|
| Q |
107 |
ttttcattgtaaagctggaattttgtggttgaagttggtatgaatttggagatgacagcatcactcacacatgtataaaccttcaattcaaaaaacaaaa |
206 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26456922 |
ttttcattgtaaacctggaattttgtggttgaagttggtatgaatttggagatgacagcatcactcacacatgtataaaccttcaattcaaaaaacaaaa |
26456823 |
T |
|
| Q |
207 |
tatcagagaaataaaacataacaagactaaacagtaatgttgagttgtacttcaaaacaaaagagtattactcacgagcgaataaatttttccaacagcc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26456822 |
tatcagagaaataaaacataacaagactaaacagtaatgttgagttgtacttcaaaacaaaagagtattactcacgagcgaataaatttttctaacagcc |
26456723 |
T |
|
| Q |
307 |
ttttcaaagtattttcaaataacaactttagcatatttacggttccgatgactctaagatacactaacaagcgtctggaccagagcagctttaattgctc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26456722 |
ttttcaaagtattttcaaataacaactttagcatatttacggttccgatgactctaagatacactaacaagcgtctggaccagagcagctttaattgctc |
26456623 |
T |
|
| Q |
407 |
cctataaataactaaaaacaggcaaataaaataacaactaaagttgtcacttattctagcatccctaacagttaagacttatcatggactctaatgtatt |
506 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26456622 |
cctagaaataactaaaaacaggcaaataaaataacaactaaagttgtcacttattctagcatccctaacagttaagacttatcatggactctaatgtatt |
26456523 |
T |
|
| Q |
507 |
ttctcacggtaatatttaccgagaagataaggggataaagtattgctattgatcacaataaacatgtataaggaataaagtaagaaaaattatagataaa |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26456522 |
ttctcacggtaatatttaccgagaagataaggggataaagtattgctactgatcacaataaacatgtataaagaataaagtaagaaaaattatagataaa |
26456423 |
T |
|
| Q |
607 |
gagaatgaaagtgaaaacaacctttgaatgcattaaagtcattagtttccgaa |
659 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
26456422 |
gagaatgaaagtgaaaacaacctttgaatgcattaaagtcattagttcccgaa |
26456370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 29675712 - 29675480
Alignment:
| Q |
8 |
atatcaatgtgaacaatcatttgcttatatgtacacacctgttgttttaaactgctgagtttattggctaatgctgcaaattgtgcatatgaaattacat |
107 |
Q |
| |
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||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||| |
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| T |
29675712 |
atatccatgtgaagaatcacttgcttatatgtacacacctgttgttttaaactgctgagtttattggctaattctgcgaatagcgcatatgaaattacat |
29675613 |
T |
|
| Q |
108 |
tttcattgtaaagctggaattttgtggttgaagttggtatgaatttggagatgacagcatcactcacacatgtataaaccttcaattcaaaa----aaca |
203 |
Q |
| |
|
|||||||||||| ||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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|
| T |
29675612 |
tttcattgtaaaactggaatttcggtgttgacgttggtataaatttggagatgacagcatcactcacacatgtataaaccttcaattcaaaaaaataaaa |
29675513 |
T |
|
| Q |
204 |
aaatatcagagaaataaaacataacaagactaa |
236 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |
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|
| T |
29675512 |
atatatcagagaaataaaacataacaagactaa |
29675480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 446 - 659
Target Start/End: Complemental strand, 29675464 - 29675252
Alignment:
| Q |
446 |
aaagttgtcacttattctagcatccctaacagttaagacttatcatggactctaatgtattttctcacggtaatatttaccgagaagataaggggataaa |
545 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| || |
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|
| T |
29675464 |
aaagctgtcacttatgctagcatccctaacagt-aagacctatcatggactctaatgtattttctcacggtaatattcaccgagaagattaggggattaa |
29675366 |
T |
|
| Q |
546 |
gtattgctattgatcacaataaa--catgtataaggaataaagtaagaaaaattatagataaagagaatgaaagtgaaaacaacctttgaatgcattaaa |
643 |
Q |
| |
|
|||||| ||||| ||||||||| |||||||| |||||||||||||||| || || |||||||| |||||||| |||||||||||||||| ||||| | |
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|
| T |
29675365 |
atattgccattgaacacaataaacgcatgtata--gaataaagtaagaaaagttgtacataaagaggatgaaagtaaaaacaacctttgaattcattaga |
29675268 |
T |
|
| Q |
644 |
gtcattagtttccgaa |
659 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
29675267 |
gtcattagttcccgaa |
29675252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 26 - 281
Target Start/End: Original strand, 11493504 - 11493758
Alignment:
| Q |
26 |
atttgcttatatgtacacacctgttgttttaaactgctgagtttattggctaatgctgcaaattgtgcatatgaaattacattttcattgtaaagctgga |
125 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | | || | ||||||||| || | ||| | | ||||||||| |||| || |||||| | ||| |
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|
| T |
11493504 |
atttgcttaaatgtacacacctgttgttttaactcgttaagccttttggctaattcttcgaatagcgtatatgaaatcccattgtccctgtaaaaccgga |
11493603 |
T |
|
| Q |
126 |
attttgtggttgaagttggtatgaatttggagatgacagcatcactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacat |
225 |
Q |
| |
|
|||||| ||| || ||||||||||| | |||||||||||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
11493604 |
attttggggtagatgttggtatgaactgtgagatgacagcatcacatacacaggtataaaccttcaattcaaaaacaaaaatattagagaaataaaacat |
11493703 |
T |
|
| Q |
226 |
aacaagactaaacagtaatgttgagttgtacttcaaaacaaaagagtattactcac |
281 |
Q |
| |
|
|||||| |||| |||| | ||||||| |||||||||||||||||| ||||||| |
|
|
| T |
11493704 |
ggcaagac-caacactaatatcgagttgtgcttcaaaacaaaagagtaatactcac |
11493758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 659
Target Start/End: Original strand, 11494250 - 11494289
Alignment:
| Q |
620 |
aaaacaacctttgaatgcattaaagtcattagtttccgaa |
659 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
11494250 |
aaaacaacctttgaatgcattagagtcattagttcccgaa |
11494289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 155 - 309
Target Start/End: Original strand, 21530315 - 21530469
Alignment:
| Q |
155 |
gagatgacagcatcactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacataacaagactaaacagtaatgttgagttgt |
254 |
Q |
| |
|
|||||| || |||| |||||||| |||||||| |||||||||||||| ||||||| |||||||||||||||||||| | ||| ||||| ||| ||| | |
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|
| T |
21530315 |
gagatggcaacatctctcacacaagtataaacattcaattcaaaaaa-aaaatattagagaaataaaacataacaaaatcaaaaggtaatattgggttat |
21530413 |
T |
|
| Q |
255 |
acttcaaaacaaaa-gagtattactcacgagcgaataaatttttccaacagccttt |
309 |
Q |
| |
|
|||||||||||||| ||||||||| ||| | ||||||||||||| |||| ||||| |
|
|
| T |
21530414 |
acttcaaaacaaaatgagtattacacacaaaggaataaatttttctaacaaccttt |
21530469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 40 - 298
Target Start/End: Original strand, 21527550 - 21527807
Alignment:
| Q |
40 |
acacacctgttgttttaaactgctgagtttattggctaatgctgcaaattgtgcatatgaaattacattttcattgtaaagctggaattttgtggttgaa |
139 |
Q |
| |
|
|||||||||||||||||| || | || ||||||||| ||| || ||||| | |||||||| ||| |||| || || ||| ||||||| || ||| |
|
|
| T |
21527550 |
acacacctgttgttttaagcttccgattttattggccaattcttcaaatagctcatatgaacttaactttttctttaaatactgaaattttggggatgat |
21527649 |
T |
|
| Q |
140 |
gttggtatgaatttggagatgacagcatcactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacataacaagactaaaca |
239 |
Q |
| |
|
||||||| |||| |||||| ||||||||||| |||||||||||| | ||||| |||||| || ||| |||||||||||||||||||| || ||| |
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|
| T |
21527650 |
gttggtagaaattgtgagatggcagcatcactcgcacatgtataaatttgcaattaaaaaaa--aattattagagaaataaaacataacaaaaccaaaag |
21527747 |
T |
|
| Q |
240 |
gtaatgttgagttgtacttcaaaacaaaa-gagtattactcacgagcgaataaatttttc |
298 |
Q |
| |
|
||||| ||| ||| |||||||||||||| ||||||||| ||| | |||| |||||||| |
|
|
| T |
21527748 |
gtaatattggattgcacttcaaaacaaaatgagtattacacacaaaggaatgaatttttc |
21527807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 67 - 186
Target Start/End: Complemental strand, 21531571 - 21531452
Alignment:
| Q |
67 |
tttattggctaatgctgcaaattgtgcatatgaaattacattttcattgtaaagctggaattttgtggttgaagttggtatgaatttggagatgacagca |
166 |
Q |
| |
|
||||||||||||| || ||||| | | |||||| |||||||||| ||| || | |||||||| | ||||| |||||||| |||||||||||||||||| |
|
|
| T |
21531571 |
tttattggctaattcttcaaatagctcgtatgaacttacattttccttgaaataccggaattttatagttgatgttggtataaatttggagatgacagca |
21531472 |
T |
|
| Q |
167 |
tcactcacacatgtataaac |
186 |
Q |
| |
|
|||||| ||||||| ||||| |
|
|
| T |
21531471 |
tcactcgcacatgtctaaac |
21531452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 40 - 277
Target Start/End: Original strand, 21525201 - 21525434
Alignment:
| Q |
40 |
acacacctgttgttttaaactgctgagtttattggctaatgctgcaaattgtgcatatgaaattacattttcattgtaaagctggaattttgtggttgaa |
139 |
Q |
| |
|
|||||| ||||||||||| || |||| ||||||||| ||| | | ||| | | ||||||||||||||| | || || | ||||||||| || ||| |
|
|
| T |
21525201 |
acacacatgttgttttaagcttctgattttattggccaattcctcgaatagctcgtatgaaattacatttccctttaaataccggaattttgggggtgat |
21525300 |
T |
|
| Q |
140 |
gttggtatgaatttggagatgacagcatcactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacataacaagactaaaca |
239 |
Q |
| |
|
|||| || |||| |||||| ||||| ||||| ||||||||||||||||||||| ||||| ||| ||| ||| |||||||||||||||| || || | |
|
|
| T |
21525301 |
gttgatagaaattgtgagatggcagca-cactcgcacatgtataaaccttcaatt--aaaaaaaaattataagaaaaataaaacataacaaaaccaa--a |
21525395 |
T |
|
| Q |
240 |
gtaatgttgagttgtacttcaaaacaaaa-gagtattac |
277 |
Q |
| |
|
||||| ||| |||| |||||||||||||| ||||||||| |
|
|
| T |
21525396 |
gtaatattgggttgcacttcaaaacaaaacgagtattac |
21525434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 309
Target Start/End: Original strand, 21531780 - 21531935
Alignment:
| Q |
155 |
gagatgacagcatcactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacataacaagactaaacagtaatgttgagttgt |
254 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||| ||||||| |||||| | |||| |||||||||||| ||||||| | ||| ||||| ||| ||| |
|
|
| T |
21531780 |
gagatggcagcatctctcacacaagtataaacattcaattaaaaaaaatatatattagagaaataaaatataacaaaatcaaaaggtaatattgggttac |
21531879 |
T |
|
| Q |
255 |
acttcaaaacaaaa-gagtattactcacgagcgaataaatttttccaacagccttt |
309 |
Q |
| |
|
||||||||||||| ||||||||| ||| | ||||||||||||||| || ||||| |
|
|
| T |
21531880 |
tcttcaaaacaaaatgagtattacacacaaaggaataaatttttccagcaaccttt |
21531935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 227
Target Start/End: Complemental strand, 21527456 - 21527299
Alignment:
| Q |
67 |
tttattggctaatgctgcaaattgtgcatatgaaattacattttcattgtaaagctggaattttgtggttgaagttggtatgaatttggagatgacagca |
166 |
Q |
| |
|
||||||||||||| || | ||| | |||||||| |||||||||| |||||| | ||||||| |||||| |||||||| |||| |||||| ||| | |
|
|
| T |
21527456 |
tttattggctaattcttcgaatagctcatatgaacttacattttccttgtaataccaaaattttggggttgatgttggtataaattgtgagatggcagta |
21527357 |
T |
|
| Q |
167 |
tcactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacataa |
227 |
Q |
| |
|
|||||| ||||||| |||||||||| | ||||| || ||||| |||||| ||||||||| |
|
|
| T |
21527356 |
tcactcgcacatgtctaaaccttcatt---aaaaaaaacatatccgagaaagaaaacataa |
21527299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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