View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048R-Insertion-11 (Length: 263)
Name: NF3048R-Insertion-11
Description: NF3048R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048R-Insertion-11 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 32055484 - 32055234
Alignment:
| Q |
9 |
cttagttcctctgcttttcattaggatcccataaaaatttcaaagggaggttaagaaaaaccctttggaaaataatgaatgttattgtaatttgtttgga |
108 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
32055484 |
cttagttcctgtgcttttcattaggatcccataaaaatttcaaagggaggttaagaaaaactctttggaaaataatg----ttattgtaatttgtttgga |
32055389 |
T |
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| Q |
109 |
ttttcatgtaacatatataaggctgggacacttttaaatttgcatacacattgtgcgtcaagtggtcaagtattcattatcgtggattatctaatacaat |
208 |
Q |
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| T |
32055388 |
ttttcatgtaacatatataaggccgggacccttttaaatttgcatacacattgtgcgtcaagtggtcaagtattcattaacgtggattatctaatacaat |
32055289 |
T |
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| Q |
209 |
tttatcttgtattatcatgttttgtttgtatttactccaaaacgatcaatgtgtc |
263 |
Q |
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| T |
32055288 |
tttattttgtattattatgttttgtttgtatttatcccaaaacgatcaatgtgtc |
32055234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 20996452 - 20996249
Alignment:
| Q |
22 |
cttttcattaggatcccataaaaatttcaaagggaggttaagaaaaaccctttggaaaataatgaatgttattgtaatttgtttggattttcatgtaaca |
121 |
Q |
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| T |
20996452 |
cttttcattag-accccataaaaactggaaagggaggttaagaaaaacactttgtaagat----aacgttattgtaatttgtttgtatttttatgtaaca |
20996358 |
T |
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| Q |
122 |
tatataaggctgggacacttttaaatttgcatacacattgtgcgtcaagtggtcaagtattcattatcgtggattatctaatacaattttatcttgtatt |
221 |
Q |
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| T |
20996357 |
tatctaagactaggactcctttgaatttgaaga-acattg-----ca---ggaaatgtattcattaatgtggattatgcaatacaattttatattttatt |
20996267 |
T |
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| Q |
222 |
atcatgttttgtttgtat |
239 |
Q |
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| T |
20996266 |
atcatgttttgtttgtat |
20996249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 8086123 - 8085937
Alignment:
| Q |
22 |
cttttcattaggatcccataaaaatttcaaagggaggttaagaaaaaccctttggaaaataatgaatgttattgtaatttgtttggattttcatgtaaca |
121 |
Q |
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| T |
8086123 |
cttttcattagga-cccataaaaatttgaaagggaggataagaaatacattctggaaaat----gatgttattctaatttgtttggattttcatgtaaca |
8086029 |
T |
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| Q |
122 |
tatataaggctgggacacttttaaatttgcatacacattgtgcgtcaagtggtcaagtattcattatcgtggattatctaatacaattttatcttgtatt |
221 |
Q |
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| T |
8086028 |
tatgtaagactaggatccttttaaatttgcatatacattg-----ca---tgtaaattattcattaatgtggattatctaatataattttatcttgtatt |
8085937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 30333085 - 30333218
Alignment:
| Q |
23 |
ttttcattaggatcccataaaaatttcaaagggaggttaagaaaaaccctttggaaaataatgaatgttattgtaatttgtttggattttcatgtaacat |
122 |
Q |
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| T |
30333085 |
ttttcattaggaccccttaaaaatttaaaagggaagttaa-aaaaacactttagaaaacgatg----ttattgtaatttgtttggattttcatgtaacat |
30333179 |
T |
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| Q |
123 |
atataaggctgggacacttttaaatttgcatacacattg |
161 |
Q |
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| T |
30333180 |
atttaagactaggacccttataaattatcatacacattg |
30333218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 7580976 - 7580925
Alignment:
| Q |
193 |
gattatctaatacaattttatcttgtattatcatgttttgtttgtatttact |
244 |
Q |
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| T |
7580976 |
gattatctaatacgattttatcttatgttatcatgttttgtttgtatttact |
7580925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 26511347 - 26511427
Alignment:
| Q |
22 |
cttttcattaggatcccataaaaatttcaaagggaggttaagaaaaaccctttggaaaataatgaatgttattgtaatttgt |
103 |
Q |
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| T |
26511347 |
cttttcattaggacgccataaaaatttgaaagagaggttaagaaaaacactatggatgaaaatg-atgttattgtaatttgt |
26511427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 26511481 - 26511533
Alignment:
| Q |
190 |
gtggattatctaatacaattttatcttgtattatcatgttttgtttgtattta |
242 |
Q |
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| T |
26511481 |
gtggattatattattcaattttatcttgtattatcatgttttggttgtattta |
26511533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 19828221 - 19828276
Alignment:
| Q |
179 |
tattcattatcgtggattatctaatac---aattttatcttgtattatcatgtttt |
231 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19828221 |
tattcattaatgtggattatctaatactacaattttatcttgtattatcatgtttt |
19828276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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