View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_high_16 (Length: 392)
Name: NF3048_high_16
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 9e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 191 - 382
Target Start/End: Original strand, 40586110 - 40586301
Alignment:
| Q |
191 |
gagttacacccaaatttaacacatatagatcannnnnnnnccctttcctattacaaattaaaactaaatttcttgtcaactaactcaagaataccaatgt |
290 |
Q |
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| T |
40586110 |
gagttacacccaaatttaacacatatagaacattttttttccctttcctattacaaattaaaactaaatttcttgtcaactaactcaagaataccaatgt |
40586209 |
T |
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| Q |
291 |
cagcattatcatgatcttcaatggctatattcagatccaaagagaggtttagattactttgatgatcctctatcatggtctctttccctttg |
382 |
Q |
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| T |
40586210 |
cagcattatcatgatcttcaatggcgatatttagatccaaagagaggtttagattactttgatgatcctctatcatggtctctttccctttg |
40586301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 40585931 - 40586082
Alignment:
| Q |
18 |
caagcttatcatataccatctccatccaagattgaaaaatacatgcatatcaacttgaattatcaaattatatatctaaaagtttgcattcatgtcttgn |
117 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40585931 |
caagcttatcatataccatctccatccaagattaaaaaatacatgcatatcaacttgaattatcaaactatatatctaaaagtttgcattcatgtctttt |
40586030 |
T |
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| Q |
118 |
nnnnnnnctttccccactaataactatagctgaaaaacaaacaagttgagag |
169 |
Q |
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| T |
40586031 |
tttttttctttccccactaataactatagctgaaaaacaaacaagttgagag |
40586082 |
T |
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