View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_high_27 (Length: 282)
Name: NF3048_high_27
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_high_27 |
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| [»] scaffold0432 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 22 - 259
Target Start/End: Original strand, 9828722 - 9828958
Alignment:
| Q |
22 |
tgacttgctagaggtgacttcacaactagatacatcaaaatcatcaacaataaaacctttcgagtttctttcctcactttgttgataagtcctctattga |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
9828722 |
tgacttgctagaggtgacttcacaactagatacatcaaaatcatcaacaataaaacctttcgagtttccttcctcactttgt-gataagtcctctattga |
9828820 |
T |
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| Q |
122 |
ttcagcatcatcatttgttggaatactttgctgatagttgaccttatcatcatgacttttggttacacattttcttagaggccttcgacggcggcgccta |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9828821 |
ttcagcatcatcatttgttggaatactttgctgatagttgaccttatcatcatgacttttggttacacattttcttagaggccttcgacggcggcgccta |
9828920 |
T |
|
| Q |
222 |
ctctcttccttcctccttacaagttgactaatcagcat |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
9828921 |
ctctcttccttcctccttacaagttgactaatcagcat |
9828958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 9755247 - 9755481
Alignment:
| Q |
22 |
tgacttgctagaggtgacttcacaactagatacatcaaaatcatcaacaataaaacctttcgagtttctttcctcactttgttgataagtcctctattga |
121 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||| |
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| T |
9755247 |
tgacttgctagaggtgacttcacaaccagataaatcaaaatcatcaacaataaaacctttcaagtttccttcctcactttgt-gataagtcctctattga |
9755345 |
T |
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| Q |
122 |
ttcagcatcatcatttgttggaatactttgctgatagttgaccttatcatcatgacttttggttacacattttcttagaggccttcgacggcggcgccta |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9755346 |
ttcagcatcatcatttgttggaatactttgctgatagttgaccttatcatcatgacttttggttacacattttcttagaggccttcgacggcggcgccta |
9755445 |
T |
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| Q |
222 |
ctctcttccttcctccttacaagttgactaatcagc |
257 |
Q |
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| T |
9755446 |
ctctcttccttcctccttacaagttgactaatcagc |
9755481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 193
Target Start/End: Original strand, 9803885 - 9804065
Alignment:
| Q |
27 |
tgctagaggtgacttcacaactagatacatcaaaatcatcaacaataaaacctttcgagtttctttcctcactttgttgataagtcctctattgattcag |
126 |
Q |
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||||||||||||||| |||||||||||||||||||||||| || |||||| || | |||||| ||| || |||||| |||||||||||||||||| || |
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| T |
9803885 |
tgctagaggtgacttgacaactagatacatcaaaatcatcgacgataaaatctataaagtttccttcttcgctttgt-gataagtcctctattgatccat |
9803983 |
T |
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| Q |
127 |
catcat---------------catttgttggaatactttgctgatagttgaccttatcatcatgacttttggttacacattt |
193 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |
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| T |
9803984 |
aatcattatcatgagcctcttcatttgttggaatactttgctgatagttgaccttatcaccatgaattttgcttacacattt |
9804065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 9708599 - 9708640
Alignment:
| Q |
127 |
catcatcatttgttggaatactttgctgatagttgaccttat |
168 |
Q |
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| T |
9708599 |
catcatcattttttggaatactctgctgatacttgaccttat |
9708640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 9755892 - 9755952
Alignment:
| Q |
39 |
cttcacaactagatacatcaaaatcatcaacaataaaacctttcgagtttctttcctcact |
99 |
Q |
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|||||||| |||| ||||||||||||||||||||||| | ||| ||||| ||||||||| |
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| T |
9755892 |
cttcacaatcagatgcatcaaaatcatcaacaataaaatcattcatgtttccttcctcact |
9755952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 132
Target Start/End: Original strand, 7210 - 7319
Alignment:
| Q |
22 |
tgacttgctagaggtgacttcacaactagatacatcaaaatcatcaacaataaaacctttcgagtttctttcctcactttgttgataagtcctctattga |
121 |
Q |
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|||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||| |||||| ||| |||||||| |||||||||||||||||| |
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| T |
7210 |
tgacttgctagaggcgacttcacagctagatatatcaaaatcatcaacaataaaacctttcaagtttccttcttcactttg-tgataagtcctctattga |
7308 |
T |
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| Q |
122 |
ttcagcatcat |
132 |
Q |
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| T |
7309 |
tccagcatcat |
7319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 7334 - 7368
Alignment:
| Q |
132 |
tcatttgttggaatactttgctgatagttgacctt |
166 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
7334 |
tcatttgttggaatactttgatgatagttgacctt |
7368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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