View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3048R-Insertion-20 (Length: 954)
Name: NF3048R-Insertion-20
Description: NF3048R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048R-Insertion-20 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 748; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 9 - 948
Target Start/End: Complemental strand, 46809293 - 46808362
Alignment:
| Q |
9 |
gatcaactgttagaaatagaaaaactagtattggtgtaaactatttatatatgtggtgcatgtgaggaaaagtttagcattatatatattacctgaaatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46809293 |
gatcaactgttagaaatagaaaaactagtattggtgtaaactatttatatatgtggtgcatgtgaggaaaagtttagcattatatatattacctgaaatt |
46809194 |
T |
|
| Q |
109 |
taccaggcctattaacaggtatgacgagatctactactctaagatcctcatcattgtcttggttaactagataagcagtcgagcccgcagggagtttaat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46809193 |
taccaggcctattaacaggtatgacgagatctactaccctaagatcctcatcattgtcttggttaactagataagcagtcgagcccgcagggagtttaat |
46809094 |
T |
|
| Q |
209 |
agtatcaccttgctcaaggttaaacgagtttctattgttggaatttaacacagtaagtatggctttccctgcatacacatataataacaaacaaattagt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46809093 |
agtatcaccttgctcaaggttaaacgagtttctattgttggaatttaacacagtaagtatggctttccctgcatacacatataataacaaacaaattagt |
46808994 |
T |
|
| Q |
309 |
tatgtatgtaaaatgaagaagaaaaactactattaatggatgttgaactcaaattcttccaacaatgcaagatgttatagtaatgtaacataataaaata |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46808993 |
tatgtatgtaaaatgaagaagaaaaactaccattaatggatgttgaactcaaattcttccaacaatgcaagatgttatagtaatataacataataaaata |
46808894 |
T |
|
| Q |
409 |
attacgtaccactaaggactacaaggatgaagtcggcatcagtgtggtgggggaggaagatggtgtggggttttgctctgtactccaaaagacggtagtt |
508 |
Q |
| |
|
|||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46808893 |
attacgcaccactgaggactacaaggataaagtcggcatcagtgtggtgggggaggaagatggtgtggggtttggctctgtactccaaaagacggtagtt |
46808794 |
T |
|
| Q |
509 |
ttttaaattttcaaataagtttgaacgtttgtcaaacctttggatgagacgaatgtgaccattttcgttctcaaagagtgtttggaacctgttagacctg |
608 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46808793 |
ttttaaattttgaaataagtttgaacgtttgtcaaacctttggatgagacgaatgtgaccattttcgttctcaaagagtgtttggaacctgttagacctg |
46808694 |
T |
|
| Q |
609 |
aacaaaaaagggtttcttcttccttctgactcagaagaaccttcttcctcctctccacgctcacggcgtgaaggtgtgcgtgaaggtctatcccctttct |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46808693 |
aacaaaaaagggtttcttcttccttctgactctgaagaaccttcttcctcctctccacgctcacgacgtgaaggtgtgcgtgaaggtctatcccctttct |
46808594 |
T |
|
| Q |
709 |
gatgttcttcttcctttttccttctctcctctctatgcctcaacctcgcccttctcatctgggattcttcatgacgttgggcgacctcttccaactcttt |
808 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| | |||| || |
|
|
| T |
46808593 |
gatgttcttcttccttttgccttctctcctctctatgcctcaacctcgccc-tctcatctgg--atcttcatgacgtt-ggcgacctct--ccactc-tt |
46808501 |
T |
|
| Q |
809 |
catcctctcgtttctcccaatttctctctttcacgtccaggtttgatgttttttggtcgctctcttttctctcg-tcctcctt--cacgtgaagggtctc |
905 |
Q |
| |
|
|||| ||||||||||||| ||||||| |||||||||||||| ||||||||||| ||||||| |||||| || |||||||| |||||||| |||||| |
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|
| T |
46808500 |
catcttctcgtttctccc-atttctccctttcacgtccagg-ttgatgttttt--gtcgctcctctttctcacgttcctcctttccacgtgaa-ggtctc |
46808406 |
T |
|
| Q |
906 |
cattgttcagggcgttgttc-tgggcttcccaccgaccttcgcg |
948 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||| ||||||||||| |
|
|
| T |
46808405 |
cattgttcagggcgttgttcttggcctttccaacgaccttcgcg |
46808362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 2e-33; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 403 - 604
Target Start/End: Complemental strand, 30285400 - 30285199
Alignment:
| Q |
403 |
aaaataattacgtaccactaaggactacaaggatgaagtcggcatcagtgtggtgggggaggaagatggtgtggggttttgctctgtactccaaaagacg |
502 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| |||||||| |||||| |||| || || || |||| |||||| ||||| | || ||||| || || |
|
|
| T |
30285400 |
aaaataattaattaccactaacgactacaagaatgaagtcagcatcattgtgttgtggaagaaagagggtgtgaggtttggagtgatattccaagagtcg |
30285301 |
T |
|
| Q |
503 |
gtagttttttaaattttcaaataagtttgaacgtttgtcaaacctttggatgagacgaatgtgaccattttcgttctcaaagagtgtttggaacctgtta |
602 |
Q |
| |
|
|||||||| | ||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||| |||||||| || ||||| ||||||||| |
|
|
| T |
30285300 |
gtagttttgaagattttcaaatattttggaacgtttgtcaaacctttggaggagacgaatgtgaccattttcattctcaaaaagagtttgaaacctgtta |
30285201 |
T |
|
| Q |
603 |
ga |
604 |
Q |
| |
|
|| |
|
|
| T |
30285200 |
ga |
30285199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 415 - 604
Target Start/End: Complemental strand, 30313895 - 30313706
Alignment:
| Q |
415 |
taccactaaggactacaaggatgaagtcggcatcagtgtggtgggggaggaagatggtgtggggttttgctctgtactccaaaagacggtagttttttaa |
514 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||||| |||| || || || |||| |||||| ||||| | || |||||||| || ||||||| | |
|
|
| T |
30313895 |
taccactaaggactgcaagaatgaagtcagcatcattgtgttgtggaagaaagagggtgtgaggtttggagtgatattccaaaagtcgatagttttggag |
30313796 |
T |
|
| Q |
515 |
attttcaaataagtttgaacgtttgtcaaacctttggatgagacgaatgtgaccattttcgttctcaaagagtgtttggaacctgttaga |
604 |
Q |
| |
|
||| ||||||| || |||||||||||||||||||||| || |||||||||||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
30313795 |
attctcaaatattttggaacgtttgtcaaacctttggagaagccgaatgtgaccattttcgttctcaaaaagagtttgaaacctgttaga |
30313706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 415 - 595
Target Start/End: Complemental strand, 30297845 - 30297665
Alignment:
| Q |
415 |
taccactaaggactacaaggatgaagtcggcatcagtgtggtgggggaggaagatggtgtggggttttgctctgtactccaaaagacggtagttttttaa |
514 |
Q |
| |
|
|||||||||| ||| ||||||||||||| |||||| |||| || || || |||| ||||| ||||| | || |||||||| || ||||||| | |
|
|
| T |
30297845 |
taccactaagcactgcaaggatgaagtcagcatcattgtgttgtggaagaaagagagtgtgaggtttggagtgatattccaaaaggcgatagttttgaag |
30297746 |
T |
|
| Q |
515 |
attttcaaataagtttgaacgtttgtcaaacctttggatgagacgaatgtgaccattttcgttctcaaagagtgtttggaa |
595 |
Q |
| |
|
||| ||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
30297745 |
attctcaaatattttggaacgtttgtcaaacctttggaggagacgaatgtgaccattttcgttctcaaaaagagtttggaa |
30297665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 415 - 595
Target Start/End: Complemental strand, 30303031 - 30302851
Alignment:
| Q |
415 |
taccactaaggactacaaggatgaagtcggcatcagtgtggtgggggaggaagatggtgtggggttttgctctgtactccaaaagacggtagttttttaa |
514 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||| |||| || || || |||| ||||| ||||| | ||| |||||||| || ||||||| | |
|
|
| T |
30303031 |
taccactaaggactgcaaggatgaagtcagcatcattgtgttgtggaagaaagagagtgtgaggtttggagtggtattccaaaaggcgatagttttggag |
30302932 |
T |
|
| Q |
515 |
attttcaaataagtttgaacgtttgtcaaacctttggatgagacgaatgtgaccattttcgttctcaaagagtgtttggaa |
595 |
Q |
| |
|
||| ||||||| |||||||||||||| |||||||| | ||||||||||||||||||||| || ||||| || |||||||| |
|
|
| T |
30302931 |
attctcaaatatttttgaacgtttgtcgaacctttgaaggagacgaatgtgaccattttcattttcaaaaagagtttggaa |
30302851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 415 - 595
Target Start/End: Complemental strand, 30290345 - 30290165
Alignment:
| Q |
415 |
taccactaaggactacaaggatgaagtcggcatcagtgtggtgggggaggaagatggtgtggggttttgctctgtactccaaaagacggtagttttttaa |
514 |
Q |
| |
|
|||||||||| ||| ||||||| ||||| |||||| |||| || || || |||| |||||| ||||| | || ||||||||||||||||||| | |
|
|
| T |
30290345 |
taccactaagcactgcaaggataaagtcagcatcattgtgttgtggaagaaagagggtgtgaggtttggagtgatattccaaaagacggtagttttggag |
30290246 |
T |
|
| Q |
515 |
attttcaaataagtttgaacgtttgtcaaacctttggatgagacgaatgtgaccattttcgttctcaaagagtgtttggaa |
595 |
Q |
| |
|
||||||||||| || || |||||||| || ||||| | |||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
30290245 |
attttcaaatattttggagcgtttgtcgaatctttgaaggagacgaatgtgaccattttcgttttcaaaaagagtttggaa |
30290165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 94 - 281
Target Start/End: Complemental strand, 30298170 - 30297983
Alignment:
| Q |
94 |
atattacctgaaatttaccaggcctattaacaggtatgacgagatctactactctaagatcctcatcattgtcttggttaactagataagcagtcgagcc |
193 |
Q |
| |
|
||||||||||||||||||| || || ||||| || ||| | ||||||| ||||||||||||||||| | ||| ||||| | | ||||||| | ||| |
|
|
| T |
30298170 |
atattacctgaaatttaccgggtctgttaacggggatggcaagatctaatactctaagatcctcattgtcatctcggttagccaaataagcaatgctgcc |
30298071 |
T |
|
| Q |
194 |
cgcagggagtttaatagtatcaccttgctcaaggttaaacgagtttctattgttggaatttaacacagtaagtatggctttccctgca |
281 |
Q |
| |
|
||||||||||| ||||||||||| | |||||||| || |||||||| |||| | || ||||| || |||||||||||||||||| |
|
|
| T |
30298070 |
ggcagggagtttgatagtatcaccgcgttcaaggttgaaggagtttctgttgtctgggttcaacacggtgagtatggctttccctgca |
30297983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 30285600 - 30285514
Alignment:
| Q |
195 |
gcagggagtttaatagtatcaccttgctcaaggttaaacgagtttctattgttggaatttaacacagtaagtatggctttccctgca |
281 |
Q |
| |
|
||||||||||| || |||||||| |||||||||| || |||||||||||||||| || ||||| || |||||||||||||||||| |
|
|
| T |
30285600 |
gcagggagtttgatggtatcaccacgctcaaggttgaaggagtttctattgttggggttcaacaccgtcagtatggctttccctgca |
30285514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 281
Target Start/End: Complemental strand, 30303354 - 30303167
Alignment:
| Q |
94 |
atattacctgaaatttaccaggcctattaacaggtatgacgagatctactactctaagatcctcatcattgtcttggttaactagataagcagtcgagcc |
193 |
Q |
| |
|
||||||||||||||| ||| || || |||||||| ||| | ||||||| ||||||||| |||| | | ||| ||||| | | ||||||| | ||| |
|
|
| T |
30303354 |
atattacctgaaattgaccgggtctgttaacagggatggcaagatctaatactctaaggtcctggttgtcatctcggttagccaaataagcaatgctgcc |
30303255 |
T |
|
| Q |
194 |
cgcagggagtttaatagtatcaccttgctcaaggttaaacgagtttctattgttggaatttaacacagtaagtatggctttccctgca |
281 |
Q |
| |
|
||||||||||| || |||||||| | |||||||| || |||||||||||||| | || ||||| || |||||||||||||||||| |
|
|
| T |
30303254 |
ggcagggagtttgatggtatcaccacgttcaaggttgaaggagtttctattgtttgggttcaacaccgtgagtatggctttccctgca |
30303167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 281
Target Start/End: Complemental strand, 30314223 - 30314036
Alignment:
| Q |
94 |
atattacctgaaatttaccaggcctattaacaggtatgacgagatctactactctaagatcctcatcattgtcttggttaactagataagcagtcgagcc |
193 |
Q |
| |
|
||||||||||||||| ||| || || |||||||| ||| | ||||||| ||||||||| |||| | | ||| ||||| | | ||||||| | ||| |
|
|
| T |
30314223 |
atattacctgaaattgaccgggtctgttaacagggatggcaagatctaatactctaaggtcctggttgtcatctcggttagccaaataagcaatgctgcc |
30314124 |
T |
|
| Q |
194 |
cgcagggagtttaatagtatcaccttgctcaaggttaaacgagtttctattgttggaatttaacacagtaagtatggctttccctgca |
281 |
Q |
| |
|
||||||||||| || |||||||| | |||||||| || |||||||||||||| | || ||||| || |||||||||||||||||| |
|
|
| T |
30314123 |
agcagggagtttgatggtatcaccacgttcaaggttgaaggagtttctattgtttgggttcaacaccgtgagtatggctttccctgca |
30314036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 30285705 - 30285639
Alignment:
| Q |
90 |
atatatattacctgaaatttaccaggcctattaacaggtatgacgagatctactactctaagatcct |
156 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||||| || ||| | ||||||| ||||||||||||| |
|
|
| T |
30285705 |
atatatattacctgaaattgaccgggcctgttaacggggatggcaagatctaagactctaagatcct |
30285639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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