View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048R-Insertion-9 (Length: 209)
Name: NF3048R-Insertion-9
Description: NF3048R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048R-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 45700136 - 45699937
Alignment:
| Q |
9 |
aatattacattctcttattaataggcaagtgcaattgttttaatggctccatgataaacttccattcgaacctatcatatgttttctgaataatataatt |
108 |
Q |
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| T |
45700136 |
aatattacattctcttattaataggcaagtgcaattgttctaatggctccatgataaacttccattcgaacctatcatatgttttctgaataatataatt |
45700037 |
T |
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| Q |
109 |
gaatatcttcctcaacatgtcaccttcctatgaactcacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgag |
208 |
Q |
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| T |
45700036 |
gaatatcttcctcaacatgtcaccttattatgaactcacttgtgttggcctattggtattgatttgggacttgagagtgtgctcctccttaaagtttgag |
45699937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 21549209 - 21549151
Alignment:
| Q |
145 |
cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagt |
203 |
Q |
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| T |
21549209 |
cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctccttaaagt |
21549151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 18546427 - 18546382
Alignment:
| Q |
152 |
gttggcctattgatattgatttgggacctgagagcgtgctcctcct |
197 |
Q |
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| T |
18546427 |
gttggtctagtggtattgatttgggacctgagagcatgctcctcct |
18546382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 18897158 - 18897222
Alignment:
| Q |
133 |
ttcctatgaactcacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctcct |
197 |
Q |
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| T |
18897158 |
ttcctataaacccacttgggttggcctagtggtgttggtttgggaccttagagtgtgctcctcct |
18897222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 19703559 - 19703507
Alignment:
| Q |
145 |
cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctcct |
197 |
Q |
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| T |
19703559 |
cacttgggttggcctagtggtattggcttgggacctgagagtgtgctcctcct |
19703507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 21877814 - 21877867
Alignment:
| Q |
147 |
cttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaa |
200 |
Q |
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| T |
21877814 |
cttgagttggcctagtggtattgacttgggacctgggagggtgctcctccttaa |
21877867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 23552122 - 23552174
Alignment:
| Q |
145 |
cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctcct |
197 |
Q |
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| T |
23552122 |
cacttgggttggcctagtgctattgacttgggacctgggagtgtgctcctcct |
23552174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 29503275 - 29503327
Alignment:
| Q |
145 |
cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctcct |
197 |
Q |
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| T |
29503275 |
cacttgggttggcctagtggtattggtttgggacctgggagtgtgctcctcct |
29503327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 33962856 - 33962804
Alignment:
| Q |
145 |
cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctcct |
197 |
Q |
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| T |
33962856 |
cacttgggttggcctaatgatattggtttgggaactgggagtgtgctcctcct |
33962804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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