View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_high_24 (Length: 296)
Name: NF3048_high_24
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 48924044 - 48924204
Alignment:
| Q |
11 |
cacagaacttcactttcagcattcaaaaaacaacaaacatagctttaatattctaaatatgtgaatatatggaaaatggatgtcggatgtccattgggag |
110 |
Q |
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| T |
48924044 |
cacagaacttcactttcagcattcaaaaaacaacaaacatagctttaatattctaaatatgtgaatatatggaaaatggatgtcggatgtccattgggag |
48924143 |
T |
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| Q |
111 |
tgaattaccatcgaaaataagtctaataataataatatcattcatttatgttttgaagaca |
171 |
Q |
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| T |
48924144 |
tgaattaccatcgaaaataagtctaataataataatatcattcatttatgttttgaagaca |
48924204 |
T |
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Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 185 - 277
Target Start/End: Original strand, 48924188 - 48924278
Alignment:
| Q |
185 |
tttatgttttgaagacaatctcagaggttagaaattagacattttttatcaaacacctaacatacaattcagaaaaggatgcaacgatacatc |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48924188 |
tttatgttttgaagacaatctcagaggttagaaattagacatttt--atcaaacacctaacatacaattcagaaaaggatgcaacgatacatc |
48924278 |
T |
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