View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048-Insertion-6 (Length: 683)
Name: NF3048-Insertion-6
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 8 - 683
Target Start/End: Complemental strand, 3624504 - 3623851
Alignment:
| Q |
8 |
ttccctttatgacttcattgtgccattgggtagtacaattaatttttcacttttgctttggggcatcctcttgttatggtaaatgtggtccctcagttgt |
107 |
Q |
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| T |
3624504 |
ttccctttatgatttcattgtgccattgggtagtacaattaatttttcacttttgctttggggcatcctcttgttgtggtaaatgtggtccctcagttgt |
3624405 |
T |
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| Q |
108 |
aatacaggtcaagctctagctaataagttgttagatgattgttcaatagctcacatggttaaaatgatctgattgaattttacacacaaaaactgctaat |
207 |
Q |
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| T |
3624404 |
aatacaggtcaagctctagctaataatct------tga------aattgctcacttggttaaaatgatatgattgaattttacacacaaaaactgctaat |
3624317 |
T |
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| Q |
208 |
tcttcaatatgcatctcgaaattggtcacttggctgaaaaagaagtccataaaaaattacaatctgattggattttatacacaaaaacagatgatcagga |
307 |
Q |
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| T |
3624316 |
tcttcaatatgcatctcgaaattggtcacttggctgaaaaagaagtccataaaaaattacaatctgattggattttatacacaaaaacagatgatcagga |
3624217 |
T |
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| Q |
308 |
gttctaatcgggtctggattgaaattgaggtgtctattgagcaattctccggtagttaggccatttga-ttgttttcaaagtgctagttggtccatactc |
406 |
Q |
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| T |
3624216 |
gttctaatcgggtctggattgaaattgaggtgtctattgagcaattctccggcagttaggccatttgatttgttttcaaagtgctagttggtccatactc |
3624117 |
T |
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| Q |
407 |
ttaaatgacagcccaaaacagtttttaaaaacaccataaaataacaagtttaacggcaaattccatcggtagctaactacaattcatcgatagttaacta |
506 |
Q |
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| T |
3624116 |
ttaaatgacagtccaaaacagtttttaaaaacaccataaaatgacaaatttaactgcaaattccgtcggtagctaactacaattcatcgatagtt----- |
3624022 |
T |
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| Q |
507 |
ccgatgaggctatattgatagtttcgtggtattacataacaaacttagacgtgggaacgtcaattttctttttcttatgcacaaaagtttttgatggcat |
606 |
Q |
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| T |
3624021 |
------aggctatattggtagtttcgtggtattacataacaaactttgacgtgggaacgtcaattttctttttcttatgcacaaaagtttttgatggcat |
3623928 |
T |
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| Q |
607 |
agacccacctgtcaaaaacacccccgtattttcatatttgcctttgcactaaaactttttctctttcacccactttc |
683 |
Q |
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| T |
3623927 |
agacccacctgtcaaaaacacccccgtattttcatatttgcctttgcactaaaactttttctctttcacccactttc |
3623851 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 474
Target Start/End: Original strand, 3626880 - 3626921
Alignment:
| Q |
433 |
aaaaacaccataaaataacaagtttaacggcaaattccatcg |
474 |
Q |
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| T |
3626880 |
aaaaacaccatgaaataacaagtttaactgcaaattccatcg |
3626921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 485
Target Start/End: Original strand, 33487217 - 33487267
Alignment:
| Q |
435 |
aaacaccataaaataacaagtttaacggcaaattccatcggtagctaacta |
485 |
Q |
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| T |
33487217 |
aaacaccataaaataacaaatttaacttcaaattctatcggtagttaacta |
33487267 |
T |
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