View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3048_high_3 (Length: 529)
Name: NF3048_high_3
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_high_3 |
 | |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 12 - 509
Target Start/End: Original strand, 26652085 - 26652575
Alignment:
| Q |
12 |
gcagagattatggttcacatcattgccnnnnnnn-tgtgtttggtttgggactcttacaagatagacttcctaaccggctcgattgtgaggattccctat |
110 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26652085 |
gcagagattatggttcacatcattgccaaaaaaaatgtgtttggtttgggactcttacaagatagacttcataaccggctcgattgtgaggattccctat |
26652184 |
T |
|
| Q |
111 |
ggacattccttgatgtgatccctcaaacttttgatctcggtcaaatgtttgcagttccactcaatgacgcattggcagaaacatcacatcacccgacctt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26652185 |
ggacattccttgatgtgatccctcaaacttttgatctcagtcaaatgttcgcagttccgctcaatgacgcattggcagaaacatcacatcacccgacctt |
26652284 |
T |
|
| Q |
211 |
cagcttcaatatccctggcacaaacaaaatgtattgttgtctctcatgttgtatgagtgacattcatggcactctttgtcagctatggagattggagacc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
26652285 |
cagcttcaatatccctggcacaaacaaaatgtattgttgtctctcgtgttgtatgagtgacatccatggcactctttgtcagcta-------tggagacc |
26652377 |
T |
|
| Q |
311 |
attgcaaataggaaataagagtaggaaatggatgaatactgttcttttggtggtcacagagtatcgtttgggcacaaacacaatgtattgtttgtccttg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
26652378 |
attgcaaataggaaataagagtaggaaatggatgaatactgttcttttggtggtcacagagtatcgtttgggcacaaacaaaatgtattgtttgtccttg |
26652477 |
T |
|
| Q |
411 |
cagcattttcaaccagtaaattttctttcgtcagaatttgttcccgttattattcctataatttaatgtcaagttgagcgttcatcatgttttggtttc |
509 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26652478 |
cagca-tttcaaccagtaaattttctttcgtcacaatttgttcccgatattattcctataatttaatgtcaagttgtgcgttcatcatgttttggtttc |
26652575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 12 - 509
Target Start/End: Original strand, 26758053 - 26758543
Alignment:
| Q |
12 |
gcagagattatggttcacatcattgccnnnnnnn-tgtgtttggtttgggactcttacaagatagacttcctaaccggctcgattgtgaggattccctat |
110 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26758053 |
gcagagattatggttcacatcattgccaaaaaaaatgtgtttggtttgggactcttacaagatagacttcataaccggctcgattgtgaggattccctat |
26758152 |
T |
|
| Q |
111 |
ggacattccttgatgtgatccctcaaacttttgatctcggtcaaatgtttgcagttccactcaatgacgcattggcagaaacatcacatcacccgacctt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26758153 |
ggacattccttgatgtgatccctcaaacttttgatctcagtcaaatgttcgcagttccgctcaatgacgcattggcagaaacatcacatcacccgacctt |
26758252 |
T |
|
| Q |
211 |
cagcttcaatatccctggcacaaacaaaatgtattgttgtctctcatgttgtatgagtgacattcatggcactctttgtcagctatggagattggagacc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
26758253 |
cagcttcaatatccctggcacaaacaaaatgtattgttgtctctcgtgttgtatgagtgacatccatggcactctttgtcagcta-------tggagacc |
26758345 |
T |
|
| Q |
311 |
attgcaaataggaaataagagtaggaaatggatgaatactgttcttttggtggtcacagagtatcgtttgggcacaaacacaatgtattgtttgtccttg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
26758346 |
attgcaaataggaaataagagtaggaaatggatgaatactgttcttttggtggtcacagagtatcgtttgggcacaaacaaaatgtattgtttgtccttg |
26758445 |
T |
|
| Q |
411 |
cagcattttcaaccagtaaattttctttcgtcagaatttgttcccgttattattcctataatttaatgtcaagttgagcgttcatcatgttttggtttc |
509 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
26758446 |
cagca-tttcaaccagtaaattttctttcgtcacaatttgttcccgatattattcctataatttaatgtcaagttgtgcgttcatcatgttttggtttc |
26758543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 46 - 228
Target Start/End: Complemental strand, 27421287 - 27421105
Alignment:
| Q |
46 |
tgtgtttggtttgggactcttacaagatagacttcctaaccggctcgattgtgaggattccctatggacattccttgatgtgatccctcaaacttttgat |
145 |
Q |
| |
|
||||| ||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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|
| T |
27421287 |
tgtgtatggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatggacattccttgacacgatccctcaaactttcaat |
27421188 |
T |
|
| Q |
146 |
ctcggtcaaatgtttgcagttccactcaatgacgcattggcagaaacatcacatcacccgaccttcagcttcaatatccctgg |
228 |
Q |
| |
|
| |||||||||||| | ||| |||| |||| || |||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
27421187 |
cccggtcaaatgttcacctttctgctcactgacacaatggcagaaacatcacaacacccgaccttcagcttcaatatccctgg |
27421105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 310 - 438
Target Start/End: Complemental strand, 27420943 - 27420814
Alignment:
| Q |
310 |
cattgcaaataggaaataagagtaggaaatggatgaatactgttcttttggtggtcaca-gagtatcgtttgggcacaaacacaatgtattgtttgtcct |
408 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
27420943 |
cattgcatataggaaataagagtaggaaatggatgaacactgttcttttcgtgatcacatgagtatcgtttgggcacagtcacaatgtattgtttgtcct |
27420844 |
T |
|
| Q |
409 |
tgcagcattttcaaccagtaaattttcttt |
438 |
Q |
| |
|
||| ||||||||||||||||||||| |||| |
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|
| T |
27420843 |
tgctgcattttcaaccagtaaatttgcttt |
27420814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 31289892 - 31289975
Alignment:
| Q |
143 |
gatctcggtcaaatgtttgcagttccactcaatgacgcattggcagaaacatcacatcacccgaccttcagcttcaatatccct |
226 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
31289892 |
gatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccct |
31289975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 31289817 - 31289885
Alignment:
| Q |
46 |
tgtgtttggtttgggactcttacaagatagacttcctaaccggctcgattgtgaggattccctatggac |
114 |
Q |
| |
|
||||||| || || |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31289817 |
tgtgtttagtatgagacttttacgagatagacttcctaaccggctcgattgtgaggattccctatggac |
31289885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 101 - 228
Target Start/End: Original strand, 26632715 - 26632842
Alignment:
| Q |
101 |
gattccctatggacattccttgatgtgatccctcaaacttttgatctcggtcaaatgtttgcagttccactcaatgacgcattggcagaaacatcacatc |
200 |
Q |
| |
|
|||| |||||||||||||||||| |||||| |||| ||| ||| ||||||||| || | |||||| ||| ||| ||| ||| ||||||||||| | |
|
|
| T |
26632715 |
gatttcctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactgatgcagtggtggaaacatcacaac |
26632814 |
T |
|
| Q |
201 |
acccgaccttcagcttcaatatccctgg |
228 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
26632815 |
acccgaccttcagcttcagtatccctgg |
26632842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 101 - 228
Target Start/End: Original strand, 26738691 - 26738818
Alignment:
| Q |
101 |
gattccctatggacattccttgatgtgatccctcaaacttttgatctcggtcaaatgtttgcagttccactcaatgacgcattggcagaaacatcacatc |
200 |
Q |
| |
|
|||| |||||||||||||||||| |||||| |||| ||| ||| ||||||||| || | |||||| ||| ||| ||| ||| ||||||||||| | |
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|
| T |
26738691 |
gatttcctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactgatgcagtggtggaaacatcacaac |
26738790 |
T |
|
| Q |
201 |
acccgaccttcagcttcaatatccctgg |
228 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
26738791 |
acccgaccttcagcttcagtatccctgg |
26738818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 46 - 228
Target Start/End: Original strand, 66076 - 66258
Alignment:
| Q |
46 |
tgtgtttggtttgggactcttacaagatagacttcctaaccggctcgattgtgaggattccctatggacattccttgatgtgatccctcaaacttttgat |
145 |
Q |
| |
|
||||| ||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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|
| T |
66076 |
tgtgtatggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatggacattccttgacacgatccctcaaactttcaat |
66175 |
T |
|
| Q |
146 |
ctcggtcaaatgtttgcagttccactcaatgacgcattggcagaaacatcacatcacccgaccttcagcttcaatatccctgg |
228 |
Q |
| |
|
| |||||||||||| | ||| |||| |||| || |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
66176 |
cccggtcaaatgttcacctttctgctcactgacacaatggcagaaacatcacaacacccgaccttcagcttcaatatccctgg |
66258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 310 - 438
Target Start/End: Original strand, 66420 - 66549
Alignment:
| Q |
310 |
cattgcaaataggaaataagagtaggaaatggatgaatactgttcttttggtggtcaca-gagtatcgtttgggcacaaacacaatgtattgtttgtcct |
408 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
66420 |
cattgcatataggaaataagagtaggaaatggatgaacactgttcttttcgtgatcacatgagtatcgtttgggcacagtcacaatgtattgtttgtcct |
66519 |
T |
|
| Q |
409 |
tgcagcattttcaaccagtaaattttcttt |
438 |
Q |
| |
|
||| ||||||||||||||||||||| |||| |
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|
| T |
66520 |
tgctgcattttcaaccagtaaatttgcttt |
66549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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