View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3048R-Insertion-18 (Length: 821)

Name: NF3048R-Insertion-18
Description: NF3048R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3048R-Insertion-18
NF3048R-Insertion-18
[»] chr8 (4 HSPs)
chr8 (7-817)||(26494510-26495320)
chr8 (371-575)||(26506901-26507105)
chr8 (10-277)||(26506558-26506825)
chr8 (390-487)||(41127308-41127405)
[»] chr5 (2 HSPs)
chr5 (390-505)||(15176287-15176402)
chr5 (111-178)||(15176593-15176660)
[»] chr2 (14 HSPs)
chr2 (222-335)||(2327134-2327247)
chr2 (390-506)||(2330996-2331112)
chr2 (393-506)||(2303729-2303842)
chr2 (390-506)||(2327281-2327397)
chr2 (213-277)||(2330840-2330904)
chr2 (231-335)||(2351164-2351268)
chr2 (390-506)||(2310444-2310560)
chr2 (390-489)||(2321428-2321527)
chr2 (213-335)||(2303570-2303692)
chr2 (390-506)||(2294113-2294229)
chr2 (213-265)||(2321272-2321324)
chr2 (104-178)||(2293848-2293922)
chr2 (526-575)||(2294246-2294295)
chr2 (526-575)||(2310577-2310626)
[»] chr4 (1 HSPs)
chr4 (390-436)||(55017087-55017133)


Alignment Details
Target: chr8 (Bit Score: 755; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 755; E-Value: 0
Query Start/End: Original strand, 7 - 817
Target Start/End: Original strand, 26494510 - 26495320
Alignment:
Q  7 cactagagtgggttatggcgaatttggtgaaagacaaacacgtgcaacagatgctagtggaggaaattgaagaggtggttggtgaaagagaagaaaggga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26494510 cactagagtgggttatggcgaatttggtgaaagacaaacacgtgcaacagatgctagtggaggaaattgaagaggtggttggtgaaagagaggaaaggga 26494609  T
Q  107 agtgagagaggaagatttgtagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcctccaactcactacacaattccacgtgta 206  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26494610 agtgagagaggaagatttggagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcctcctactcactacacaattccacgtgta 26494709  T
Q  207 gtgacggaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattaaatccaacggtttgggagg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26494710 gtgacggaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattagatccaacggtttgggagg 26494809  T
Q  307 atcctacggtgtttaagccagagaggtttctaaaagatgcaaaaaatagaaacgaatttgacgcatttgatgttaggggtataaaagagataaagatgat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494810 atcctacggtgtttaagccagagaggtttctaaaagatgcaaaaaatagaaacgaatttgacgcatttgatgttaggggtataaaagagataaagatgat 26494909  T
Q  407 gccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaag 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494910 gccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaag 26495009  T
Q  507 acttcattaccaggaagtaatgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatccactagaaaatcaaatttctctcaggaactaga 606  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  26495010 acttcattaccaggaagtaatgttgatttgacagaaaaacaggaatttacaatggtgatgaaatatccactagaagctcaaatttctctcaggaattaga 26495109  T
Q  607 ttcaacaattggagacattttataggacatgatcatgattgtgcaccattgcaaagtaaaacaaaaagtatatcaaccataaaacaatggtgcaaacaca 706  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26495110 ttcaacaattggagacattttataggacatgatcaggattgtgcaccattgcaaagtaaaacaaaaagtatatcaaccataaaacaatggtgcaaacaca 26495209  T
Q  707 tttagatataaatgatacattgatgccatagagcaatgatacaaatatagcaatgtaaggttagtttacaacatcaatcaactatggtgtaaatatatgt 806  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  26495210 tttagatataaatgacacattgatgccatagagcaatgatacaaatatagcaatgtatggttagtttacaacatcaatcaaccatggtgtaaatatatgt 26495309  T
Q  807 gtatatctgtg 817  Q
    || | ||||||    
T  26495310 gtgtgtctgtg 26495320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 371 - 575
Target Start/End: Original strand, 26506901 - 26507105
Alignment:
Q  371 atttgatgttaggggtataaaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatac 470  Q
    |||||||||||  |||  ||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |||    
T  26506901 atttgatgttacaggtcaaaatgagataaagatgatgccatttggagcaggaaggaggatttgtcctgcctataacttggcaatgctccatgtagagtac 26507000  T
Q  471 tttgttgctaatttggttttgaactttgagtggaagacttcattaccaggaagtaatgttgatttgacagaaaaacaagaatttacaatggtgatgaaat 570  Q
    |||||  | ||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||||||||||    
T  26507001 tttgtgacaaatttagtttggaactttgaatggaagacttcattaccagaaagtaatgttgatttgtcagaaaaacaggaatttactatggtgatgaaat 26507100  T
Q  571 atcca 575  Q
    |||||    
T  26507101 atcca 26507105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 26506558 - 26506825
Alignment:
Q  10 tagagtgggttatggcgaatttggtgaaagacaaacacgtgcaacagatgctagtggaggaaattgaagaggtggttggtgaaagagaagaaagggaagt 109  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||||| |   |||| |||||||||| ||  ||  ||||||| ||||| ||||| |||||    
T  26506558 tagagtgggttatggcgaatttggtcaaatacaaacatgtgcaacaaagaatagtcgaggaaattggagttgtaattggtgatagagaggaaagagaagt 26506657  T
Q  110 gagagaggaagatttgtagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcctccaactcactacacaattccacgtgtagtg 209  Q
     | ||||||||||||| | || || || ||| | ||||| |||||||| |||||||||||||| || |||||  ||||||||  |||||||| || ||||    
T  26506658 aaaagaggaagatttggaaaagttaccttatcttaaggcagtgattttagaagggttaaggcgccaccctccttctcactacttaattccacatgcagtg 26506757  T
Q  210 acggaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcaga 277  Q
    || |||||| |  |||| || |||||||||||||||||||||||||| || |||||||||||||||||    
T  26506758 accgaggatgtgatttttaacggttacttggtgcctaaaaatgggacagttaattttatggtggcaga 26506825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 390 - 487
Target Start/End: Original strand, 41127308 - 41127405
Alignment:
Q  390 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggt 487  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||||  ||||| || ||  |||||||||| ||||||||||| |||||||||||    
T  41127308 aaagagataaagatgatgccgtttggagttgggaggagaatttgtcctggatataatttagctttgctccatttggaatactttgtggctaatttggt 41127405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 390 - 505
Target Start/End: Complemental strand, 15176402 - 15176287
Alignment:
Q  390 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 489  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||| ||||   || ||| || | || || |||||||||||||| ||||| ||||    
T  15176402 aaagagataaagatgatgccatttggagcagggaggagaatgtgtcctggctatggtttagcattgttgcacttggaatactttgttgccaattttgttt 15176303  T
Q  490 tgaactttgagtggaa 505  Q
    |||| |||||||||||    
T  15176302 tgaattttgagtggaa 15176287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 15176660 - 15176593
Alignment:
Q  111 agagaggaagatttgtagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcc 178  Q
    ||||| ||||||||| | ||| |||||||| | || ||||| |||||||||||| |||||||||||||    
T  15176660 agagaagaagatttgaaaaaaatgccatatcttaaagctgtaattttggaagggctaaggcgtcatcc 15176593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 222 - 335
Target Start/End: Original strand, 2327134 - 2327247
Alignment:
Q  222 gttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattaaatccaacggtttgggaggatcctacggtgttta 321  Q
    |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| || || ||  ||||    |||||||||||||| | || |||||    
T  2327134 gttttgaatggttatttggtgcctaaaaatgggacggtgaatttcatggtggcagagatggggttggatcctcgtgtttgggaggatccaatggagttta 2327233  T
Q  322 agccagagaggttt 335  Q
    ||||||| ||||||    
T  2327234 agccagaaaggttt 2327247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 390 - 506
Target Start/End: Original strand, 2330996 - 2331112
Alignment:
Q  390 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 489  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||||||  ||||| || ||  |||| ||||| ||||| ||||| |||||||||||||    
T  2330996 aaagagataaagatgatgccatttggagctgggaggagaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggttt 2331095  T
Q  490 tgaactttgagtggaag 506  Q
     ||| || || ||||||    
T  2331096 ggaatttcgattggaag 2331112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 393 - 506
Target Start/End: Original strand, 2303729 - 2303842
Alignment:
Q  393 gagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttga 492  Q
    |||||||||||||||||||||| ||| |  ||||| |||||||||||   ||| || ||  |||||||||||||||| ||||| ||||||||||||| ||    
T  2303729 gagataaagatgatgccgtttgaagctgaaaggagaatttgtcctgcacttaatttagctttgctccatttagaatattttgtggctaatttggtttgga 2303828  T
Q  493 actttgagtggaag 506  Q
    | || || ||||||    
T  2303829 atttcgattggaag 2303842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 390 - 506
Target Start/End: Original strand, 2327281 - 2327397
Alignment:
Q  390 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 489  Q
    |||||||| |||||||||||||||||||| || ||||| |||||||| |  ||||| || ||  | |||||||| ||||| ||||| |||||||||||||    
T  2327281 aaagagatcaagatgatgccgtttggagctggtaggagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggttt 2327380  T
Q  490 tgaactttgagtggaag 506  Q
     ||| || || ||||||    
T  2327381 ggaatttcgattggaag 2327397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 2330840 - 2330904
Alignment:
Q  213 gaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcaga 277  Q
    |||||| | |||||||||||||| |||||||||||| ||||||| |||||||||||||| |||||    
T  2330840 gaggatgtggttttgaatggttatttggtgcctaaagatgggacggtgaattttatggttgcaga 2330904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 231 - 335
Target Start/End: Original strand, 2351164 - 2351268
Alignment:
Q  231 ggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattaaatccaacggtttgggaggatcctacggtgtttaagccagaga 330  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||| || || |   ||||    |||||||||||||| | || ||||||||||||||    
T  2351164 ggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgtgtttgggaggatccaatggagtttaagccagaga 2351263  T
Q  331 ggttt 335  Q
    |||||    
T  2351264 ggttt 2351268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 390 - 506
Target Start/End: Original strand, 2310444 - 2310560
Alignment:
Q  390 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 489  Q
    ||||||||||||||||||||||||||||| || || || |||||||| |    ||| || ||  |||||||||| ||||| ||||| |||||||||||||    
T  2310444 aaagagataaagatgatgccgtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggttt 2310543  T
Q  490 tgaactttgagtggaag 506  Q
     ||| || || ||||||    
T  2310544 ggaatttcgattggaag 2310560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 390 - 489
Target Start/End: Original strand, 2321428 - 2321527
Alignment:
Q  390 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 489  Q
    ||||||||||||||||||||||||||||| || ||||| |||||||| |    ||| || ||  |||||||||| ||||| ||||| ||||| |||||||    
T  2321428 aaagagataaagatgatgccgtttggagctggaaggagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggttt 2321527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 335
Target Start/End: Original strand, 2303570 - 2303692
Alignment:
Q  213 gaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattaaatccaacggtttgggaggatccta 312  Q
    |||||| | |||||||| ||||| |||||||||||||||||||| |||||||| ||| |||| || || || |   ||||    |||||||||||||| |    
T  2303570 gaggatgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctggcggagatggggtgggatcctcgtgtttgggaggatccaa 2303669  T
Q  313 cggtgtttaagccagagaggttt 335  Q
     || |||||||||||| ||||||    
T  2303670 tggagtttaagccagaaaggttt 2303692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 390 - 506
Target Start/End: Original strand, 2294113 - 2294229
Alignment:
Q  390 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 489  Q
    ||||||||||||||||||||||||||||| || || || |||||||| |    ||| || ||  |||||||||| ||||| ||||| ||||| |||||||    
T  2294113 aaagagataaagatgatgccgtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggttt 2294212  T
Q  490 tgaactttgagtggaag 506  Q
     ||| || || ||||||    
T  2294213 ggaatttcgattggaag 2294229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 2321272 - 2321324
Alignment:
Q  213 gaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattt 265  Q
    |||||| | |||||||| ||||| |||||||||||||||||||| ||||||||    
T  2321272 gaggatgtggttttgaacggttatttggtgcctaaaaatgggacggtgaattt 2321324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 2293848 - 2293922
Alignment:
Q  104 ggaagtgagagaggaagatttgtagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcc 178  Q
    |||||||| ||||||||| ||| ||||| | |  |||||||||  |||| ||||||||||||| |||||||||||    
T  2293848 ggaagtgaaagaggaagacttgcagaaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatcc 2293922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 2294246 - 2294295
Alignment:
Q  526 atgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatcca 575  Q
    ||||||||||||| |||| ||||||||| || |||||||||||| |||||    
T  2294246 atgttgatttgacggaaatacaagaattcaccatggtgatgaaaaatcca 2294295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 2310577 - 2310626
Alignment:
Q  526 atgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatcca 575  Q
    ||||||||||||| |||| ||||||||| || |||||||||||| |||||    
T  2310577 atgttgatttgacggaaatacaagaattcactatggtgatgaaaaatcca 2310626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 390 - 436
Target Start/End: Original strand, 55017087 - 55017133
Alignment:
Q  390 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcc 436  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||    
T  55017087 aaagagatgaagatgatgccgtttggtgctgggaggaggatttgtcc 55017133  T

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