View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048R-Insertion-13 (Length: 365)
Name: NF3048R-Insertion-13
Description: NF3048R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048R-Insertion-13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 180 - 365
Target Start/End: Original strand, 40586110 - 40586295
Alignment:
| Q |
180 |
gagttacacccaaatttaacacatatagatcannnnnnnnccctttcctattacaaattaaaactaaatttcttgtcaactaactcaagaataccaatgt |
279 |
Q |
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| T |
40586110 |
gagttacacccaaatttaacacatatagaacattttttttccctttcctattacaaattaaaactaaatttcttgtcaactaactcaagaataccaatgt |
40586209 |
T |
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| Q |
280 |
cagcattatcatgatcttcaatggctatattcagatccaaagagaggtttagattactttgatgatcctctatcatggtctctttc |
365 |
Q |
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| T |
40586210 |
cagcattatcatgatcttcaatggcgatatttagatccaaagagaggtttagattactttgatgatcctctatcatggtctctttc |
40586295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 40585931 - 40586082
Alignment:
| Q |
7 |
caagcttatcatataccatctccatccaagattgaaaaatacatgcatatcaacttgaattatcaaattatatatctaaaagtttgcattcatgtcttgn |
106 |
Q |
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| T |
40585931 |
caagcttatcatataccatctccatccaagattaaaaaatacatgcatatcaacttgaattatcaaactatatatctaaaagtttgcattcatgtctttt |
40586030 |
T |
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| Q |
107 |
nnnnnnnctttccccactaataactatagctgaaaaacaaacaagttgagag |
158 |
Q |
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| T |
40586031 |
tttttttctttccccactaataactatagctgaaaaacaaacaagttgagag |
40586082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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