View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3048R-Insertion-17 (Length: 753)

Name: NF3048R-Insertion-17
Description: NF3048R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3048R-Insertion-17
NF3048R-Insertion-17
[»] chr1 (12 HSPs)
chr1 (278-750)||(9828999-9829468)
chr1 (363-731)||(9755629-9755993)
chr1 (9-238)||(9828722-9828950)
chr1 (9-238)||(9755247-9755475)
chr1 (436-697)||(9813864-9814122)
chr1 (593-746)||(9708475-9708628)
chr1 (14-180)||(9803885-9804065)
chr1 (436-576)||(9804111-9804250)
chr1 (278-335)||(9755535-9755592)
chr1 (630-746)||(9755264-9755380)
chr1 (630-746)||(9828739-9828855)
chr1 (114-155)||(9708599-9708640)
[»] scaffold0432 (2 HSPs)
scaffold0432 (9-119)||(7210-7319)
scaffold0432 (119-153)||(7334-7368)


Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 278 - 750
Target Start/End: Original strand, 9828999 - 9829468
Alignment:
Q  278 acaacatttactaactcgtcagcacttctttcctgaacacgattccatataagtttacaaatcggtttnnnnnnnnnnnnnnnnntttcatactcactaa 377  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||                 |||||||||||||||    
T  9828999 acaacatttactaactcatcagcacttctttcctgaacacgattccttataagtttactaatcggtttatcatcatcatcat---tttcatactcactaa 9829095  T
Q  378 taaagacattatgagtccgtttccttttcggtattacagcacataagagatcttcaacaaaatcagaatcttccttattgctttgatcataattggagta 477  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  9829096 taaagacattacgagtccgtttccttttcggaattacagcacataagagatcttcaacaaaatcagaatcttcctcgttgctttgatcataattggagta 9829195  T
Q  478 caaattctttcccttttctgctgcagaacacgttgacagagaattacattgactaccttgcatatcaaatacatcttgaaaattagaattcttgttactc 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9829196 caaattctttcccttttctgctgcagaacacgttgacagagaattacattgactaccttgcatatcagatacatcttgaaaattagaattcttgttactc 9829295  T
Q  578 gtattagattccgcgtcactattagacccatctagtgaattattagacatgtcttcacaatcagatgcatcaaaatcatcaccaataaaatcaatattgt 677  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9829296 gtattagattccgcgtcactattagacccatctagtgaattattagacatgtcttcacaatcagatgcatcaaaatcatcaccaataaaatcaatattgt 9829395  T
Q  678 ttccttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgttggaatactttgctgatgctt 750  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9829396 ttccttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgttggaatactttgcagatgctt 9829468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 363 - 731
Target Start/End: Original strand, 9755629 - 9755993
Alignment:
Q  363 tttcatactcactaataaagacattatgagtccgtttccttttcggtattacagcacataagagatcttcaacaaaatcagaatcttccttattgctttg 462  Q
    ||||| ||||||| |||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  9755629 tttcagactcacttataaagacattacgagtccgtttcctttttggaattacagcacataagagatcttcaacaaaatcagaatcttcctcactgctttg 9755728  T
Q  463 atcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactaccttgcatatcaaatacatcttgaaaatta 562  Q
    |||||||||||||||||||||||||||||||| || ||||||||| |||||| ||||| || ||| ||| |||||||||||| | ||||||||||||| |    
T  9755729 atcataattggagtacaaattctttcccttttttgttgcagaacatgttgactgagaaatatattcactgccttgcatatcagacacatcttgaaaataa 9755828  T
Q  563 gaattcttgttactcgtattagattccgcgtcactattagacccatctagtgaattattagacatgtcttcacaatcagatgcatcaaaatcatcaccaa 662  Q
    || ||||||||||| |||    |||| ||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||    
T  9755829 gagttcttgttactagta----attctgcgtcactattagactcatcttgtgaagtattagacatgccttcacaatcagatgcatcaaaatcatcaacaa 9755924  T
Q  663 taaaatcaatattgtttccttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgttg 731  Q
    |||||||| |  ||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||    
T  9755925 taaaatcattcatgtttccttcctcactgtatgtcaaatcctcttctagttcatcatcatcgtttgttg 9755993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 9828722 - 9828950
Alignment:
Q  9 tgacttgctagaggtgacttcacaactagatacatcaaaatcatcaacaataaaacctttcgagtttctttcctcactttgttgataagtcctctattga 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  9828722 tgacttgctagaggtgacttcacaactagatacatcaaaatcatcaacaataaaacctttcgagtttccttcctcactttgt-gataagtcctctattga 9828820  T
Q  109 ttcagcatcatcatttgttggaatactttgctgatagttgaccttatcatcatgacttttggttacacattttcttagaggccttcgacggcggcgccta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9828821 ttcagcatcatcatttgttggaatactttgctgatagttgaccttatcatcatgacttttggttacacattttcttagaggccttcgacggcggcgccta 9828920  T
Q  209 ctctcttccttcctccttacaagttgacta 238  Q
    ||||||||||||||||||||||||||||||    
T  9828921 ctctcttccttcctccttacaagttgacta 9828950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 9755247 - 9755475
Alignment:
Q  9 tgacttgctagaggtgacttcacaactagatacatcaaaatcatcaacaataaaacctttcgagtttctttcctcactttgttgataagtcctctattga 108  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||    
T  9755247 tgacttgctagaggtgacttcacaaccagataaatcaaaatcatcaacaataaaacctttcaagtttccttcctcactttgt-gataagtcctctattga 9755345  T
Q  109 ttcagcatcatcatttgttggaatactttgctgatagttgaccttatcatcatgacttttggttacacattttcttagaggccttcgacggcggcgccta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9755346 ttcagcatcatcatttgttggaatactttgctgatagttgaccttatcatcatgacttttggttacacattttcttagaggccttcgacggcggcgccta 9755445  T
Q  209 ctctcttccttcctccttacaagttgacta 238  Q
    ||||||||||||||||||||||||||||||    
T  9755446 ctctcttccttcctccttacaagttgacta 9755475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 436 - 697
Target Start/End: Original strand, 9813864 - 9814122
Alignment:
Q  436 aaaatcagaatcttccttattgctttgatcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactacct 535  Q
    ||||||||| | ||| | |||| ||||||| ||||||||||| |||||||||||||||||||||||||||   |||||||||||| ||| |  |||||||    
T  9813864 aaaatcagatttttcgtcattgatttgatcctaattggagtaaaaattctttcccttttctgctgcagaatttgttgacagagaaatacttccactacct 9813963  T
Q  536 tgcatatcaaatacatcttgaaaattagaattcttgttactcgtattagattccgcgtcactattagacccatctagtgaattattagacatgtcttcac 635  Q
    ||||||||| |||||||||| |||| ||||| |||| ||| || | ||||||| ||||||||  ||||| ||||| ||||||||||||||||| ||||||    
T  9813964 tgcatatcagatacatcttgcaaataagaatccttgctacacgaactagattctgcgtcactgctagactcatctcgtgaattattagacatgccttcac 9814063  T
Q  636 aatcagatgcatcaaaatcatcaccaataaaatcaatattgtttccttcctcactgtatgtc 697  Q
    |||||||||||||||||| ||   ||||||||||| |||||||| |||||||| ||| ||||    
T  9814064 aatcagatgcatcaaaataat---caataaaatcactattgttttcttcctcattgtgtgtc 9814122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 593 - 746
Target Start/End: Original strand, 9708475 - 9708628
Alignment:
Q  593 tcactattagacccatctagtgaattattagacatgtcttcacaatcagatgcatcaaaatcatcaccaataaaatcaatattgtttccttcctcactgt 692  Q
    |||||||||||| | ||  |||| |||| ||| ||||||||||||||||||||||||| ||||||| ||||||||||| ||  |||  |||||||||| |    
T  9708475 tcactattagactcttcctgtgacttatcagatatgtcttcacaatcagatgcatcaacatcatcaacaataaaatcactaaggttatcttcctcactat 9708574  T
Q  693 atgtcgaatcctcttctaattcatcatcatcatttgttggaatactttgctgat 746  Q
    ||| | ||||| || |||  ||||||||||||||| |||||||||| |||||||    
T  9708575 atgacaaatccactcctaggtcatcatcatcattttttggaatactctgctgat 9708628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 9803885 - 9804065
Alignment:
Q  14 tgctagaggtgacttcacaactagatacatcaaaatcatcaacaataaaacctttcgagtttctttcctcactttgttgataagtcctctattgattcag 113  Q
    ||||||||||||||| |||||||||||||||||||||||| || |||||| || |  |||||| ||| || |||||| |||||||||||||||||| ||     
T  9803885 tgctagaggtgacttgacaactagatacatcaaaatcatcgacgataaaatctataaagtttccttcttcgctttgt-gataagtcctctattgatccat 9803983  T
Q  114 catcat---------------catttgttggaatactttgctgatagttgaccttatcatcatgacttttggttacacattt 180  Q
     |||||               |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  9803984 aatcattatcatgagcctcttcatttgttggaatactttgctgatagttgaccttatcaccatgaattttgcttacacattt 9804065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 436 - 576
Target Start/End: Original strand, 9804111 - 9804250
Alignment:
Q  436 aaaatcagaatcttccttattgctttgatcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactacct 535  Q
    ||||||||||  ||||| |||| ||||||||||||||||||| || ||||| | |||||||||||||||||  |||| ||||||| ||| |  |||||||    
T  9804111 aaaatcagaaatttcctcattgttttgatcataattggagtaaaagttctt-cgcttttctgctgcagaacttgttggcagagaaatacctccactacct 9804209  T
Q  536 tgcatatcaaatacatcttgaaaattagaattcttgttact 576  Q
    ||||| ||| ||||||| || |||| ||||| |||| ||||    
T  9804210 tgcatttcagatacatcctgcaaataagaatccttgctact 9804250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 9755535 - 9755592
Alignment:
Q  278 acaacatttactaactcgtcagcacttctttcctgaacacgattccatataagtttac 335  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||| || ||||||||    
T  9755535 acaacatttaccaactcgtcagcacttctttcctgaacatgattccttacaagtttac 9755592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 630 - 746
Target Start/End: Original strand, 9755264 - 9755380
Alignment:
Q  630 cttcacaatcagatgcatcaaaatcatcaccaataaaatcaatattgtttccttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgt 729  Q
    |||||||| |||||  ||||||||||||| |||||||| |  |   ||||||||||||||| | ||   | ||||||  | ||||| |||||||||||||    
T  9755264 cttcacaaccagataaatcaaaatcatcaacaataaaacctttcaagtttccttcctcactttgtgataagtcctctattgattcagcatcatcatttgt 9755363  T
Q  730 tggaatactttgctgat 746  Q
    |||||||||||||||||    
T  9755364 tggaatactttgctgat 9755380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 630 - 746
Target Start/End: Original strand, 9828739 - 9828855
Alignment:
Q  630 cttcacaatcagatgcatcaaaatcatcaccaataaaatcaatattgtttccttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgt 729  Q
    ||||||||  |||| |||||||||||||| |||||||| |  |   ||||||||||||||| | ||   | ||||||  | ||||| |||||||||||||    
T  9828739 cttcacaactagatacatcaaaatcatcaacaataaaacctttcgagtttccttcctcactttgtgataagtcctctattgattcagcatcatcatttgt 9828838  T
Q  730 tggaatactttgctgat 746  Q
    |||||||||||||||||    
T  9828839 tggaatactttgctgat 9828855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 9708599 - 9708640
Alignment:
Q  114 catcatcatttgttggaatactttgctgatagttgaccttat 155  Q
    ||||||||||| |||||||||| |||||||| ||||||||||    
T  9708599 catcatcattttttggaatactctgctgatacttgaccttat 9708640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 7210 - 7319
Alignment:
Q  9 tgacttgctagaggtgacttcacaactagatacatcaaaatcatcaacaataaaacctttcgagtttctttcctcactttgttgataagtcctctattga 108  Q
    |||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||| |||||| ||| |||||||| ||||||||||||||||||    
T  7210 tgacttgctagaggcgacttcacagctagatatatcaaaatcatcaacaataaaacctttcaagtttccttcttcactttg-tgataagtcctctattga 7308  T
Q  109 ttcagcatcat 119  Q
    | |||||||||    
T  7309 tccagcatcat 7319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 7334 - 7368
Alignment:
Q  119 tcatttgttggaatactttgctgatagttgacctt 153  Q
    |||||||||||||||||||| ||||||||||||||    
T  7334 tcatttgttggaatactttgatgatagttgacctt 7368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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