View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3048R-Insertion-10 (Length: 258)

Name: NF3048R-Insertion-10
Description: NF3048R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3048R-Insertion-10
NF3048R-Insertion-10
[»] chr1 (22 HSPs)
chr1 (8-72)||(4080963-4081027)
chr1 (191-227)||(41317590-41317626)
chr1 (193-227)||(25227303-25227337)
chr1 (194-227)||(4280130-4280163)
chr1 (194-227)||(5765994-5766027)
chr1 (194-227)||(7763753-7763786)
chr1 (194-227)||(9413329-9413362)
chr1 (194-227)||(17483733-17483766)
chr1 (194-227)||(21631111-21631144)
chr1 (194-227)||(25509209-25509242)
chr1 (194-227)||(27037269-27037302)
chr1 (194-227)||(27037534-27037567)
chr1 (194-227)||(28885842-28885875)
chr1 (194-227)||(36695119-36695152)
chr1 (194-227)||(36711220-36711253)
chr1 (194-227)||(37850443-37850476)
chr1 (194-227)||(38613740-38613773)
chr1 (194-227)||(39750385-39750418)
chr1 (194-227)||(42276165-42276198)
chr1 (194-227)||(43456625-43456658)
chr1 (191-227)||(23530810-23530846)
chr1 (191-227)||(29437858-29437894)
[»] chr5 (11 HSPs)
chr5 (180-227)||(4976294-4976341)
chr5 (194-227)||(21069637-21069670)
chr5 (194-230)||(20142260-20142296)
chr5 (194-227)||(3028013-3028046)
chr5 (194-227)||(7940452-7940485)
chr5 (194-227)||(8949812-8949845)
chr5 (194-227)||(14435830-14435863)
chr5 (194-227)||(19571943-19571976)
chr5 (194-227)||(23260142-23260175)
chr5 (194-227)||(23286478-23286511)
chr5 (194-227)||(43060415-43060448)
[»] chr6 (13 HSPs)
chr6 (192-234)||(13866591-13866633)
chr6 (194-227)||(402625-402658)
chr6 (194-227)||(2090658-2090691)
chr6 (197-234)||(11104573-11104610)
chr6 (194-227)||(13321330-13321363)
chr6 (194-227)||(13901641-13901674)
chr6 (194-227)||(15498629-15498662)
chr6 (194-227)||(16122518-16122551)
chr6 (194-227)||(23604460-23604493)
chr6 (194-227)||(25045647-25045680)
chr6 (194-227)||(31091445-31091478)
chr6 (194-227)||(34915547-34915580)
chr6 (191-227)||(32614986-32615022)
[»] chr3 (27 HSPs)
chr3 (192-234)||(45513634-45513676)
chr3 (191-227)||(4759085-4759121)
chr3 (187-227)||(24087339-24087379)
chr3 (193-227)||(15996777-15996811)
chr3 (193-226)||(1327603-1327636)
chr3 (194-227)||(1450507-1450540)
chr3 (194-227)||(4759355-4759388)
chr3 (194-227)||(8321925-8321958)
chr3 (194-227)||(10015793-10015826)
chr3 (194-227)||(19897840-19897873)
chr3 (194-227)||(28875255-28875288)
chr3 (193-230)||(31531412-31531449)
chr3 (194-227)||(36099228-36099261)
chr3 (194-227)||(36584710-36584743)
chr3 (194-227)||(41392884-41392917)
chr3 (194-227)||(42801521-42801554)
chr3 (194-227)||(43701178-43701211)
chr3 (194-227)||(46845496-46845529)
chr3 (194-227)||(48909872-48909905)
chr3 (194-227)||(51283802-51283835)
chr3 (194-227)||(53686736-53686769)
chr3 (191-227)||(4024315-4024351)
chr3 (191-227)||(9499501-9499537)
chr3 (194-226)||(12906418-12906450)
chr3 (194-226)||(48904268-48904300)
chr3 (191-227)||(50433125-50433161)
chr3 (191-227)||(50517526-50517562)
[»] chr7 (12 HSPs)
chr7 (190-227)||(31581673-31581710)
chr7 (192-227)||(32118167-32118202)
chr7 (194-227)||(2290020-2290053)
chr7 (194-227)||(9140272-9140305)
chr7 (194-227)||(27813496-27813529)
chr7 (194-227)||(33381577-33381610)
chr7 (194-227)||(34012521-34012554)
chr7 (194-226)||(1574719-1574751)
chr7 (194-230)||(7400129-7400165)
chr7 (191-227)||(41026100-41026136)
chr7 (194-226)||(42541864-42541896)
chr7 (191-227)||(43093413-43093449)
[»] chr2 (23 HSPs)
chr2 (186-227)||(12890212-12890253)
chr2 (194-227)||(18970733-18970766)
chr2 (191-230)||(25523761-25523800)
chr2 (192-227)||(28566149-28566184)
chr2 (193-227)||(2060315-2060349)
chr2 (194-227)||(2200244-2200277)
chr2 (194-227)||(3095299-3095332)
chr2 (194-227)||(7116303-7116336)
chr2 (194-227)||(8912878-8912911)
chr2 (194-227)||(11201947-11201980)
chr2 (194-227)||(18374708-18374741)
chr2 (194-227)||(21220989-21221022)
chr2 (194-227)||(24345682-24345715)
chr2 (194-227)||(26322297-26322330)
chr2 (194-227)||(31751069-31751102)
chr2 (194-227)||(41422512-41422545)
chr2 (194-227)||(41494626-41494659)
chr2 (194-226)||(2199978-2200010)
chr2 (191-227)||(7492108-7492144)
chr2 (187-227)||(11201676-11201716)
chr2 (194-226)||(13215825-13215857)
chr2 (194-226)||(23083515-23083547)
chr2 (191-227)||(36750888-36750924)
[»] scaffold0237 (1 HSPs)
scaffold0237 (194-230)||(6610-6646)
[»] chr8 (20 HSPs)
chr8 (194-230)||(18111976-18112012)
chr8 (187-227)||(44888673-44888713)
chr8 (192-227)||(30512766-30512801)
chr8 (194-229)||(45283794-45283829)
chr8 (193-227)||(17069848-17069882)
chr8 (193-227)||(17578391-17578425)
chr8 (194-228)||(32475230-32475264)
chr8 (194-227)||(2152244-2152277)
chr8 (194-227)||(5162304-5162337)
chr8 (194-227)||(6050559-6050592)
chr8 (194-227)||(11798605-11798638)
chr8 (194-227)||(12802611-12802644)
chr8 (194-227)||(18111716-18111749)
chr8 (194-227)||(18641384-18641417)
chr8 (194-227)||(23487064-23487097)
chr8 (194-227)||(23688169-23688202)
chr8 (194-227)||(38967141-38967174)
chr8 (194-227)||(45260223-45260256)
chr8 (191-227)||(12824943-12824979)
chr8 (194-226)||(44580616-44580648)
[»] scaffold0240 (2 HSPs)
scaffold0240 (192-227)||(18760-18795)
scaffold0240 (194-227)||(18497-18530)
[»] chr4 (24 HSPs)
chr4 (192-227)||(25124250-25124285)
chr4 (192-227)||(31937074-31937109)
chr4 (187-234)||(54878012-54878059)
chr4 (189-227)||(49373697-49373735)
chr4 (194-227)||(4415965-4415998)
chr4 (194-227)||(6807429-6807462)
chr4 (194-227)||(7698473-7698506)
chr4 (194-227)||(18872717-18872750)
chr4 (194-227)||(20455185-20455218)
chr4 (194-227)||(24154187-24154220)
chr4 (194-227)||(28495380-28495413)
chr4 (194-227)||(28501390-28501423)
chr4 (194-227)||(29520168-29520201)
chr4 (194-227)||(32899222-32899255)
chr4 (194-227)||(39670990-39671023)
chr4 (194-227)||(46949992-46950025)
chr4 (194-227)||(49793091-49793124)
chr4 (194-227)||(53564360-53564393)
chr4 (194-227)||(55563131-55563164)
chr4 (194-227)||(56432518-56432551)
chr4 (194-230)||(625967-626003)
chr4 (194-226)||(21265220-21265252)
chr4 (194-226)||(30523764-30523796)
chr4 (197-225)||(30783678-30783706)
[»] scaffold0674 (1 HSPs)
scaffold0674 (194-227)||(5151-5184)
[»] scaffold0549 (1 HSPs)
scaffold0549 (194-227)||(10186-10219)
[»] scaffold0250 (1 HSPs)
scaffold0250 (194-227)||(9166-9199)
[»] scaffold0163 (1 HSPs)
scaffold0163 (194-227)||(1450-1483)
[»] scaffold0161 (1 HSPs)
scaffold0161 (194-227)||(3438-3471)
[»] scaffold0107 (1 HSPs)
scaffold0107 (194-227)||(48654-48687)
[»] scaffold0039 (1 HSPs)
scaffold0039 (194-227)||(93785-93818)
[»] scaffold0020 (1 HSPs)
scaffold0020 (194-227)||(164214-164247)


Alignment Details
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 4081027 - 4080963
Alignment:
Q  8 aaggatggtggtgatgaatgtgaattttaaaaggagaagagtcattagaaacaaaattgtggaac 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4081027 aaggatggtggtgatgaatgtgaattttaaaaggagaagagtcattagaaacaaaattgtggaac 4080963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 41317590 - 41317626
Alignment:
Q  191 aagtactacctctgtccctaattataagacccttttg 227  Q
    |||||||||||| ||||||||||||||||||||||||    
T  41317590 aagtactacctccgtccctaattataagacccttttg 41317626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 25227303 - 25227337
Alignment:
Q  193 gtactacctctgtccctaattataagacccttttg 227  Q
    |||||||||| ||||||||||||||||||||||||    
T  25227303 gtactacctccgtccctaattataagacccttttg 25227337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 4280163 - 4280130
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  4280163 tactacctccgtccctaattataagacccttttg 4280130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 5766027 - 5765994
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  5766027 tactacctccgtccctaattataagacccttttg 5765994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 7763786 - 7763753
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  7763786 tactacctccgtccctaattataagacccttttg 7763753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 9413362 - 9413329
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  9413362 tactacctccgtccctaattataagacccttttg 9413329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 17483733 - 17483766
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  17483733 tactacctccgtccctaattataagacccttttg 17483766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 21631144 - 21631111
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  21631144 tactacctccgtccctaattataagacccttttg 21631111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 25509209 - 25509242
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  25509209 tactacctccgtccctaattataagacccttttg 25509242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 27037269 - 27037302
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  27037269 tactacctccgtccctaattataagacccttttg 27037302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 27037567 - 27037534
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  27037567 tactacctccgtccctaattataagacccttttg 27037534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 28885842 - 28885875
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  28885842 tactacctccgtccctaattataagacccttttg 28885875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 36695152 - 36695119
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    |||| |||||||||||||||||||||||||||||    
T  36695152 tactccctctgtccctaattataagacccttttg 36695119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 36711253 - 36711220
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    |||| |||||||||||||||||||||||||||||    
T  36711253 tactccctctgtccctaattataagacccttttg 36711220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 37850476 - 37850443
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    |||||||||||||||||||||||||| |||||||    
T  37850476 tactacctctgtccctaattataagatccttttg 37850443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 38613773 - 38613740
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  38613773 tactacctccgtccctaattataagacccttttg 38613740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 39750418 - 39750385
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    |||| |||||||||||||||||||||||||||||    
T  39750418 tactccctctgtccctaattataagacccttttg 39750385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 42276198 - 42276165
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  42276198 tactacctccgtccctaattataagacccttttg 42276165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 43456658 - 43456625
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  43456658 tactacctccgtccctaattataagacccttttg 43456625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 23530846 - 23530810
Alignment:
Q  191 aagtactacctctgtccctaattataagacccttttg 227  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  23530846 aagtactacctccgtccctaattataaggcccttttg 23530810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 29437894 - 29437858
Alignment:
Q  191 aagtactacctctgtccctaattataagacccttttg 227  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  29437894 aagtactacctccgtccctaattataagactcttttg 29437858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 4976341 - 4976294
Alignment:
Q  180 tttagtttattaagtactacctctgtccctaattataagacccttttg 227  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  4976341 tttagtttatttagtactacctccgtccctaattataagacccttttg 4976294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 21069637 - 21069670
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||||||||||||||||||||||||||||    
T  21069637 tactacctctgtccctaattataagacccttttg 21069670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 20142296 - 20142260
Alignment:
Q  194 tactacctctgtccctaattataagacccttttggaa 230  Q
    ||||||||| |||||||||||||||||||||||||||    
T  20142296 tactacctccgtccctaattataagacccttttggaa 20142260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 3028013 - 3028046
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  3028013 tactacctccgtccctaattataagacccttttg 3028046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 7940452 - 7940485
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  7940452 tactacctccgtccctaattataagacccttttg 7940485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 8949812 - 8949845
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  8949812 tactacctccgtccctaattataagacccttttg 8949845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 14435830 - 14435863
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  14435830 tactacctccgtccctaattataagacccttttg 14435863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 19571976 - 19571943
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  19571976 tactacctccgtccctaattataagacccttttg 19571943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 23260175 - 23260142
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  23260175 tactacctccgtccctaattataagacccttttg 23260142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 23286511 - 23286478
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  23286511 tactacctccgtccctaattataagacccttttg 23286478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 43060448 - 43060415
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  43060448 tactacctccgtccctaattataagacccttttg 43060415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 13866591 - 13866633
Alignment:
Q  192 agtactacctctgtccctaattataagacccttttggaagaaa 234  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  13866591 agtactacctccgtccctaattataagacccttttggaagaaa 13866633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 402658 - 402625
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  402658 tactacctccgtccctaattataagacccttttg 402625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 2090658 - 2090691
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  2090658 tactacctccgtccctaattataagacccttttg 2090691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 11104573 - 11104610
Alignment:
Q  197 tacctctgtccctaattataagacccttttggaagaaa 234  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  11104573 tacctttgtccctaattataagatccttttggaagaaa 11104610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 13321363 - 13321330
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  13321363 tactacctccgtccctaattataagacccttttg 13321330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 13901641 - 13901674
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  13901641 tactacctccgtccctaattataagacccttttg 13901674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 15498629 - 15498662
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  15498629 tactacctccgtccctaattataagacccttttg 15498662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 16122551 - 16122518
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  16122551 tactacctccgtccctaattataagacccttttg 16122518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 23604460 - 23604493
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  23604460 tactacctccgtccctaattataagacccttttg 23604493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 25045680 - 25045647
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  25045680 tactacctccgtccctaattataagacccttttg 25045647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 31091445 - 31091478
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  31091445 tactacctccgtccctaattataagacccttttg 31091478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 34915580 - 34915547
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  34915580 tactacctccgtccctaattataagacccttttg 34915547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 32614986 - 32615022
Alignment:
Q  191 aagtactacctctgtccctaattataagacccttttg 227  Q
    |||||||||||| |||||||||||||||| |||||||    
T  32614986 aagtactacctccgtccctaattataagaaccttttg 32615022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 45513676 - 45513634
Alignment:
Q  192 agtactacctctgtccctaattataagacccttttggaagaaa 234  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  45513676 agtactacctccgtccctaattataagacccttttgaaagaaa 45513634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 4759085 - 4759121
Alignment:
Q  191 aagtactacctctgtccctaattataagacccttttg 227  Q
    |||||||||||| ||||||||||||||||||||||||    
T  4759085 aagtactacctccgtccctaattataagacccttttg 4759121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 24087379 - 24087339
Alignment:
Q  187 tattaagtactacctctgtccctaattataagacccttttg 227  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  24087379 tattaaatactacctccgtccctaattataagacccttttg 24087339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 227
Target Start/End: Complemental strand, 15996811 - 15996777
Alignment:
Q  193 gtactacctctgtccctaattataagacccttttg 227  Q
    |||||||||| ||||||||||||||||||||||||    
T  15996811 gtactacctccgtccctaattataagacccttttg 15996777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 1327603 - 1327636
Alignment:
Q  193 gtactacctctgtccctaattataagaccctttt 226  Q
    |||||||||| |||||||||||||||||||||||    
T  1327603 gtactacctcagtccctaattataagaccctttt 1327636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 1450540 - 1450507
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    |||||| |||||||||||||||||||||||||||    
T  1450540 tactacatctgtccctaattataagacccttttg 1450507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 4759388 - 4759355
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  4759388 tactacctccgtccctaattataagacccttttg 4759355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 8321925 - 8321958
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  8321925 tactacctccgtccctaattataagacccttttg 8321958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 10015826 - 10015793
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  10015826 tactacctccgtccctaattataagacccttttg 10015793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 19897873 - 19897840
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  19897873 tactacctccgtccctaattataagacccttttg 19897840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 28875288 - 28875255
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  28875288 tactacctccgtccctaattataagacccttttg 28875255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 31531449 - 31531412
Alignment:
Q  193 gtactacctctgtccctaattataagacccttttggaa 230  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  31531449 gtactccctccgtccctaattataagacccttttggaa 31531412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 36099261 - 36099228
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    |||| |||||||||||||||||||||||||||||    
T  36099261 tactccctctgtccctaattataagacccttttg 36099228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 36584710 - 36584743
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||||||||||||||||||||| ||||||    
T  36584710 tactacctctgtccctaattataagactcttttg 36584743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 41392917 - 41392884
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  41392917 tactacctccgtccctaattataagacccttttg 41392884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 42801521 - 42801554
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  42801521 tactacctccgtccctaattataagacccttttg 42801554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 43701178 - 43701211
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    |||| |||||||||||||||||||||||||||||    
T  43701178 tactccctctgtccctaattataagacccttttg 43701211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 46845529 - 46845496
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  46845529 tactacctccgtccctaattataagacccttttg 46845496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 48909872 - 48909905
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  48909872 tactacctcagtccctaattataagacccttttg 48909905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 51283802 - 51283835
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    |||| |||||||||||||||||||||||||||||    
T  51283802 tactccctctgtccctaattataagacccttttg 51283835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 53686736 - 53686769
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    |||||||||||||||||||||||| |||||||||    
T  53686736 tactacctctgtccctaattataaaacccttttg 53686769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 4024351 - 4024315
Alignment:
Q  191 aagtactacctctgtccctaattataagacccttttg 227  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  4024351 aagtactccctccgtccctaattataagacccttttg 4024315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 9499537 - 9499501
Alignment:
Q  191 aagtactacctctgtccctaattataagacccttttg 227  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  9499537 aagtactccctccgtccctaattataagacccttttg 9499501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 12906450 - 12906418
Alignment:
Q  194 tactacctctgtccctaattataagaccctttt 226  Q
    ||||||||| |||||||||||||||||||||||    
T  12906450 tactacctccgtccctaattataagaccctttt 12906418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 48904300 - 48904268
Alignment:
Q  194 tactacctctgtccctaattataagaccctttt 226  Q
    ||||||||| |||||||||||||||||||||||    
T  48904300 tactacctccgtccctaattataagaccctttt 48904268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 50433125 - 50433161
Alignment:
Q  191 aagtactacctctgtccctaattataagacccttttg 227  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  50433125 aagtactacctccgtccctaattataaggcccttttg 50433161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 50517562 - 50517526
Alignment:
Q  191 aagtactacctctgtccctaattataagacccttttg 227  Q
    |||||||||||| |||||||||||||||| |||||||    
T  50517562 aagtactacctccgtccctaattataagatccttttg 50517526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 31581673 - 31581710
Alignment:
Q  190 taagtactacctctgtccctaattataagacccttttg 227  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  31581673 taagtactacctccgtccctaattataagacccttttg 31581710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 32118202 - 32118167
Alignment:
Q  192 agtactacctctgtccctaattataagacccttttg 227  Q
    ||||||||||| ||||||||||||||||||||||||    
T  32118202 agtactacctccgtccctaattataagacccttttg 32118167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 2290053 - 2290020
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  2290053 tactacctccgtccctaattataagacccttttg 2290020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 9140272 - 9140305
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||||||||||||||||||| ||||||||    
T  9140272 tactacctctgtccctaattataaggcccttttg 9140305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 27813496 - 27813529
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  27813496 tactacctccgtccctaattataagacccttttg 27813529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 33381610 - 33381577
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  33381610 tactacctccgtccctaattataagacccttttg 33381577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 34012554 - 34012521
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  34012554 tactacctccgtccctaattataagacccttttg 34012521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 1574719 - 1574751
Alignment:
Q  194 tactacctctgtccctaattataagaccctttt 226  Q
    ||||||||| |||||||||||||||||||||||    
T  1574719 tactacctccgtccctaattataagaccctttt 1574751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 7400129 - 7400165
Alignment:
Q  194 tactacctctgtccctaattataagacccttttggaa 230  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  7400129 tactacctccgtccctaattataagatccttttggaa 7400165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 41026136 - 41026100
Alignment:
Q  191 aagtactacctctgtccctaattataagacccttttg 227  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  41026136 aagtactccctccgtccctaattataagacccttttg 41026100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 42541896 - 42541864
Alignment:
Q  194 tactacctctgtccctaattataagaccctttt 226  Q
    ||||||||| |||||||||||||||||||||||    
T  42541896 tactacctccgtccctaattataagaccctttt 42541864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 43093449 - 43093413
Alignment:
Q  191 aagtactacctctgtccctaattataagacccttttg 227  Q
    |||||||||||| | ||||||||||||||||||||||    
T  43093449 aagtactacctccgcccctaattataagacccttttg 43093413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 12890253 - 12890212
Alignment:
Q  186 ttattaagtactacctctgtccctaattataagacccttttg 227  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  12890253 ttattaaatactacctccgtccctaattataagacccttttg 12890212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 18970766 - 18970733
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||||||||||||||||||||||||||||    
T  18970766 tactacctctgtccctaattataagacccttttg 18970733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 25523800 - 25523761
Alignment:
Q  191 aagtactacctctgtccctaattataagacccttttggaa 230  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  25523800 aagtactacctctgttcctaattataggacccttttggaa 25523761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 28566149 - 28566184
Alignment:
Q  192 agtactacctctgtccctaattataagacccttttg 227  Q
    ||||||||||| ||||||||||||||||||||||||    
T  28566149 agtactacctccgtccctaattataagacccttttg 28566184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 2060315 - 2060349
Alignment:
Q  193 gtactacctctgtccctaattataagacccttttg 227  Q
    |||||||||| ||||||||||||||||||||||||    
T  2060315 gtactacctccgtccctaattataagacccttttg 2060349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 2200277 - 2200244
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  2200277 tactacctccgtccctaattataagacccttttg 2200244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 3095299 - 3095332
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  3095299 tactacctccgtccctaattataagacccttttg 3095332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 7116336 - 7116303
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  7116336 tactacctccgtccctaattataagacccttttg 7116303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 8912911 - 8912878
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  8912911 tactacctccgtccctaattataagacccttttg 8912878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 11201980 - 11201947
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    |||| |||||||||||||||||||||||||||||    
T  11201980 tactccctctgtccctaattataagacccttttg 11201947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 18374741 - 18374708
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  18374741 tactacctccgtccctaattataagacccttttg 18374708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 21221022 - 21220989
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||||||||||| ||||||||||||||||    
T  21221022 tactacctctgtccctatttataagacccttttg 21220989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 24345715 - 24345682
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  24345715 tactacctccgtccctaattataagacccttttg 24345682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 26322330 - 26322297
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  26322330 tactacctccgtccctaattataagacccttttg 26322297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 31751069 - 31751102
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  31751069 tactacctccgtccctaattataagacccttttg 31751102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 41422512 - 41422545
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  41422512 tactacctccgtccctaattataagacccttttg 41422545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 41494659 - 41494626
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  41494659 tactacctccgtccctaattataagacccttttg 41494626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 2199978 - 2200010
Alignment:
Q  194 tactacctctgtccctaattataagaccctttt 226  Q
    ||||||||| |||||||||||||||||||||||    
T  2199978 tactacctccgtccctaattataagaccctttt 2200010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 7492144 - 7492108
Alignment:
Q  191 aagtactacctctgtccctaattataagacccttttg 227  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  7492144 aagtactccctccgtccctaattataagacccttttg 7492108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 11201676 - 11201716
Alignment:
Q  187 tattaagtactacctctgtccctaattataagacccttttg 227  Q
    |||||| |||| |||| ||||||||||||||||||||||||    
T  11201676 tattaaatactccctccgtccctaattataagacccttttg 11201716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 13215857 - 13215825
Alignment:
Q  194 tactacctctgtccctaattataagaccctttt 226  Q
    ||||||||| |||||||||||||||||||||||    
T  13215857 tactacctccgtccctaattataagaccctttt 13215825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 23083515 - 23083547
Alignment:
Q  194 tactacctctgtccctaattataagaccctttt 226  Q
    ||||||||| |||||||||||||||||||||||    
T  23083515 tactacctccgtccctaattataagaccctttt 23083547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 36750924 - 36750888
Alignment:
Q  191 aagtactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| || ||||||||||||||||||||||||    
T  36750924 aagtactacttccgtccctaattataagacccttttg 36750888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 6646 - 6610
Alignment:
Q  194 tactacctctgtccctaattataagacccttttggaa 230  Q
    ||||||||| |||||||||||||||||||||||||||    
T  6646 tactacctccgtccctaattataagacccttttggaa 6610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 18112012 - 18111976
Alignment:
Q  194 tactacctctgtccctaattataagacccttttggaa 230  Q
    ||||||||| |||||||||||||||||||||||||||    
T  18112012 tactacctccgtccctaattataagacccttttggaa 18111976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 44888673 - 44888713
Alignment:
Q  187 tattaagtactacctctgtccctaattataagacccttttg 227  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  44888673 tattaactactacctccgtccctaattataagacccttttg 44888713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 30512766 - 30512801
Alignment:
Q  192 agtactacctctgtccctaattataagacccttttg 227  Q
    |||||||||||||||||||| |||||||||||||||    
T  30512766 agtactacctctgtccctaactataagacccttttg 30512801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 45283829 - 45283794
Alignment:
Q  194 tactacctctgtccctaattataagacccttttgga 229  Q
    ||||||||| ||||||||||||||||||||||||||    
T  45283829 tactacctccgtccctaattataagacccttttgga 45283794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 227
Target Start/End: Complemental strand, 17069882 - 17069848
Alignment:
Q  193 gtactacctctgtccctaattataagacccttttg 227  Q
    |||||||||| ||||||||||||||||||||||||    
T  17069882 gtactacctccgtccctaattataagacccttttg 17069848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 17578391 - 17578425
Alignment:
Q  193 gtactacctctgtccctaattataagacccttttg 227  Q
    |||||||||| ||||||||||||||||||||||||    
T  17578391 gtactacctccgtccctaattataagacccttttg 17578425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 32475264 - 32475230
Alignment:
Q  194 tactacctctgtccctaattataagacccttttgg 228  Q
    |||| ||||||||||||||||||||||||||||||    
T  32475264 tactccctctgtccctaattataagacccttttgg 32475230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 2152277 - 2152244
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  2152277 tactacctccgtccctaattataagacccttttg 2152244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 5162304 - 5162337
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  5162304 tactacctccgtccctaattataagacccttttg 5162337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 6050592 - 6050559
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  6050592 tactacctccgtccctaattataagacccttttg 6050559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 11798605 - 11798638
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    |||| |||||||||||||||||||||||||||||    
T  11798605 tactccctctgtccctaattataagacccttttg 11798638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 12802611 - 12802644
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  12802611 tactacctccgtccctaattataagacccttttg 12802644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 18111716 - 18111749
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||||||||||||||||| ||||||||||    
T  18111716 tactacctctgtccctaattataggacccttttg 18111749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 18641417 - 18641384
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  18641417 tactacctccgtccctaattataagacccttttg 18641384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 23487064 - 23487097
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  23487064 tactacctccgtccctaattataagacccttttg 23487097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 23688202 - 23688169
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  23688202 tactacctccgtccctaattataagacccttttg 23688169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 38967141 - 38967174
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    |||||||||||||||||||||||||| |||||||    
T  38967141 tactacctctgtccctaattataagatccttttg 38967174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 45260223 - 45260256
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    |||||||||||| |||||||||||||||||||||    
T  45260223 tactacctctgttcctaattataagacccttttg 45260256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 12824943 - 12824979
Alignment:
Q  191 aagtactacctctgtccctaattataagacccttttg 227  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  12824943 aagtactacctctgtccctaattatgagacctttttg 12824979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 44580616 - 44580648
Alignment:
Q  194 tactacctctgtccctaattataagaccctttt 226  Q
    ||||||||| |||||||||||||||||||||||    
T  44580616 tactacctccgtccctaattataagaccctttt 44580648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 18795 - 18760
Alignment:
Q  192 agtactacctctgtccctaattataagacccttttg 227  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18795 agtactacctccgtccctaattataagacccttttg 18760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 18497 - 18530
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  18497 tactacctccgtccctaattataagacccttttg 18530  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 25124285 - 25124250
Alignment:
Q  192 agtactacctctgtccctaattataagacccttttg 227  Q
    ||||||||||| ||||||||||||||||||||||||    
T  25124285 agtactacctccgtccctaattataagacccttttg 25124250  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 31937074 - 31937109
Alignment:
Q  192 agtactacctctgtccctaattataagacccttttg 227  Q
    ||||||||||| ||||||||||||||||||||||||    
T  31937074 agtactacctccgtccctaattataagacccttttg 31937109  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 54878059 - 54878012
Alignment:
Q  187 tattaagtactacctctgtccctaattataagacccttttggaagaaa 234  Q
    |||||| ||||||||| |||||||||||||||||| ||||| ||||||    
T  54878059 tattaattactacctccgtccctaattataagaccgttttgaaagaaa 54878012  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 49373735 - 49373697
Alignment:
Q  189 ttaagtactacctctgtccctaattataagacccttttg 227  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  49373735 ttaattactacctccgtccctaattataagacccttttg 49373697  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 4415965 - 4415998
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  4415965 tactacctccgtccctaattataagacccttttg 4415998  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 6807429 - 6807462
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    |||| |||||||||||||||||||||||||||||    
T  6807429 tactccctctgtccctaattataagacccttttg 6807462  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 7698506 - 7698473
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  7698506 tactacctccgtccctaattataagacccttttg 7698473  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 18872717 - 18872750
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  18872717 tactacctccgtccctaattataagacccttttg 18872750  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 20455218 - 20455185
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  20455218 tactacctccgtccctaattataagacccttttg 20455185  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 24154187 - 24154220
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    |||||||||| |||||||||||||||||||||||    
T  24154187 tactacctctctccctaattataagacccttttg 24154220  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 28495380 - 28495413
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    |||||||||||||||||||||||||| |||||||    
T  28495380 tactacctctgtccctaattataagatccttttg 28495413  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 28501423 - 28501390
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  28501423 tactacctccgtccctaattataagacccttttg 28501390  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 29520201 - 29520168
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  29520201 tactacctccgtccctaattataagacccttttg 29520168  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 32899255 - 32899222
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  32899255 tactacctccgtccctaattataagacccttttg 32899222  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 39671023 - 39670990
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  39671023 tactacctccgtccctaattataagacccttttg 39670990  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 46949992 - 46950025
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  46949992 tactacctccgtccctaattataagacccttttg 46950025  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 49793091 - 49793124
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  49793091 tactacctccgtccctaattataagacccttttg 49793124  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 53564393 - 53564360
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  53564393 tactacctccgtccctaattataagacccttttg 53564360  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 55563164 - 55563131
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  55563164 tactacctccgtccctaattataagacccttttg 55563131  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 56432518 - 56432551
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  56432518 tactacctccgtccctaattataagacccttttg 56432551  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 626003 - 625967
Alignment:
Q  194 tactacctctgtccctaattataagacccttttggaa 230  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  626003 tactacctccgtccctaattataagacctttttggaa 625967  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 21265220 - 21265252
Alignment:
Q  194 tactacctctgtccctaattataagaccctttt 226  Q
    ||||||||| |||||||||||||||||||||||    
T  21265220 tactacctccgtccctaattataagaccctttt 21265252  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 30523764 - 30523796
Alignment:
Q  194 tactacctctgtccctaattataagaccctttt 226  Q
    ||||||||| |||||||||||||||||||||||    
T  30523764 tactacctccgtccctaattataagaccctttt 30523796  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 30783678 - 30783706
Alignment:
Q  197 tacctctgtccctaattataagacccttt 225  Q
    |||||||||||||||||||||||||||||    
T  30783678 tacctctgtccctaattataagacccttt 30783706  T

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Target: scaffold0674 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 5151 - 5184
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  5151 tactacctccgtccctaattataagacccttttg 5184  T

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Target: scaffold0549 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 10219 - 10186
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  10219 tactacctccgtccctaattataagacccttttg 10186  T

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Target: scaffold0250 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 9166 - 9199
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    |||||||||||||||||||||||| |||||||||    
T  9166 tactacctctgtccctaattataacacccttttg 9199  T

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Target: scaffold0163 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 1483 - 1450
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  1483 tactacctccgtccctaattataagacccttttg 1450  T

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Target: scaffold0161 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 3438 - 3471
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  3438 tactacctccgtccctaattataagacccttttg 3471  T

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Target: scaffold0107 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 48654 - 48687
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  48654 tactacctccgtccctaattataagacccttttg 48687  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 93785 - 93818
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    |||||| |||||||||||||||||||||||||||    
T  93785 tactacatctgtccctaattataagacccttttg 93818  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 164214 - 164247
Alignment:
Q  194 tactacctctgtccctaattataagacccttttg 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  164214 tactacctccgtccctaattataagacccttttg 164247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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