View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_high_26 (Length: 288)
Name: NF3048_high_26
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_high_26 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 32055225 - 32055484
Alignment:
| Q |
8 |
tgagatgaagacacattgatcgttttggagtaaatacaaacaaaacatgataatacaagataaaattgtattagataatccacgataatgaatacttgac |
107 |
Q |
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| T |
32055225 |
tgagaagaagacacattgatcgttttgggataaatacaaacaaaacataataatacaaaataaaattgtattagataatccacgttaatgaatacttgac |
32055324 |
T |
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| Q |
108 |
cacttgacgcacaatgtgtatgcaaatttaaaagtgtcccagccttatatatgttacatgaaaatccaaacaaattacaataacattcattattttccaa |
207 |
Q |
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| T |
32055325 |
cacttgacgcacaatgtgtatgcaaatttaaaagggtcccggccttatatatgttacatgaaaatccaaacaaattacaataa----cattattttccaa |
32055420 |
T |
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| Q |
208 |
agggtttttcttaacctccctttgaaatttttatgggatcctaatgaaaagcagaggaactaag |
271 |
Q |
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| T |
32055421 |
agagtttttcttaacctccctttgaaatttttatgggatcctaatgaaaagcacaggaactaag |
32055484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 258
Target Start/End: Original strand, 20996249 - 20996452
Alignment:
| Q |
41 |
atacaaacaaaacatgataatacaagataaaattgtattagataatccacgataatgaatacttgaccacttgacgcacaatgtgtatgcaaatttaaaa |
140 |
Q |
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| T |
20996249 |
atacaaacaaaacatgataataaaatataaaattgtattgcataatccacattaatgaatacatttcc---tg-----caatgt-tcttcaaattcaaag |
20996339 |
T |
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| Q |
141 |
gtgtcccagccttatatatgttacatgaaaatccaaacaaattacaataacattcattattttccaaagggtttttcttaacctccctttgaaattttta |
240 |
Q |
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| T |
20996340 |
gagtcctagtcttagatatgttacataaaaatacaaacaaattacaataacgtt----atcttacaaagtgtttttcttaacctccctttccagttttta |
20996435 |
T |
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| Q |
241 |
tgggatcctaatgaaaag |
258 |
Q |
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| T |
20996436 |
tggggt-ctaatgaaaag |
20996452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 59 - 258
Target Start/End: Original strand, 8085937 - 8086123
Alignment:
| Q |
59 |
aatacaagataaaattgtattagataatccacgataatgaatacttgaccacttgacgcacaatgtgtatgcaaatttaaaagtgtcccagccttatata |
158 |
Q |
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| T |
8085937 |
aatacaagataaaattatattagataatccacattaatgaataatttaca---tg-----caatgtatatgcaaatttaaaaggatcctagtcttacata |
8086028 |
T |
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| Q |
159 |
tgttacatgaaaatccaaacaaattacaataacattcattattttccaaagggtttttcttaacctccctttgaaatttttatgggatcctaatgaaaag |
258 |
Q |
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| T |
8086029 |
tgttacatgaaaatccaaacaaattagaataacatc----attttccagaatgtatttcttatcctccctttcaaatttttatggg-tcctaatgaaaag |
8086123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 119 - 257
Target Start/End: Complemental strand, 30333218 - 30333085
Alignment:
| Q |
119 |
caatgtgtatgcaaatttaaaagtgtcccagccttatatatgttacatgaaaatccaaacaaattacaataacattcattattttccaaagggtttttct |
218 |
Q |
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||||||||||| |||||| ||| |||| || |||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||| |||||| | |
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| T |
30333218 |
caatgtgtatgataatttataagggtcctagtcttaaatatgttacatgaaaatccaaacaaattacaataa----catcgttttctaaagtgttttt-t |
30333124 |
T |
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| Q |
219 |
taacctccctttgaaatttttatgggatcctaatgaaaa |
257 |
Q |
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| T |
30333123 |
taacttcccttttaaatttttaaggggtcctaatgaaaa |
30333085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 7580925 - 7580976
Alignment:
| Q |
36 |
agtaaatacaaacaaaacatgataatacaagataaaattgtattagataatc |
87 |
Q |
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| T |
7580925 |
agtaaatacaaacaaaacatgataacataagataaaatcgtattagataatc |
7580976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 26511427 - 26511347
Alignment:
| Q |
177 |
acaaattacaataacattcattattttccaaagggtttttcttaacctccctttgaaatttttatgggatcctaatgaaaag |
258 |
Q |
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||||||||||||||||| |||| | |||| || ||||||||||||||| |||| |||||||||||| ||||||||||||| |
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| T |
26511427 |
acaaattacaataacat-cattttcatccatagtgtttttcttaacctctctttcaaatttttatggcgtcctaatgaaaag |
26511347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 26511533 - 26511481
Alignment:
| Q |
38 |
taaatacaaacaaaacatgataatacaagataaaattgtattagataatccac |
90 |
Q |
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||||||||| |||||||||||||||||||||||||||| || | ||||||||| |
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| T |
26511533 |
taaatacaaccaaaacatgataatacaagataaaattgaataatataatccac |
26511481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 19828276 - 19828221
Alignment:
| Q |
49 |
aaaacatgataatacaagataaaatt---gtattagataatccacgataatgaata |
101 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
19828276 |
aaaacatgataatacaagataaaattgtagtattagataatccacattaatgaata |
19828221 |
T |
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