View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048-Insertion-9 (Length: 420)
Name: NF3048-Insertion-9
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048-Insertion-9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 6 - 420
Target Start/End: Original strand, 10871037 - 10871442
Alignment:
| Q |
6 |
caattaagtctcccctaatgaatcttcacaagtgtatgtgtgagatagttaagtgaaacggttatctccaacaagaactaaccatgatggaagttggta- |
104 |
Q |
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| T |
10871037 |
caattaagtctcccctaatgaatcttcacaagtgtatgtgtgagata----------acggttatctccaacaagaactaactatgatggaagttggtat |
10871126 |
T |
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| Q |
105 |
-gcaacactctgatttaaactagttggaattcaccaatttatgtcagtgcatcctcttccttatccaatttgaggtatgcttcattcagtttgccatgac |
203 |
Q |
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| T |
10871127 |
agcaacactctgatttaaactagttggaattcaccaatttatgtcagtgcatcctct-ccttatccaatttgaggtatgcttcattcagtttgccatgac |
10871225 |
T |
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| Q |
204 |
taaagcaattatttgagaatgcaagatttcgccatttttggtatgaagaaataaagtcatcctaaagtagaagaaccatagaagtgttcccaatttgtta |
303 |
Q |
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| T |
10871226 |
taaagcaattatttgagaatgcaagatttcgccatttttggtatgaagaaataaagtcatcctaaagtagaagagccatagaagtgttcccaatttgtta |
10871325 |
T |
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| Q |
304 |
aaacgaatcacataattgatagtaaaaaagtagtatgtcggtctatatcgatcttccagacttttacctacgacttaacatatttagtcataaattttgt |
403 |
Q |
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| T |
10871326 |
aaacgaatcacataattgatagtaaaaaagtagtatgtcggtctacatcgatcttccagacttttacctacgacttaacatatttagtcataaattttgt |
10871425 |
T |
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| Q |
404 |
ctgtccatataagcgta |
420 |
Q |
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| T |
10871426 |
ctgtccatataagcgta |
10871442 |
T |
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