View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048-Insertion-8 (Length: 537)
Name: NF3048-Insertion-8
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 537
Target Start/End: Original strand, 15603609 - 15604164
Alignment:
| Q |
8 |
ggtttgtgctaatgtgaaaagacttacgacttaaggatgctgagcaagtttctggtgaaggattcaataatgttgcagcttatgttatgatcaatgtgct |
107 |
Q |
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| T |
15603609 |
ggtttgtgctaatgtgaaaagacttacgacttaaggatgcagagcaagtttttggtgaaggattcaataatgtcgcaacttatgttatgatcaatgtgct |
15603708 |
T |
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| Q |
108 |
ttgttaagagggttagtttgaagaatcacctgtcttgcaggtgcagtnnnnnnntggaagatacttgcttaagttgtaactgatgaaataattctacgca |
207 |
Q |
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| T |
15603709 |
ttgttaagagggttagtttgaagaatcacctgtcttgcaggtgcagtaaaaaa-tggaagatacttgcttaagttgtaactgatgaaataattctacgca |
15603807 |
T |
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| Q |
208 |
ctctcactatagatctcttttaagactaaaagtaggtaaggttaaagtgatgtactatgtattggggtcactacgacttttgttttgattaaatat---- |
303 |
Q |
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| T |
15603808 |
ctctcactatagatctcttttaagactaaaagtaggtaaggttaaagtgatgtactatgtattggggtcactatgactttagttttgattaaatatattt |
15603907 |
T |
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| Q |
304 |
------------aatttgatagtgtagttattgtaactttcaatttgatattgtagttac------------tgtaaggttcaatttgatattgtatttg |
379 |
Q |
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| T |
15603908 |
actgtaagtttcaatttgatattgtagttattgtaactttcaatttgatattgtagttactattgtagtgagtgtaaggttcaatttgataatgtagttg |
15604007 |
T |
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| Q |
380 |
gaaagtgttggttttttaagccttgaaaataaaatccctatttcttccctattgttgatttctgtgtaatttttcattttatagctactagannnnnnnn |
479 |
Q |
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| T |
15604008 |
gaaagtgttggttttttaagccttgaaaat-aaatccctctttcttccctattgttgatttctgtatgattttaccttttatagctactagatttttttt |
15604106 |
T |
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| Q |
480 |
ccttttcagtttgttgtagttttcttgcagacctggtagaattcaaatcatatacgta |
537 |
Q |
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| T |
15604107 |
ccttttcagtttgttgtagttttcttgcagacctggtagaattcaaatcatatacgta |
15604164 |
T |
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