View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_high_17 (Length: 390)
Name: NF3048_high_17
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 37 - 362
Target Start/End: Original strand, 1844926 - 1845251
Alignment:
| Q |
37 |
gtgattactaattgtagccctcagctgtgattctaggagatgttgcaagtattccagcattgtttattagtatttgtaccaagcagtgcaaatcggaatt |
136 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1844926 |
gtgattactaatcgtagccctcagttgtgattctaggagatgttgcaagtattccagcattgtttattagtatttgtaccaagcagtgcagatcggaatt |
1845025 |
T |
|
| Q |
137 |
caaaagccactgccgcagggaagtactgaactttataattgactcaaccgacgaaaggtcagcctgaaaagctttgaggtgaacatcttcattccaacct |
236 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1845026 |
caaaagccattgccgcacggaagtactgaactttataattgactcaaccgacgaaaggtcagcctgaaaagctttgaggtgaacatcttcattccaacct |
1845125 |
T |
|
| Q |
237 |
ttaatctttgttatggcctatcaaacaacttgaagaacacgattaagagattcacaatgcatggaatcaccattaccatgatgctaataattaatataga |
336 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1845126 |
ttaatctttgttatggtctatcaaacaacttgaagaacacgattaagagattcacaatgcatggaatcaccattaccatgatgctaataattaatataga |
1845225 |
T |
|
| Q |
337 |
caaatacctctattattggatacact |
362 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
1845226 |
caaatacctctattattggatacact |
1845251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 40 - 347
Target Start/End: Complemental strand, 1838304 - 1837998
Alignment:
| Q |
40 |
attactaattgtagccctcagctgtgattctaggagatgttgcaagtattccagcattgtttattagtatttgtaccaagcagtgcaaatcggaattcaa |
139 |
Q |
| |
|
|||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
1838304 |
attacttatcgtagccctcagttgtgactctaggagatgttgcaagtattccagcattgtttattagtatttgtaccgagcagtgcaaatcggaatccaa |
1838205 |
T |
|
| Q |
140 |
aagccactgccgcagggaagtactgaactttataattgactcaaccgacgaaaggtcagcctgaaaagctttgaggtgaacatcttcattccaaccttta |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
1838204 |
aagccactgccgcagggaagtactgaactttataattgactcaaccgacgaaaggtcagcctgaaaagctttgaggtgggcatcctcattccaaccttta |
1838105 |
T |
|
| Q |
240 |
atctttgttatggcctatcaaacaacttgaagaacacgattaagagattcacaatgcatggaatcaccattaccatgatgctaataattaatatagacaa |
339 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || || |
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|
| T |
1838104 |
atctttgttatggcctatcaaacaacgggaagaacacgattaagatcttcacaatgcatggaatcatcattaccatgatgctaataattaatattga-aa |
1838006 |
T |
|
| Q |
340 |
atacctct |
347 |
Q |
| |
|
|||||||| |
|
|
| T |
1838005 |
atacctct |
1837998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 40 - 282
Target Start/End: Original strand, 41382220 - 41382462
Alignment:
| Q |
40 |
attactaattgtagccctcagctgtgattctaggagatgttgcaagtattccagcattgtttattagtatttgtaccaagcagtgcaaatcggaattcaa |
139 |
Q |
| |
|
|||||| || ||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| ||| |
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|
| T |
41382220 |
attactgatcgtagccctcagctgtgactctaagagatgtggcaagtattccagcattgtttattagtatctgtaccgagcagtgcaaatcagaatccaa |
41382319 |
T |
|
| Q |
140 |
aagccactgccgcagggaagtactgaactttataattgactcaaccgacgaaaggtcagcctgaaaagctttgaggtgaacatcttcattccaaccttta |
239 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||| |
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|
| T |
41382320 |
aagccactgccgcaaggaagtactgaactttataattgactcaaccgacgaaaggtcagcctaaaaagctttgaggtgggcatcctcattccaaccttta |
41382419 |
T |
|
| Q |
240 |
atctttgttatggcctatcaaacaacttgaagaacacgattaa |
282 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||| ||||| |
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|
| T |
41382420 |
atctttgttatggtctatcaaacaacgggaagaacacaattaa |
41382462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 41383823 - 41383892
Alignment:
| Q |
278 |
attaagagattcacaatgcatggaatcaccattaccatgatgctaataattaatatagacaaatacctct |
347 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||||| |||||||||| |
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|
| T |
41383823 |
attaagatattcacaatgcatggaatcatcattaccatgatgcttataactaatatagaaaaatacctct |
41383892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 37 - 347
Target Start/End: Complemental strand, 18632983 - 18632673
Alignment:
| Q |
37 |
gtgattactaattgtagccctcagctgtgattctaggagatgttgcaagtattccagcattgtttattagtatttgtaccaagcagtgcaaatcggaatt |
136 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
18632983 |
gtgattactaatcttagccctcagctgtgattctaggagatgttgcaagtattccagcattgtatattagtatttgtaccgagcagtgcaaatcggaatc |
18632884 |
T |
|
| Q |
137 |
caaaagccactgccgcagggaagtactgaactttataattgactcaaccgacgaaaggtcagcctgaaaagctttgaggtgaacatcttcattccaacct |
236 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
18632883 |
caaaaaccactgccgtagggaagtactgaactttataattgactccaccgacaaaaggtcagtctgaaaagctttgaggtgaacatcttcattccaacct |
18632784 |
T |
|
| Q |
237 |
ttaatctttgttatggcctatcaaacaacttgaagaacacgattaagagattcacaatgcatggaatcaccattaccatgatgctaataattaatataga |
336 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
18632783 |
ttaatctttgttatggcctatcgaacaacttgaagaacacgattacgagatttacaatgcaaggaatcaccattaccatgatgctaataattaatataga |
18632684 |
T |
|
| Q |
337 |
caaatacctct |
347 |
Q |
| |
|
||||||||||| |
|
|
| T |
18632683 |
caaatacctct |
18632673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 40 - 347
Target Start/End: Original strand, 18639096 - 18639402
Alignment:
| Q |
40 |
attactaattgtagccctcagctgtgattctaggagatgttgcaagtattccagcattgtttattagtatttgtaccaagcagtgcaaatcggaattcaa |
139 |
Q |
| |
|
|||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
18639096 |
attacttatcgtagccctcagttgtgactctaggagatgttgcaagtattccagcattgtttattagtatttgtaccgagcagtgcaaatcggaatccaa |
18639195 |
T |
|
| Q |
140 |
aagccactgccgcagggaagtactgaactttataattgactcaaccgacgaaaggtcagcctgaaaagctttgaggtgaacatcttcattccaaccttta |
239 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| |
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|
| T |
18639196 |
aagccattgccgcagggaagtaccgaactttataattgactcagccgacgaaatatcagcctgaaaagctttgaggtgggcatcctcattccaaccttta |
18639295 |
T |
|
| Q |
240 |
atctttgttatggcctatcaaacaacttgaagaacacgattaagagattcacaatgcatggaatcaccattaccatgatgctaataattaatatagacaa |
339 |
Q |
| |
|
|||||| |||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || || |
|
|
| T |
18639296 |
atcttttttatggtctatcaaacaacgggaagaacacgattaagatcttcacaatgcatggaatcatcattaccatgatgctaataattaatattga-aa |
18639394 |
T |
|
| Q |
340 |
atacctct |
347 |
Q |
| |
|
|||||||| |
|
|
| T |
18639395 |
atacctct |
18639402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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