View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3048R-Insertion-19 (Length: 920)

Name: NF3048R-Insertion-19
Description: NF3048R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3048R-Insertion-19
NF3048R-Insertion-19
[»] chr6 (24 HSPs)
chr6 (439-836)||(26652186-26652575)
chr6 (439-836)||(26758154-26758543)
chr6 (510-638)||(27420814-27420943)
chr6 (9-94)||(26652576-26652661)
chr6 (9-94)||(26758544-26758629)
chr6 (722-806)||(31289892-31289975)
chr6 (203-284)||(28918168-28918251)
chr6 (300-410)||(27420571-27420681)
chr6 (9-190)||(27605649-27605829)
chr6 (9-108)||(26654493-26654595)
chr6 (9-108)||(26760463-26760565)
chr6 (720-778)||(27421105-27421163)
chr6 (9-184)||(27334565-27334735)
chr6 (9-184)||(27395305-27395475)
chr6 (230-289)||(26901746-26901805)
chr6 (203-284)||(1368480-1368563)
chr6 (215-284)||(13487292-13487361)
chr6 (235-284)||(15832503-15832552)
chr6 (720-769)||(26632793-26632842)
chr6 (720-769)||(26738769-26738818)
chr6 (11-58)||(31282880-31282928)
chr6 (203-284)||(34244967-34245050)
chr6 (203-282)||(776155-776236)
chr6 (217-295)||(29395495-29395573)
[»] scaffold0003 (3 HSPs)
scaffold0003 (510-638)||(66420-66549)
scaffold0003 (300-410)||(66682-66792)
scaffold0003 (720-778)||(66200-66258)
[»] chr4 (13 HSPs)
chr4 (203-294)||(42776640-42776733)
chr4 (203-284)||(41139478-41139559)
chr4 (216-284)||(1539659-1539727)
chr4 (203-284)||(10633035-10633118)
chr4 (203-284)||(31473852-31473935)
chr4 (203-272)||(36456011-36456082)
chr4 (203-280)||(55266852-55266931)
chr4 (249-284)||(17727116-17727151)
chr4 (249-284)||(40338239-40338274)
chr4 (203-289)||(52493929-52494015)
chr4 (203-262)||(5715747-5715808)
chr4 (240-282)||(27284651-27284693)
chr4 (203-282)||(36455910-36455991)
[»] chr8 (18 HSPs)
chr8 (203-284)||(36103104-36103187)
chr8 (210-284)||(35404739-35404813)
chr8 (203-281)||(14242-14321)
chr8 (215-284)||(8049271-8049340)
chr8 (203-284)||(515529-515612)
chr8 (203-284)||(29257348-29257431)
chr8 (203-284)||(44889357-44889440)
chr8 (204-284)||(44346675-44346757)
chr8 (203-282)||(3853619-3853700)
chr8 (203-282)||(3858077-3858158)
chr8 (203-281)||(33986007-33986087)
chr8 (203-284)||(23011737-23011820)
chr8 (240-284)||(29611412-29611456)
chr8 (203-284)||(33377294-33377377)
chr8 (203-284)||(35979001-35979084)
chr8 (203-283)||(24044963-24045045)
chr8 (203-294)||(28324649-28324742)
chr8 (218-283)||(15186815-15186880)
[»] chr2 (16 HSPs)
chr2 (203-284)||(13017782-13017865)
chr2 (203-284)||(769039-769122)
chr2 (203-284)||(1583796-1583879)
chr2 (203-284)||(2274775-2274858)
chr2 (203-284)||(11141308-11141391)
chr2 (203-284)||(33189244-33189327)
chr2 (215-294)||(30698298-30698377)
chr2 (235-289)||(31613849-31613903)
chr2 (203-284)||(10480122-10480205)
chr2 (203-284)||(11532240-11532323)
chr2 (203-284)||(11793898-11793981)
chr2 (203-284)||(35047666-35047749)
chr2 (249-283)||(7167655-7167689)
chr2 (203-294)||(7227989-7228082)
chr2 (203-282)||(27033493-27033574)
chr2 (215-284)||(11606730-11606799)
[»] chr1 (14 HSPs)
chr1 (202-295)||(51847854-51847948)
chr1 (214-284)||(946929-946999)
chr1 (203-284)||(24273207-24273290)
chr1 (203-284)||(26501066-26501149)
chr1 (203-284)||(47165199-47165282)
chr1 (203-289)||(8224771-8224859)
chr1 (240-284)||(47820255-47820299)
chr1 (203-282)||(6470675-6470756)
chr1 (203-282)||(15034662-15034743)
chr1 (203-282)||(43622967-43623048)
chr1 (249-294)||(34003512-34003557)
chr1 (202-280)||(37036940-37037020)
chr1 (215-284)||(37448388-37448457)
chr1 (217-294)||(44570697-44570774)
[»] chr7 (20 HSPs)
chr7 (203-294)||(25189189-25189282)
chr7 (203-284)||(23548584-23548667)
chr7 (203-284)||(26162110-26162193)
chr7 (203-284)||(39342615-39342698)
chr7 (203-282)||(31632725-31632806)
chr7 (240-281)||(19865530-19865571)
chr7 (203-284)||(6498738-6498821)
chr7 (203-284)||(14603235-14603318)
chr7 (203-284)||(18789219-18789302)
chr7 (203-284)||(28539141-28539224)
chr7 (203-284)||(35455807-35455890)
chr7 (203-284)||(35776928-35777011)
chr7 (215-282)||(5976549-5976616)
chr7 (204-284)||(23455220-23455302)
chr7 (204-284)||(30629061-30629143)
chr7 (203-282)||(29065822-29065903)
chr7 (240-294)||(30080764-30080818)
chr7 (215-284)||(29639188-29639257)
chr7 (204-294)||(34115610-34115702)
chr7 (203-281)||(40110740-40110820)
[»] chr5 (19 HSPs)
chr5 (203-284)||(19533891-19533974)
chr5 (203-284)||(25935274-25935357)
chr5 (206-284)||(8674460-8674538)
chr5 (203-284)||(14834827-14834910)
chr5 (203-284)||(22766955-22767038)
chr5 (203-294)||(35379347-35379439)
chr5 (203-284)||(37722878-37722961)
chr5 (203-284)||(40090398-40090481)
chr5 (203-284)||(41762199-41762282)
chr5 (203-283)||(22303855-22303937)
chr5 (240-281)||(12479949-12479990)
chr5 (215-284)||(37145485-37145554)
chr5 (203-284)||(927305-927388)
chr5 (203-284)||(20320632-20320715)
chr5 (203-284)||(37090284-37090367)
chr5 (204-284)||(9894306-9894388)
chr5 (230-284)||(8255059-8255112)
chr5 (203-282)||(20523208-20523289)
chr5 (203-284)||(32250082-32250164)
[»] chr3 (13 HSPs)
chr3 (212-284)||(50168596-50168668)
chr3 (203-284)||(53129829-53129912)
chr3 (249-284)||(9007441-9007476)
chr3 (204-284)||(21307518-21307600)
chr3 (203-267)||(46635860-46635926)
chr3 (203-294)||(47767435-47767528)
chr3 (216-284)||(19475834-19475902)
chr3 (203-284)||(53470415-53470498)
chr3 (203-283)||(37054397-37054479)
chr3 (203-283)||(42005940-42006022)
chr3 (203-294)||(7302349-7302442)
chr3 (216-294)||(30766571-30766649)
chr3 (203-282)||(44436261-44436342)
[»] scaffold0400 (1 HSPs)
scaffold0400 (203-284)||(4485-4568)
[»] scaffold0365 (1 HSPs)
scaffold0365 (203-284)||(5129-5212)
[»] scaffold0129 (1 HSPs)
scaffold0129 (203-277)||(19779-19854)
[»] scaffold0301 (1 HSPs)
scaffold0301 (203-284)||(7154-7237)
[»] scaffold0169 (1 HSPs)
scaffold0169 (216-284)||(4093-4161)


Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-173; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 439 - 836
Target Start/End: Complemental strand, 26652575 - 26652186
Alignment:
Q  439 gaaaccaaaacatgatgaacgctcaacttgacattaaattataggaataataacgggaacaaattctgacgaaagaaaatttactggttgaaaatgctgc 538  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||    
T  26652575 gaaaccaaaacatgatgaacgcacaacttgacattaaattataggaataatatcgggaacaaattgtgacgaaagaaaatttactggttgaaa-tgctgc 26652477  T
Q  539 aaggacaaacaatacattgtgtttgtgcccaaacgatactctgtgaccaccaaaagaacagtattcatccatttcctactcttatttcctatttgcaatg 638  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26652476 aaggacaaacaatacattttgtttgtgcccaaacgatactctgtgaccaccaaaagaacagtattcatccatttcctactcttatttcctatttgcaatg 26652377  T
Q  639 gtctccaatctccatagctgacaaagagtgccatgaatgtcactcatacaacatgagagacaacaatacattttgtttgtgccagggatattgaagctga 738  Q
    |||       ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26652376 gtc-------tccatagctgacaaagagtgccatggatgtcactcatacaacacgagagacaacaatacattttgtttgtgccagggatattgaagctga 26652284  T
Q  739 aggtcgggtgatgtgatgtttctgccactgcgtcattgagtgggaactgcaaacatttgaccgagatcaaaagtttgagggatcacatc-aggaatgtc 836  Q
    ||||||||||||||||||||||||||| ||||||||||||  |||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  26652283 aggtcgggtgatgtgatgtttctgccaatgcgtcattgag-cggaactgcgaacatttgactgagatcaaaagtttgagggatcacatcaaggaatgtc 26652186  T

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Target: chr6; HSP #2
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 439 - 836
Target Start/End: Complemental strand, 26758543 - 26758154
Alignment:
Q  439 gaaaccaaaacatgatgaacgctcaacttgacattaaattataggaataataacgggaacaaattctgacgaaagaaaatttactggttgaaaatgctgc 538  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||    
T  26758543 gaaaccaaaacatgatgaacgcacaacttgacattaaattataggaataatatcgggaacaaattgtgacgaaagaaaatttactggttgaaa-tgctgc 26758445  T
Q  539 aaggacaaacaatacattgtgtttgtgcccaaacgatactctgtgaccaccaaaagaacagtattcatccatttcctactcttatttcctatttgcaatg 638  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26758444 aaggacaaacaatacattttgtttgtgcccaaacgatactctgtgaccaccaaaagaacagtattcatccatttcctactcttatttcctatttgcaatg 26758345  T
Q  639 gtctccaatctccatagctgacaaagagtgccatgaatgtcactcatacaacatgagagacaacaatacattttgtttgtgccagggatattgaagctga 738  Q
    |||       ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26758344 gtc-------tccatagctgacaaagagtgccatggatgtcactcatacaacacgagagacaacaatacattttgtttgtgccagggatattgaagctga 26758252  T
Q  739 aggtcgggtgatgtgatgtttctgccactgcgtcattgagtgggaactgcaaacatttgaccgagatcaaaagtttgagggatcacatc-aggaatgtc 836  Q
    ||||||||||||||||||||||||||| ||||||||||||  |||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  26758251 aggtcgggtgatgtgatgtttctgccaatgcgtcattgag-cggaactgcgaacatttgactgagatcaaaagtttgagggatcacatcaaggaatgtc 26758154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 510 - 638
Target Start/End: Original strand, 27420814 - 27420943
Alignment:
Q  510 aaagaaaatttactggttgaaaatgctgcaaggacaaacaatacattgtgtttgtgcccaaacgatactc-tgtgaccaccaaaagaacagtattcatcc 608  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||| ||||| ||| ||||||||||| |||||||    
T  27420814 aaagcaaatttactggttgaaaatgcagcaaggacaaacaatacattgtgactgtgcccaaacgatactcatgtgatcacgaaaagaacagtgttcatcc 27420913  T
Q  609 atttcctactcttatttcctatttgcaatg 638  Q
    |||||||||||||||||||||| |||||||    
T  27420914 atttcctactcttatttcctatatgcaatg 27420943  T

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Target: chr6; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 26652661 - 26652576
Alignment:
Q  9 ccttaaaaatcaatgtcaatgccttaaaatcaaagtgacatttccaagtgggaacttaaaaattaattgagagcggatattttgtt 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26652661 ccttaaaaatcaatgtcaatgccttaaaatcaaagtgacatttccaagtgggaacttcaaaattaattgagagcggatattttgtt 26652576  T

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Target: chr6; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 26758629 - 26758544
Alignment:
Q  9 ccttaaaaatcaatgtcaatgccttaaaatcaaagtgacatttccaagtgggaacttaaaaattaattgagagcggatattttgtt 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26758629 ccttaaaaatcaatgtcaatgccttaaaatcaaagtgacatttccaagtgggaacttcaaaattaattgagagcggatattttgtt 26758544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 722 - 806
Target Start/End: Complemental strand, 31289975 - 31289892
Alignment:
Q  722 agggatattgaagctgaaggtcgggtgatgtgatgtttctgccactgcgtcattgagtgggaactgcaaacatttgaccgagatc 806  Q
    ||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||| ||||||||||||||||||||| ||||    
T  31289975 agggatattgaagctgaaggtcgggtgttgtgatgtttccaccactgcgtcagtgagt-ggaactgcaaacatttgaccgggatc 31289892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 28918168 - 28918251
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  ||||||||||||  ||| |||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  28918168 gtgtgtttggatggaggaatgttttgagggaatgtaatgttttaaggaaattcaaatactttgaggtgaatttcattgtttgga 28918251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 300 - 410
Target Start/End: Original strand, 27420571 - 27420681
Alignment:
Q  300 taaaagaacaaatcttcttaatgctcctgttagcggaaacgttattgacagtctgtagctaaaaactgaaacgattcaaactaatttacgttttcttctt 399  Q
    ||||| |||||| | | |||||||| ||||||| |||||  || |||||||||||||||| ||||||||||| |||||||||||||  |||||| | |||    
T  27420571 taaaacaacaaaccatattaatgcttctgttagaggaaattttgttgacagtctgtagcttaaaactgaaacaattcaaactaattagcgttttgtactt 27420670  T
Q  400 tgctgcatagc 410  Q
    ||| |||||||    
T  27420671 tgccgcatagc 27420681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 27605649 - 27605829
Alignment:
Q  9 ccttaaaaatcaatgtcaatgccttaaaa-tcaaagtgacatttccaagtgggaacttaaaaattaattgagagc--ggatattttgtttagacctcaaa 105  Q
    |||||||| ||||||| |||||||||||| ||||| ||| |||| |||||||||   ||||||| ||||||||||   |||||||||||||||||| |||    
T  27605649 ccttaaaagtcaatgttaatgccttaaaagtcaaactgaaattttcaagtgggatgctaaaaatgaattgagagctgtgatattttgtttagaccttaaa 27605748  T
Q  106 agttnnnnnnnngtcgttctcatatttcctgtgtttgtgtccaaacaaatacttaatctcgtctatcgaactgacatttccaact 190  Q
    |||         ||| || | ||||||  |||||||| | || ||||||||||||||||| ||| | ||||||||||||||||||    
T  27605749 agt----caaaagtcattatgatatttattgtgtttgcggccgaacaaatacttaatctcatctttggaactgacatttccaact 27605829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 26654595 - 26654493
Alignment:
Q  9 ccttaaaaatcaatgtcaatgcctt-aaaatcaaagtgacatttccaagtgggaacttaaaaattaattgagagc--ggatattttgtttagacctcaaa 105  Q
    |||||||||| |||||||||||||| ||||||||| |||||||| |||||| || |||| |||| |||||| |||   |||||||||||||||| |||||    
T  26654595 ccttaaaaattaatgtcaatgccttaaaaatcaaactgacattttcaagtgagaccttagaaatgaattgacagctgtgatattttgtttagacttcaaa 26654496  T
Q  106 agt 108  Q
    |||    
T  26654495 agt 26654493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 26760565 - 26760463
Alignment:
Q  9 ccttaaaaatcaatgtcaatgcctt-aaaatcaaagtgacatttccaagtgggaacttaaaaattaattgagagc--ggatattttgtttagacctcaaa 105  Q
    |||||||||| |||||||||||||| ||||||||| |||||||| |||||| || |||| |||| |||||| |||   |||||||||||||||| |||||    
T  26760565 ccttaaaaattaatgtcaatgccttaaaaatcaaactgacattttcaagtgagaccttagaaatgaattgacagctgtgatattttgtttagacttcaaa 26760466  T
Q  106 agt 108  Q
    |||    
T  26760465 agt 26760463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 720 - 778
Target Start/End: Original strand, 27421105 - 27421163
Alignment:
Q  720 ccagggatattgaagctgaaggtcgggtgatgtgatgtttctgccactgcgtcattgag 778  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| || |||| ||||    
T  27421105 ccagggatattgaagctgaaggtcgggtgttgtgatgtttctgccattgtgtcagtgag 27421163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 27334565 - 27334735
Alignment:
Q  9 ccttaaaaatcaatgtcaatgccttaaaa-tcaaagtgacatttccaagtgggaacttaaaaattaattgagagcgg--atattttgtttagacctcaaa 105  Q
    |||| |||||||||||||||| ||||||| ||||| |||||||| ||| ||||  | |||||||||||  ||| | |  |||||||||||||||||||||    
T  27334565 cctttaaaatcaatgtcaatgacttaaaaatcaaactgacattttcaaatgggtccctaaaaattaatcaagaactgtgatattttgtttagacctcaaa 27334664  T
Q  106 agttnnnnnnnngtcgttctcatatttcctgtgtttgtgtccaaacaaatacttaatctcgtctatcgaactgacattt 184  Q
    ||||        |||||||| ||||||  | |||    |||||||||||||||||||||| ||||| ||||||||||||    
T  27334665 agttaaaa----gtcgttctgatatttattatgt----gtccaaacaaatacttaatctcatctattgaactgacattt 27334735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 27395305 - 27395475
Alignment:
Q  9 ccttaaaaatcaatgtcaatgccttaaaa-tcaaagtgacatttccaagtgggaacttaaaaattaattgagagcgg--atattttgtttagacctcaaa 105  Q
    |||| |||||||||||||||| ||||||| ||||| |||||||| ||| ||||  | |||||||||||  ||| | |  |||||||||||||||||||||    
T  27395305 cctttaaaatcaatgtcaatgacttaaaaatcaaactgacattttcaaatgggtccctaaaaattaatcaagaactgtgatattttgtttagacctcaaa 27395404  T
Q  106 agttnnnnnnnngtcgttctcatatttcctgtgtttgtgtccaaacaaatacttaatctcgtctatcgaactgacattt 184  Q
    ||||        |||||||| ||||||  | |||    |||||||||||||||||||||| ||||| ||||||||||||    
T  27395405 agttaaaa----gtcgttctgatatttattatgt----gtccaaacaaatacttaatctcatctattgaactgacattt 27395475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 26901805 - 26901746
Alignment:
Q  230 taatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggata 289  Q
    |||| ||||||||| ||| |||||||||| ||||||||||||||||||||| ||||||||    
T  26901805 taatgtaatattttgagggaattcaaataattttaggtgaatttcattgttcggaggata 26901746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 1368480 - 1368563
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  ||||||||||||  ||| ||||||||||||| |||||||||  ||| |||||||||  ||||||||||    
T  1368480 gtgtgtttggatggaggaatgttttgagagaatgtaatattttaagggaattcaaatgttttgaggtgaattctattgtttgga 1368563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 13487292 - 13487361
Alignment:
Q  215 gggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  ||| || | || | ||| |||||||||||||| |||||||||||||||||||||    
T  13487292 gggaatgttttgagggaatgtagtgttatgagggaattcaaatactttgaggtgaatttcattgtttgga 13487361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 15832503 - 15832552
Alignment:
Q  235 taatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||| |||||||| ||||||||||||||  ||||||||||||||||||||    
T  15832503 taatgttttaagggaattcaaatactttggggtgaatttcattgtttgga 15832552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 720 - 769
Target Start/End: Complemental strand, 26632842 - 26632793
Alignment:
Q  720 ccagggatattgaagctgaaggtcgggtgatgtgatgtttctgccactgc 769  Q
    ||||||||| ||||||||||||||||||| |||||||||||  |||||||    
T  26632842 ccagggatactgaagctgaaggtcgggtgttgtgatgtttccaccactgc 26632793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 720 - 769
Target Start/End: Complemental strand, 26738818 - 26738769
Alignment:
Q  720 ccagggatattgaagctgaaggtcgggtgatgtgatgtttctgccactgc 769  Q
    ||||||||| ||||||||||||||||||| |||||||||||  |||||||    
T  26738818 ccagggatactgaagctgaaggtcgggtgttgtgatgtttccaccactgc 26738769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 31282928 - 31282880
Alignment:
Q  11 ttaaaaatcaatgtcaatgcctt-aaaatcaaagtgacatttccaagtg 58  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| |||||    
T  31282928 ttaaaaatcaatgtcaatgccttaaaaatcaaaatgacatttctaagtg 31282880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 34245050 - 34244967
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  ||||||||||||  ||| |||| |||| ||| |||||||||||||| | || |||| |||||||||||    
T  34245050 gtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaaatactttgatgtaaattccattgtttgga 34244967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 776236 - 776155
Alignment:
Q  203 gtgtgtttggatgggaa--tgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 282  Q
    |||||||||||| ||||  |||||||||  ||| |||| |||| ||||||||||| |||||| |||||||||  ||||||||    
T  776236 gtgtgtttggataggaaaatgttttgagggaatgtaatgttttgaggaaattcaactactttaaggtgaattctattgtttg 776155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 295
Target Start/End: Complemental strand, 29395573 - 29395495
Alignment:
Q  217 gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttgg 295  Q
    |||||||||||| |||| ||||||| | ||| | ||||||| |||||| || |||||||||| ||||| |||| |||||    
T  29395573 gaatgttttgaggtaatgtaatattgtgagggagttcaaatgcttttaagtcaatttcattggttggatgataatttgg 29395495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 90; Significance: 5e-43; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 510 - 638
Target Start/End: Complemental strand, 66549 - 66420
Alignment:
Q  510 aaagaaaatttactggttgaaaatgctgcaaggacaaacaatacattgtgtttgtgcccaaacgatactc-tgtgaccaccaaaagaacagtattcatcc 608  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||| ||||| ||| ||||||||||| |||||||    
T  66549 aaagcaaatttactggttgaaaatgcagcaaggacaaacaatacattgtgactgtgcccaaacgatactcatgtgatcacgaaaagaacagtgttcatcc 66450  T
Q  609 atttcctactcttatttcctatttgcaatg 638  Q
    |||||||||||||||||||||| |||||||    
T  66449 atttcctactcttatttcctatatgcaatg 66420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 300 - 410
Target Start/End: Complemental strand, 66792 - 66682
Alignment:
Q  300 taaaagaacaaatcttcttaatgctcctgttagcggaaacgttattgacagtctgtagctaaaaactgaaacgattcaaactaatttacgttttcttctt 399  Q
    ||||| |||||| | | |||||||| ||||||| |||||  || |||||||||||||||| ||||||||||| |||||||||||||  |||||| | |||    
T  66792 taaaacaacaaaccatattaatgcttctgttagaggaaattttgttgacagtctgtagcttaaaactgaaacaattcaaactaattagcgttttgtactt 66693  T
Q  400 tgctgcatagc 410  Q
    ||| |||||||    
T  66692 tgccgcatagc 66682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 720 - 778
Target Start/End: Complemental strand, 66258 - 66200
Alignment:
Q  720 ccagggatattgaagctgaaggtcgggtgatgtgatgtttctgccactgcgtcattgag 778  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| || |||| ||||    
T  66258 ccagggatattgaagctgaaggtcgggtgttgtgatgtttctgccattgtgtcagtgag 66200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 203 - 294
Target Start/End: Original strand, 42776640 - 42776733
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 294  Q
    ||||||||||||||  ||||||||| || | || |||| |||| || ||||||||||||||||||||||||||||||||||||| |||| ||||    
T  42776640 gtgtgtttggatggaagaatgtttttaggttatgtaatgttttgagtaaattcaaatacttttaggtgaatttcattgtttggatgataatttg 42776733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 41139478 - 41139559
Alignment:
Q  203 gtgtgtttggatgggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||| | | |||||| |||| |||| |||| ||||||||||||||||||||||||||||  ||||||||||    
T  41139478 gtgtgtttggatggggaagctttgaggtaatgtaatgttttgaggaaattcaaatacttttaggtgaattctattgtttgga 41139559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 1539659 - 1539727
Alignment:
Q  216 ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||  ||| |||| |||| ||| |||||||||||||| |||||||||||||||||||||    
T  1539659 ggaatgttttgagggaatgtaatgttttgagggaattcaaatactttgaggtgaatttcattgtttgga 1539727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 10633035 - 10633118
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| |||| || | ||| |||||||||||||| |||||||||||||||||||||    
T  10633035 gtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaatttcattgtttgga 10633118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 31473852 - 31473935
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| |||| || | ||| |||||||||||||| |||||||||| ||||||||||    
T  31473852 gtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattttattgtttgga 31473935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 36456082 - 36456011
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatt 272  Q
    ||||||||||||||  ||||||||||||  ||| ||||||||| ||||||||||| |||||| |||||||||    
T  36456082 gtgtgtttggatggaggaatgttttgagggaatgtaatattttgaggaaattcaactactttaaggtgaatt 36456011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 55266931 - 55266852
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtt 280  Q
    ||||||||||||||  ||||||||||||  ||| ||||||||| ||| ||||||| |||||| |||||||||| ||||||    
T  55266931 gtgtgtttggatggatgaatgttttgaggaaatataatattttgagggaattcaactactttaaggtgaattttattgtt 55266852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 284
Target Start/End: Original strand, 17727116 - 17727151
Alignment:
Q  249 aattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||| |||||||||||||||||||||    
T  17727116 aattcaaatactttgaggtgaatttcattgtttgga 17727151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 284
Target Start/End: Complemental strand, 40338274 - 40338239
Alignment:
Q  249 aattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||| |||||||||||||||||||||    
T  40338274 aattcaaatactttgaggtgaatttcattgtttgga 40338239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 289
Target Start/End: Original strand, 52493929 - 52494015
Alignment:
Q  203 gtgtgtttggatggg-aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggata 289  Q
    ||||||||||||||| ||||||||||  |||| |||| ||| | |||| || ||||| ||||||||||||||| ||||||||| ||||    
T  52493929 gtgtgtttggatggggaatgttttgaagtaatgtaatgtttgagggaa-ttaaaatatttttaggtgaatttcgttgtttggatgata 52494015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 5715747 - 5715808
Alignment:
Q  203 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttt 262  Q
    |||||||||||||  ||||||||||||| |||| |||| |||| ||| ||||||||||||||    
T  5715747 gtgtgtttggatgagggaatgttttgagataatgtaatgttttgaggtaattcaaatacttt 5715808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 27284693 - 27284651
Alignment:
Q  240 ttttaaggaaattcaaatacttttaggtgaatttcattgtttg 282  Q
    |||||||  |||||||||||||| |||||||||||||||||||    
T  27284693 ttttaagagaattcaaatactttgaggtgaatttcattgtttg 27284651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 36455910 - 36455991
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 282  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||  ||||||||    
T  36455910 gtgtgtttggatgggggaatgttttgagggaatctaatgttttgagggaattcaactactttaaggtgaattctattgtttg 36455991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 36103104 - 36103187
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  ||||||||||||  ||| |||| ||||||||||||||||||||||| | ||||||| |||||||||||    
T  36103104 gtgtgtttggatggaggaatgttttgagggaatgtaatgttttaaggaaattcaaatactttgatgtgaattgcattgtttgga 36103187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 35404813 - 35404739
Alignment:
Q  210 tggatgggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  ||| |||| ||||||||| |||||||||||||||||| |||||||||| | ||||||||    
T  35404813 tggatgggaatgttacgaggtaatgtaatattttgaggaaattcaaatactttgaggtgaattttactgtttgga 35404739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 14242 - 14321
Alignment:
Q  203 gtgtgtttggatggg-aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgttt 281  Q
    ||||||||||||||| ||||||| |||  ||| |||| |||||||| ||||||||||||||  |||||||||||||||||    
T  14242 gtgtgtttggatggggaatgtttggagggaatgtaatgttttaagggaattcaaatactttggggtgaatttcattgttt 14321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 8049271 - 8049340
Alignment:
Q  215 gggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  ||| |||| |||| ||| |||||||||||||| |||| ||||||||||||||||    
T  8049271 gggaatgttttgagggaatataatgttttgagggaattcaaatactttgaggtaaatttcattgtttgga 8049340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 515612 - 515529
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  |||||||||||   ||| |||| |||||||| | |||||||||||| | |||||||||||||||||||    
T  515612 gtgtgtttggatggaggaatgttttgaaggaatgtaatgttttaagggagttcaaatactttgatgtgaatttcattgtttgga 515529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 29257431 - 29257348
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  |||||||| |||||||||||    
T  29257431 gtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtgaattccattgtttgga 29257348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 44889357 - 44889440
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  ||||||||||||  ||| |||| |||| ||| |||||||||||||| | ||||||| |||||||||||    
T  44889357 gtgtgtttggatggaggaatgttttgagggaatataatgttttgagggaattcaaatactttgatgtgaattccattgtttgga 44889440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 44346757 - 44346675
Alignment:
Q  204 tgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  |||||||| |||||||||||    
T  44346757 tgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtgaattccattgtttgga 44346675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 3853619 - 3853700
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 282  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||||||||||| |||||| |||||||||  ||||||||    
T  3853619 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggaaattcaactactttgaggtgaattctattgtttg 3853700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 3858077 - 3858158
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 282  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||||||||||| |||||| |||||||||  ||||||||    
T  3858077 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggaaattcaactactttgaggtgaattctattgtttg 3858158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 33986007 - 33986087
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgttt 281  Q
    |||||||||||||||  ||||| ||||  |||| |||| |||| ||  |||||||||||||| ||||||||||||||||||    
T  33986007 gtgtgtttggatgggggaatgtcttgaagtaatgtaatgttttgagagaattcaaatactttgaggtgaatttcattgttt 33986087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 23011737 - 23011820
Alignment:
Q  203 gtgtgtttggatggga--atgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||| ||||  ||||||||||  ||| |||| || | ||| |||||||||||||| ||||||||| |||||||||||    
T  23011737 gtgtgtttggacgggagaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattccattgtttgga 23011820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 29611412 - 29611456
Alignment:
Q  240 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||| ||| |||||||||||||| |||||||||||||||||||||    
T  29611412 ttttgagggaattcaaatactttgaggtgaatttcattgtttgga 29611456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 33377377 - 33377294
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| || | |||| ||| ||||||||||||||  |||||||| |||||||||||    
T  33377377 gtgtgtttggatgggggaatgttttgagggaatatattgttttgagggaattcaaatactttggggtgaattccattgtttgga 33377294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 35979084 - 35979001
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  ||||||||||||  ||| |||| ||   ||| |||||||||||||| ||||||||| |||||||||||    
T  35979084 gtgtgtttggatggaggaatgttttgagggaatgtaatcttaagagggaattcaaatactttgaggtgaattccattgtttgga 35979001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 24044963 - 24045045
Alignment:
Q  203 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgg 283  Q
    |||||||||||||  |||||||||||||  ||| |||| |||| | | ||||||||||| || ||||||||| ||||||||||    
T  24044963 gtgtgtttggatgagggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtgaattccattgtttgg 24045045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 294
Target Start/End: Complemental strand, 28324742 - 28324649
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 294  Q
    ||||||||||||||  ||||||||||||  ||| |||| |||| | | ||||||||||| || || |||||| |||||||||||  ||||||||    
T  28324742 gtgtgtttggatggaggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgagctgaattacattgtttggataatagtttg 28324649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 15186880 - 15186815
Alignment:
Q  218 aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgg 283  Q
    ||||||||||| |||| |||| |||| || ||||||||||| ||| |||||||||  |||||||||    
T  15186880 aatgttttgagataatgtaatgttttgagtaaattcaaatagtttaaggtgaattctattgtttgg 15186815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 13017782 - 13017865
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||| |  |||||||||||  ||| ||||||||||||| |||||||||||||| ||||||||| |||||||||||    
T  13017782 gtgtgtttggatgtggaaatgttttgagggaatgtaatattttaagggaattcaaatactttgaggtgaattccattgtttgga 13017865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 769039 - 769122
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  |||||||| |||||||||||    
T  769039 gtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtgaattccattgtttgga 769122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 1583879 - 1583796
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  |||||||| |||||||||||    
T  1583879 gtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtgaattccattgtttgga 1583796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 2274858 - 2274775
Alignment:
Q  203 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||  ||||||||| ||| ||||  |||||||||||| |||||||||| |||||| | |||| |||||||||||    
T  2274858 gtgtgtttggatgaaggaatgtttcgaggtaatacaatattttaagggaattcaaatatttttagatcaattccattgtttgga 2274775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 11141308 - 11141391
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  |||||||| |||||||||||    
T  11141308 gtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtgaattacattgtttgga 11141391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 33189327 - 33189244
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  |||||||| |||||||||||    
T  33189327 gtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtgaattccattgtttgga 33189244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 294
Target Start/End: Original strand, 30698298 - 30698377
Alignment:
Q  215 gggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 294  Q
    ||||||||||||||  ||| |||| |||| | | ||||||||||| || |||||||||||||||||||||  ||||||||    
T  30698298 gggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtgaatttcattgtttggataatagtttg 30698377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 31613849 - 31613903
Alignment:
Q  235 taatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggata 289  Q
    ||||||||| |||||||||||||| ||||| || |||||||||||||||| ||||    
T  31613849 taatattttgaggaaattcaaatatttttaagtaaatttcattgtttggatgata 31613903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 10480122 - 10480205
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| |||| ||   ||| |||||||||||||| ||||||||| |||||||||||    
T  10480122 gtgtgtttggatgggggaatgttttgagggaatgtaatgttacgagggaattcaaatactttgaggtgaattccattgtttgga 10480205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 11532323 - 11532240
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  ||| ||| |||  ||| |||| |||| ||| |||||||||||||| ||||||||| |||||||||||    
T  11532323 gtgtgtttggatgggggaatatttggagggaatgtaatgttttgagggaattcaaatactttgaggtgaattccattgtttgga 11532240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 11793898 - 11793981
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  ||| |||||||  ||| |||| || | ||| |||||||||||||| ||||||||| |||||||||||    
T  11793898 gtgtgtttggatgggggaatattttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattccattgtttgga 11793981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 35047749 - 35047666
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  |||||||| || ||||||||    
T  35047749 gtgtgtttggatgggggaatgttttgaggaaatgtattgttttaagggaattcaaatactttggggtgaattccaatgtttgga 35047666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 249 - 283
Target Start/End: Complemental strand, 7167689 - 7167655
Alignment:
Q  249 aattcaaatacttttaggtgaatttcattgtttgg 283  Q
    |||||||||||||| ||||||||||||||||||||    
T  7167689 aattcaaatactttgaggtgaatttcattgtttgg 7167655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 294
Target Start/End: Complemental strand, 7228082 - 7227989
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 294  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| | | |||| |||||| || |||| ||||||||||||||||  ||||||||    
T  7228082 gtgtgtttggatggggaaatgttttgagagaatgtaatgttttgaaggaatttaaataccttgaggtaaatttcattgtttggataatagtttg 7227989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 27033493 - 27033574
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 282  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||  ||||||||    
T  27033493 gtgtgtttggatgggggaatgttttgagagaatgtaatgttttgagggaattcaactactttgaggtgaattctattgtttg 27033574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 11606730 - 11606799
Alignment:
Q  215 gggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||   ||| ||||||||| | | ||| |||||||||| |||||||||| ||||||||||    
T  11606730 gggaatgttttgaaggaatgtaatattttcaaggaatacaaatactttgaggtgaatttaattgtttgga 11606799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 51847854 - 51847948
Alignment:
Q  202 tgtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttgg 295  Q
    |||||||||||||||  |||||||||||| |||| |||| |||||| ||||||||||||| |||||||||||| ||| ||||||| |||| |||||    
T  51847854 tgtgtgtttggatggaggaatgttttgaggtaatgtaatgttttaaagaaattcaaatac-tttaggtgaattccatcgtttggatgataatttgg 51847948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 946929 - 946999
Alignment:
Q  214 tgggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  ||| || |||||| |||||||||||||||| | ||||||||| |||||||||||    
T  946929 tgggaatgttttgagggaatgtattattttgaggaaattcaaatactatgaggtgaattccattgtttgga 946999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 24273290 - 24273207
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| |||| || | ||| |||||||||||||| ||||||||| |||||||||||    
T  24273290 gtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattccattgtttgga 24273207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 26501149 - 26501066
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  ||||||||||||  ||| |||| |||| ||| |||||||||||||| | ||||||| |||||||||||    
T  26501149 gtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaaatactttgatgtgaattccattgtttgga 26501066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 47165282 - 47165199
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||   |||||||||||  ||| |||| |||| ||| |||||||||||||| ||||||||| |||||||||||    
T  47165282 gtgtgtttggatggagaaatgttttgaggaaatgtaatgttttgagggaattcaaatactttaaggtgaattccattgtttgga 47165199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 289
Target Start/End: Original strand, 8224771 - 8224859
Alignment:
Q  203 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggata 289  Q
    |||||||||||||  |||||||||||||  ||| |||| |||| ||| |||| ||||||||| | ||||||| ||||||||||| ||||    
T  8224771 gtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaattgaaatactttgatgtgaattccattgtttggatgata 8224859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 47820255 - 47820299
Alignment:
Q  240 ttttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||| ||||||||||||||  ||||||||||||||||||||    
T  47820255 ttttaagggaattcaaatactttagggtgaatttcattgtttgga 47820299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 6470756 - 6470675
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 282  Q
    ||||||||||||||  ||||||||||||  ||| |||| |||| ||| ||||||||| |||| ||||| ||| |||||||||    
T  6470756 gtgtgtttggatggcggaatgttttgagagaatgtaatgttttgagggaattcaaattctttgaggtggattccattgtttg 6470675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 15034662 - 15034743
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 282  Q
    ||||||||||||||  ||||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||  ||||||||    
T  15034662 gtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaactactttaaggtgaattctattgtttg 15034743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 43623048 - 43622967
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 282  Q
    |||||||||||||||  ||||||||||   ||| |||| |||| || ||||| ||||||||| |||||||||||||| ||||    
T  43623048 gtgtgtttggatgggggaatgttttgatggaatgtaatgttttgagaaaatttaaatactttgaggtgaatttcattatttg 43622967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 34003512 - 34003557
Alignment:
Q  249 aattcaaatacttttaggtgaatttcattgtttggaggatagtttg 294  Q
    |||||||||||||| ||||||||| ||||||||||| |||| ||||    
T  34003512 aattcaaatactttgaggtgaattccattgtttggatgataatttg 34003557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 37037020 - 37036940
Alignment:
Q  202 tgtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtt 280  Q
    ||||||||||||||  |||||||||||||| ||| |||| |||| ||| |||||||||| ||| | || |||| |||||||    
T  37037020 tgtgtgtttggatgagggaatgttttgagtgaatgtaatgttttgagggaattcaaatattttgatgtaaattccattgtt 37036940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 284
Target Start/End: Complemental strand, 37448457 - 37448388
Alignment:
Q  215 gggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  ||| |||| |||| ||| |||| ||||||||| | ||||||| |||||||||||    
T  37448457 gggaatgttttgagagaatgtaatgttttgagggaatttaaatactttgatgtgaattccattgtttgga 37448388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 44570697 - 44570774
Alignment:
Q  217 gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 294  Q
    ||||||||||||  ||| |||| |||| | | ||||||||||| || ||||||||| |||||||||||  ||||||||    
T  44570697 gaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtgaattccattgtttggataatagtttg 44570774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 203 - 294
Target Start/End: Complemental strand, 25189282 - 25189189
Alignment:
Q  203 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 294  Q
    |||||||||||||  ||||||||||||| ||||  ||| |||| ||| |||||||||||||| | ||||||||||||||||||| |||| ||||    
T  25189282 gtgtgtttggatgtgggaatgttttgaggtaatgcaatgttttgagggaattcaaatactttgaagtgaatttcattgtttggatgataatttg 25189189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 23548667 - 23548584
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  ||||||||||||  ||| || | |||| ||||||||||||||||||  |||||||| |||||||||||    
T  23548667 gtgtgtttggatggaggaatgttttgagggaatgtattgttttgaggaaattcaaatactttggggtgaattccattgtttgga 23548584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 26162193 - 26162110
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| |||| || | ||| |||||||||||||| ||||||||| |||||||||||    
T  26162193 gtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattccattgtttgga 26162110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 39342698 - 39342615
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  |||||||| |||||||||||    
T  39342698 gtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtgaattccattgtttgga 39342615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 31632725 - 31632806
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 282  Q
    |||||||||||||||  |||||||||||  ||| |||| || | ||| |||||||||||||| ||||||||| |||||||||    
T  31632725 gtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattccattgtttg 31632806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 19865571 - 19865530
Alignment:
Q  240 ttttaaggaaattcaaatacttttaggtgaatttcattgttt 281  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  19865571 ttttgaggaaattcaaatactttgaggtgaatttcattgttt 19865530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 6498821 - 6498738
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  ||||||||||||  ||| |||| |||| ||| |||||||||||||| | ||||||  |||||||||||    
T  6498821 gtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaaatactttgatgtgaataccattgtttgga 6498738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 14603318 - 14603235
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  ||| |||| |||||||||||    
T  14603318 gtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtaaattccattgtttgga 14603235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 18789302 - 18789219
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  |||| |||||||  ||| |||| || | ||| |||||||||||||| ||||||||| |||||||||||    
T  18789302 gtgtgtttggatggaggaatattttgagagaatataatgttatgagggaattcaaatactttaaggtgaattccattgtttgga 18789219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 28539224 - 28539141
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| || | |||| ||| ||||||||||||||  |||||||| |||||||||||    
T  28539224 gtgtgtttggatgggggaatgttttgagggaatgtattgttttgagggaattcaaatactttggggtgaattccattgtttgga 28539141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 35455807 - 35455890
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  ||| |||| |||||||||||    
T  35455807 gtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtaaattccattgtttgga 35455890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 35777011 - 35776928
Alignment:
Q  203 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||  |||||||||||||  ||| |||| || | ||| |||||||||||||| ||||||||| |||| ||||||    
T  35777011 gtgtgtttggatgagggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattccattatttgga 35776928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 5976616 - 5976549
Alignment:
Q  215 gggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 282  Q
    |||||||||||||| |||| |||||||||   | ||| |||||| |||||| ||||||||||||||||    
T  5976616 gggaatgttttgaggtaatataatattttgtcgtaatacaaatatttttagctgaatttcattgtttg 5976549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 23455302 - 23455220
Alignment:
Q  204 tgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||  |||||||||||||  ||| || | |||| ||| ||||||||||||||  |||||||| |||||||||||    
T  23455302 tgtgtttggatgagggaatgttttgagggaatgtattgttttgagggaattcaaatactttggggtgaattccattgtttgga 23455220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 30629061 - 30629143
Alignment:
Q  204 tgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  |||||||||||  ||| || | |||||||  |||| |||||||||  ||||||||||||||||||||    
T  30629061 tgtgtttggatgggggaatgttttgagggaatgtattgttttaagagaatttaaatactttggggtgaatttcattgtttgga 30629143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 29065822 - 29065903
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 282  Q
    ||||||||||||||  ||||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||  ||||||||    
T  29065822 gtgtgtttggatggatgaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaattctattgtttg 29065903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 30080818 - 30080764
Alignment:
Q  240 ttttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 294  Q
    |||| |||||||| ||||||||| ||||||||| ||||||||||| |||| ||||    
T  30080818 ttttgaggaaatttaaatactttcaggtgaattccattgtttggatgataatttg 30080764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 284
Target Start/End: Complemental strand, 29639257 - 29639188
Alignment:
Q  215 gggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||| ||  ||| |||| || | |||||||||||||| ||| ||||||||| |||||||||||    
T  29639257 gggaatgttttcagggaatgtaatgttatgaggaaattcaaatattttgaggtgaattccattgtttgga 29639188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 294
Target Start/End: Complemental strand, 34115702 - 34115610
Alignment:
Q  204 tgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 294  Q
    |||||||||||||  |||||||||||||||||  ||| |||| ||  ||||||||| |||||| || ||  |||||||||||  |||||||||    
T  34115702 tgtgtttggatggaggaatgttttgagttaataaaatgttttgagataattcaaatccttttacgtaaacctcattgtttgggtgatagtttg 34115610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 40110740 - 40110820
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgttt 281  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||  |||||||    
T  40110740 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttaaggtgaattctattgttt 40110820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 19533974 - 19533891
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  ||||||||||||  ||| |||| || | ||| |||||||||||||| |||||||||||||||||||||    
T  19533974 gtgtgtttggatggaggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaatttcattgtttgga 19533891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 25935357 - 25935274
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| |||| || | |||||||||||||||||| ||||||||| |||||||||||    
T  25935357 gtgtgtttggatgggggaatgttttgagggaatgtaatgttatgaggaaattcaaatactttgaggtgaattccattgtttgga 25935274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 284
Target Start/End: Complemental strand, 8674538 - 8674460
Alignment:
Q  206 tgtttggatgggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||| ||| |||||| |||| |||| ||||||| |||||||| || ||||| ||||||| |||||||||||    
T  8674538 tgtttggatggggatgctttgaggtaatataatgttttaagaaaattcaattaattttaagtgaattccattgtttgga 8674460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 14834827 - 14834910
Alignment:
Q  203 gtgtgtttggatggga--atgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||| ||||||  |||||| |||  ||| |||| |||||||| ||| |||||||||| |||||||||||||||||||||    
T  14834827 gtgtgtttgcatgggagaatgtttcgagggaatgtaatgttttaagggaatccaaatactttgaggtgaatttcattgtttgga 14834910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 22766955 - 22767038
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||| |||||||||||||| |||||||||  ||||||||||    
T  22766955 gtgtgtttggatgggggaatgttttgagggaatataatgttttgagggaattcaaatactttaaggtgaattctattgtttgga 22767038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 294
Target Start/End: Original strand, 35379347 - 35379439
Alignment:
Q  203 gtgtgtttggatggg-aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 294  Q
    ||||||||||||||| ||||||||||| |||| |||| |||| ||| ||||||||| |||| | |||||||| |||| ||||| |||| ||||    
T  35379347 gtgtgtttggatggggaatgttttgagataatgtaatgttttgagggaattcaaattctttgaagtgaattttattgattggatgataatttg 35379439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 37722961 - 37722878
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  ||| |||||||  ||| |||| |||| ||| |||||||||||||| ||||||||| |||||||||||    
T  37722961 gtgtgtttggatgggggaatattttgagggaatgtaatgttttgagggaattcaaatactttgaggtgaattccattgtttgga 37722878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 40090481 - 40090398
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| | | |||||||||||||| ||||||||| |||||||||||    
T  40090481 gtgtgtttggatgggggaatgttttgaggaaatgtaatgttttgatggaattcaaatactttgaggtgaattccattgtttgga 40090398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 41762282 - 41762199
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| || | |||||||| ||||||||||||||  |||||||| |||||||||||    
T  41762282 gtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtgaattccattgtttgga 41762199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 283
Target Start/End: Complemental strand, 22303937 - 22303855
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgg 283  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| | | ||||||||||| || ||||||||||||||||||||    
T  22303937 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtgaatttcattgtttgg 22303855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 12479949 - 12479990
Alignment:
Q  240 ttttaaggaaattcaaatacttttaggtgaatttcattgttt 281  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  12479949 ttttgaggaaattcaaatactttgaggtgaatttcattgttt 12479990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 284
Target Start/End: Complemental strand, 37145554 - 37145485
Alignment:
Q  215 gggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  ||| |||| || | ||  |||||||||||||| |||||||||||||||||||||    
T  37145554 gggaatgttttgagggaatgtaatgttatgagagaattcaaatactttgaggtgaatttcattgtttgga 37145485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 927305 - 927388
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||||  |||||||||||  ||| || | |||| ||| ||||||||||||||  |||||||| |||||||||||    
T  927305 gtgtgtttggatggggaaatgttttgagggaatgtattgttttgagggaattcaaatactttggggtgaattccattgtttgga 927388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 20320715 - 20320632
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||   |||||||||||   ||| ||||||||||||| ||||||||||||||   ||||||| |||||||||||    
T  20320715 gtgtgtttggatgaatgaatgttttgaaggaatgtaatattttaagggaattcaaatactttggtgtgaattccattgtttgga 20320632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 37090284 - 37090367
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||| |  |||||||||||| ||||   || |||| |||||||||||||| ||||| ||||||| |||||||||||    
T  37090284 gtgtgtttggatagaagaatgttttgaggtaatgcgatgttttgaggaaattcaaatatttttatgtgaattccattgtttgga 37090367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 9894388 - 9894306
Alignment:
Q  204 tgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  |||||||||||  ||| |||| ||   ||| |||||||||||||| ||||||||| |||||||||||    
T  9894388 tgtgtttggatgggggaatgttttgagggaatgtaatgttaccagggaattcaaatactttgaggtgaattccattgtttgga 9894306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 8255059 - 8255112
Alignment:
Q  230 taatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||| |||| |||| ||| |||||||||| |||||||||||||||||||||||||    
T  8255059 taatgtaatgttttgagggaattcaaata-ttttaggtgaatttcattgtttgga 8255112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 20523289 - 20523208
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 282  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||| ||||||| |||||| |||||||||  ||||||||    
T  20523289 gtgtgtttggatgggggaatgttttgagagaatgtaatgttttgagggaattcaactactttaaggtgaattctattgtttg 20523208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 32250164 - 32250082
Alignment:
Q  203 gtgtgtttggatggg-aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||| |||||||||||  ||  |||| |||| ||| ||||||||||| || || |||||| |||||||||||    
T  32250164 gtgtgtttggatggggaatgttttgagggaaagtaatgttttgagggaattcaaataccttgagatgaattccattgtttgga 32250082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 50168668 - 50168596
Alignment:
Q  212 gatgggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||||| |||| |||| |||| |||||| ||||||| |||||| |||||| |||||||||||    
T  50168668 gatgggaatgttttgaggtaatgtaatgttttgaggaaactcaaataattttagctgaattccattgtttgga 50168596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 53129912 - 53129829
Alignment:
Q  203 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||  ||||||||| |||  ||| |||| |||||||| ||||||||||||||  |||||||| |||||||||||    
T  53129912 gtgtgtttggatgagggaatgtttcgagggaatgtaatgttttaagggaattcaaatactttggggtgaattccattgtttgga 53129829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 249 - 284
Target Start/End: Complemental strand, 9007476 - 9007441
Alignment:
Q  249 aattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||||||||||||||||||||||||    
T  9007476 aattcaaatacttttaggtgaatttcattgtttgga 9007441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 21307600 - 21307518
Alignment:
Q  204 tgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  ||||||||| |  ||| |||| |||| ||| |||||||||||||| ||||||||| |||||||||||    
T  21307600 tgtgtttggatgggggaatgttttgcgggaatgtaatgttttgagggaattcaaatactttgaggtgaattccattgtttgga 21307518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 46635860 - 46635926
Alignment:
Q  203 gtgtgtttggatgggaa--tgttttgagttaatttaatattttaaggaaattcaaatacttttaggt 267  Q
    ||||||||||||| |||  ||||||||| |||| |||| |||| |||||||||||||||||||||||    
T  46635860 gtgtgtttggatgagaaaatgttttgagctaatgtaatgttttgaggaaattcaaatacttttaggt 46635926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 294
Target Start/End: Original strand, 47767435 - 47767528
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 294  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| | | ||||||||||| || ||||||||| |||||||||||  ||||||||    
T  47767435 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtgaattacattgtttggataatagtttg 47767528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 19475834 - 19475902
Alignment:
Q  216 ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||  ||| |||| || | ||| |||||||||||||| ||||||||| |||||||||||    
T  19475834 ggaatgttttgagggaatgtaatgttatgaggtaattcaaatactttgaggtgaattccattgtttgga 19475902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 53470498 - 53470415
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||| |  |||||||||||  ||| || | |||| ||| ||||||||||||||  ||||||||||||||||||||    
T  53470498 gtgtgtttggatgaggaaatgttttgagggaatctattgttttgagggaattcaaatactttggggtgaatttcattgtttgga 53470415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 37054397 - 37054479
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgg 283  Q
    |||||||||||||||  |||||||| ||  ||| |||| |||| | | ||||||||||| || ||||||||||||||||||||    
T  37054397 gtgtgtttggatgggggaatgttttaagggaatgtaatgttttgaaggaattcaaataccttgaggtgaatttcattgtttgg 37054479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 283
Target Start/End: Complemental strand, 42006022 - 42005940
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgg 283  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| | | |||| |||||| || ||||||||||||||||||||    
T  42006022 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaaggaatttaaataccttgaggtgaatttcattgtttgg 42005940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 294
Target Start/End: Original strand, 7302349 - 7302442
Alignment:
Q  203 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 294  Q
    |||||||||||||  |||||||||||||  ||| |||| |||| | | |||||| |||| || ||||||||| |||||||||||  ||||||||    
T  7302349 gtgtgtttggatgagggaatgttttgagagaatgtaatgttttgaaggaattcagataccttgaggtgaattccattgtttggataatagtttg 7302442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 30766571 - 30766649
Alignment:
Q  216 ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttggaggatagtttg 294  Q
    |||||||||||||  ||| |||| |||| | | ||||||||||| || ||||||||| |||||||||||  ||||||||    
T  30766571 ggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtgaattccattgtttggataatagtttg 30766649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 44436261 - 44436342
Alignment:
Q  203 gtgtgtttggatggg--aatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttg 282  Q
    |||||||||||||||  |||||||||||  ||| |||| |||| ||||||||||| || ||| |||||||||  ||||||||    
T  44436261 gtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggaaattcaactattttaaggtgaattctattgtttg 44436342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 4568 - 4485
Alignment:
Q  203 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||  |||||||||||||  ||| |||| |||| |||||||||||||| |||  |||||||| |||||||||||    
T  4568 gtgtgtttggatgagggaatgttttgagggaatataatgttttgaggaaattcaaatattttggggtgaattccattgtttgga 4485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 5212 - 5129
Alignment:
Q  203 gtgtgtttggatg--ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||  |||||||||||||  ||| |||| |||| |||||||||||||| |||  |||||||| |||||||||||    
T  5212 gtgtgtttggatgagggaatgttttgagggaatataatgttttgaggaaattcaaatattttggggtgaattccattgtttgga 5129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 19854 - 19779
Alignment:
Q  203 gtgtgtttggatggga-atgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcatt 277  Q
    |||||||||||||||  ||||||||||  ||| |||| ||||||| ||||||||||||||| ||||||||| ||||    
T  19854 gtgtgtttggatgggggatgttttgagggaatgtaatgttttaagaaaattcaaatactttgaggtgaattacatt 19779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 7154 - 7237
Alignment:
Q  203 gtgtgtttggatgg--gaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    ||||||||||||||  ||||||||||||  ||| || | |||||||| ||||||||||||||   ||||||| |||||||||||    
T  7154 gtgtgtttggatggaggaatgttttgagggaatgtattgttttaagggaattcaaatactttggagtgaattccattgtttgga 7237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 4093 - 4161
Alignment:
Q  216 ggaatgttttgagttaatttaatattttaaggaaattcaaatacttttaggtgaatttcattgtttgga 284  Q
    |||||||||||||  ||| |||| |||| ||| |||||||||||||| |||||||||  ||||||||||    
T  4093 ggaatgttttgagagaatgtaatgttttgagggaattcaaatactttgaggtgaattctattgtttgga 4161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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