View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3048_high_31 (Length: 274)

Name: NF3048_high_31
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3048_high_31
NF3048_high_31
[»] chr3 (33 HSPs)
chr3 (20-264)||(32677610-32677854)
chr3 (120-264)||(18996967-18997111)
chr3 (120-264)||(18999506-18999650)
chr3 (120-264)||(29371671-29371815)
chr3 (120-264)||(39528749-39528893)
chr3 (116-264)||(41349504-41349652)
chr3 (120-263)||(1352130-1352273)
chr3 (117-264)||(39807112-39807259)
chr3 (120-264)||(28228436-28228580)
chr3 (120-264)||(55365908-55366052)
chr3 (123-264)||(21974152-21974293)
chr3 (123-264)||(21996583-21996724)
chr3 (120-264)||(36737967-36738111)
chr3 (117-255)||(29014832-29014970)
chr3 (126-264)||(38855323-38855461)
chr3 (123-264)||(22157261-22157402)
chr3 (135-264)||(39518422-39518551)
chr3 (120-264)||(32839949-32840092)
chr3 (135-264)||(49040977-49041107)
chr3 (120-189)||(49319347-49319416)
chr3 (118-153)||(18997211-18997246)
chr3 (118-153)||(18999750-18999785)
chr3 (117-152)||(46878980-46879015)
chr3 (120-153)||(1351996-1352029)
chr3 (120-153)||(29014690-29014723)
chr3 (120-153)||(36737834-36737867)
chr3 (120-153)||(38855561-38855594)
chr3 (120-153)||(39518651-39518684)
chr3 (120-153)||(39528993-39529026)
chr3 (120-153)||(41349371-41349404)
chr3 (115-153)||(32677472-32677510)
chr3 (120-153)||(29371538-29371571)
chr3 (120-153)||(39806979-39807012)
[»] chr7 (35 HSPs)
chr7 (120-264)||(17904163-17904307)
chr7 (120-264)||(26770179-26770323)
chr7 (120-264)||(29427297-29427441)
chr7 (119-264)||(6387825-6387970)
chr7 (120-264)||(37179465-37179608)
chr7 (120-264)||(46467468-46467612)
chr7 (120-264)||(6389732-6389876)
chr7 (128-264)||(9876271-9876407)
chr7 (120-264)||(41921987-41922131)
chr7 (120-264)||(29890959-29891103)
chr7 (120-264)||(4405109-4405253)
chr7 (117-243)||(31503091-31503217)
chr7 (120-229)||(19523863-19523974)
chr7 (123-219)||(9332364-9332460)
chr7 (135-262)||(33974506-33974636)
chr7 (119-264)||(12252068-12252216)
chr7 (117-188)||(29722952-29723023)
chr7 (140-264)||(9215595-9215722)
chr7 (120-235)||(43701551-43701666)
chr7 (135-264)||(46689878-46690011)
chr7 (120-189)||(33379175-33379244)
chr7 (120-264)||(31858225-31858371)
chr7 (135-190)||(49011065-49011120)
chr7 (178-264)||(48049057-48049146)
chr7 (120-153)||(4405353-4405386)
chr7 (120-153)||(17904407-17904440)
chr7 (120-153)||(29723381-29723414)
chr7 (120-153)||(29890826-29890859)
chr7 (120-265)||(33915717-33915863)
chr7 (120-153)||(37179331-37179364)
chr7 (120-152)||(46467335-46467367)
chr7 (140-264)||(5514797-5514923)
chr7 (120-153)||(6387692-6387725)
chr7 (210-264)||(22753201-22753257)
chr7 (120-152)||(26770424-26770456)
[»] chr8 (23 HSPs)
chr8 (110-264)||(28378937-28379091)
chr8 (120-264)||(33837862-33838006)
chr8 (115-264)||(2508929-2509078)
chr8 (120-264)||(45334409-45334553)
chr8 (120-264)||(25106211-25106355)
chr8 (125-250)||(13469652-13469777)
chr8 (120-264)||(9739985-9740129)
chr8 (120-264)||(38495605-38495749)
chr8 (120-243)||(27793345-27793468)
chr8 (164-264)||(2626371-2626472)
chr8 (120-264)||(32183614-32183759)
chr8 (120-189)||(27024433-27024502)
chr8 (120-187)||(25978969-25979036)
chr8 (120-188)||(8235162-8235230)
chr8 (117-153)||(25106455-25106491)
chr8 (119-153)||(28379191-28379225)
chr8 (119-153)||(45334275-45334309)
chr8 (120-153)||(27027655-27027688)
chr8 (120-153)||(33837729-33837762)
chr8 (120-152)||(9740231-9740263)
chr8 (135-182)||(2626667-2626714)
chr8 (120-153)||(38495472-38495505)
chr8 (120-152)||(13469508-13469540)
[»] chr5 (21 HSPs)
chr5 (119-264)||(12399079-12399224)
chr5 (119-264)||(34208537-34208682)
chr5 (117-264)||(29874951-29875098)
chr5 (119-264)||(23090297-23090442)
chr5 (118-264)||(4145692-4145838)
chr5 (120-264)||(4695295-4695439)
chr5 (120-259)||(3077597-3077736)
chr5 (119-254)||(42757953-42758089)
chr5 (185-264)||(22646042-22646121)
chr5 (120-189)||(41610625-41610694)
chr5 (120-189)||(42793040-42793109)
chr5 (135-235)||(12096365-12096466)
chr5 (120-153)||(12398946-12398979)
chr5 (120-153)||(29875198-29875231)
chr5 (120-153)||(42757805-42757838)
chr5 (120-153)||(42793562-42793595)
chr5 (123-187)||(4434783-4434847)
chr5 (120-152)||(23090543-23090575)
chr5 (120-152)||(41610373-41610405)
chr5 (120-153)||(34208782-34208815)
chr5 (135-167)||(594330-594362)
[»] chr6 (16 HSPs)
chr6 (120-264)||(27312249-27312393)
chr6 (120-264)||(32274434-32274578)
chr6 (122-264)||(8504835-8504977)
chr6 (114-264)||(5003876-5004026)
chr6 (120-264)||(29452675-29452820)
chr6 (120-222)||(12174700-12174802)
chr6 (120-264)||(31171123-31171267)
chr6 (181-264)||(2543142-2543225)
chr6 (120-264)||(7156370-7156502)
chr6 (120-235)||(18741947-18742062)
chr6 (120-167)||(29302501-29302548)
chr6 (120-153)||(8504733-8504766)
chr6 (120-153)||(27312114-27312147)
chr6 (120-153)||(2543325-2543358)
chr6 (119-152)||(18742191-18742224)
chr6 (120-153)||(32274678-32274711)
[»] chr1 (25 HSPs)
chr1 (115-264)||(47669114-47669263)
chr1 (117-264)||(10737834-10737981)
chr1 (120-263)||(46220259-46220402)
chr1 (120-258)||(4817269-4817407)
chr1 (120-264)||(9831503-9831647)
chr1 (118-264)||(18126849-18126994)
chr1 (120-264)||(3384728-3384870)
chr1 (120-256)||(4055484-4055620)
chr1 (120-264)||(48564818-48564961)
chr1 (135-259)||(8889457-8889581)
chr1 (121-264)||(7414208-7414351)
chr1 (120-222)||(1236205-1236307)
chr1 (140-264)||(39241172-39241296)
chr1 (120-199)||(1749521-1749600)
chr1 (120-189)||(33020206-33020275)
chr1 (143-235)||(26842462-26842552)
chr1 (120-153)||(10737701-10737734)
chr1 (120-153)||(46220503-46220536)
chr1 (120-153)||(47669363-47669396)
chr1 (121-153)||(1236071-1236103)
chr1 (120-151)||(48565063-48565094)
chr1 (123-153)||(9831747-9831777)
chr1 (120-153)||(8889687-8889720)
chr1 (120-153)||(33023428-33023461)
chr1 (120-153)||(37875727-37875760)
[»] chr2 (15 HSPs)
chr2 (122-264)||(15233757-15233899)
chr2 (120-264)||(43040982-43041126)
chr2 (120-264)||(35793040-35793183)
chr2 (120-264)||(41252415-41252559)
chr2 (120-258)||(31296083-31296221)
chr2 (116-264)||(41642887-41643038)
chr2 (120-263)||(44104683-44104833)
chr2 (135-264)||(31903513-31903641)
chr2 (116-189)||(10118660-10118733)
chr2 (135-257)||(21727684-21727809)
chr2 (117-153)||(15233999-15234035)
chr2 (117-152)||(44104543-44104578)
chr2 (120-153)||(10112339-10112372)
chr2 (120-153)||(43040849-43040882)
chr2 (120-189)||(36963131-36963200)
[»] chr4 (20 HSPs)
chr4 (120-264)||(45590742-45590886)
chr4 (120-264)||(8955909-8956053)
chr4 (130-264)||(34334342-34334476)
chr4 (120-264)||(33288538-33288682)
chr4 (126-264)||(49162108-49162245)
chr4 (120-264)||(18835705-18835851)
chr4 (120-212)||(30469353-30469445)
chr4 (135-264)||(50774191-50774325)
chr4 (123-219)||(39481906-39482002)
chr4 (186-264)||(36971115-36971192)
chr4 (111-189)||(19256177-19256255)
chr4 (120-167)||(36016279-36016326)
chr4 (135-189)||(36968353-36968407)
chr4 (135-235)||(26025685-26025784)
chr4 (135-264)||(33109031-33109163)
chr4 (120-154)||(19257103-19257137)
chr4 (123-153)||(8955779-8955809)
chr4 (120-153)||(45590986-45591019)
chr4 (120-153)||(49162332-49162365)
chr4 (121-153)||(39482106-39482138)
[»] scaffold0103 (1 HSPs)
scaffold0103 (120-264)||(44619-44764)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 32677854 - 32677610
Alignment:
Q  20 gctagatcaggaggctgatcttttcccactgcaggattggcctgtatggagattaagggaagacaaatgatggttatcaacaaacaatagaataatttat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32677854 gctagatcaggaggctgatcttttcccactgcaggattggcctgtatggagattaagggaagacaaatgatggttatcaacaaacaatagaataatttat 32677755  T
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32677754 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 32677655  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32677654 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 32677610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 18996967 - 18997111
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18996967 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 18997066  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  18997067 cttgttggaaaacacaataaactattaaagtagttgtgacttttg 18997111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 18999506 - 18999650
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18999506 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 18999605  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  18999606 cttgttggaaaacacaataaactattaaagtagttgtgacttttg 18999650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 29371815 - 29371671
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29371815 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 29371716  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  29371715 cttgttggaaaacacaataaactattaaagtacttgtgacctttg 29371671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 39528749 - 39528893
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  39528749 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 39528848  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  39528849 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 39528893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 116 - 264
Target Start/End: Complemental strand, 41349652 - 41349504
Alignment:
Q  116 ttattactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| |||||||    
T  41349652 ttattactccctccattccttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttgttattgttttctcaagtt 41349553  T
Q  216 tacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41349552 tacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 41349504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 120 - 263
Target Start/End: Complemental strand, 1352273 - 1352130
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  1352273 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 1352174  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgaccttt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1352173 cttgttggaaaacacaataaactattaaagtagttgtgaccttt 1352130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 117 - 264
Target Start/End: Complemental strand, 39807259 - 39807112
Alignment:
Q  117 tattactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagttt 216  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||    
T  39807259 tattacttcctccattccttttcttttgatgttttagaacttcaactatattacaaaacttttgatgttttagtgaatttgttattgttttctcaagttt 39807160  T
Q  217 acccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39807159 accctcgttggaaaacacaataaactattaaagtagttgtgacctttg 39807112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 28228436 - 28228580
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28228436 tactctctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 28228535  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||    
T  28228536 cttgttggaaaatacaataaactattaaagtagctgtgacatttg 28228580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 55365908 - 55366052
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||  ||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  55365908 tactcccttcattccttttcttttgatgttttagaacttcaactatatttcaaattttttgatgttttagtgaatttattattgttttctcaagtttacc 55366007  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  55366008 cttgttagaaaacacaataaactattaaagtagttgtgacctttg 55366052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 123 - 264
Target Start/End: Original strand, 21974152 - 21974293
Alignment:
Q  123 tccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttaccctt 222  Q
    |||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||    
T  21974152 tccctccatttcttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaggtttaccttt 21974251  T
Q  223 gttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  21974252 gttggaaaacaccataaaatattaaagtagttgtgacctttg 21974293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 123 - 264
Target Start/End: Original strand, 21996583 - 21996724
Alignment:
Q  123 tccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttaccctt 222  Q
    |||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||    
T  21996583 tccctccatttcttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaggtttaccttt 21996682  T
Q  223 gttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  21996683 gttggaaaacaccataaaatattaaagtagttgtgacctttg 21996724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 36738111 - 36737967
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||| | |||||||||||||||||||||||||||||| ||||||||   ||||||||||||||||||||||||||||||||||||| ||||||||||     
T  36738111 tactccattcattccttttcttttgatgttttagaactttaactatattttaaaacttttgatgttttagtgaatttattattgttttctcaagtttact 36738012  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  36738011 cttgttggaaaacacaataaactattaaagtagttgtgacatttg 36737967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 117 - 255
Target Start/End: Complemental strand, 29014970 - 29014832
Alignment:
Q  117 tattactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagttt 216  Q
    ||||||| | ||||||| |||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29014970 tattacttcatccattctttttttttttatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagttt 29014871  T
Q  217 acccttgttggaaaacacaataaactattaaagtagttg 255  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  29014870 acccttgttggaaaacacattaaactattaaagtagttg 29014832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 126 - 264
Target Start/End: Original strand, 38855323 - 38855461
Alignment:
Q  126 ctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacccttgtt 225  Q
    ||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||    
T  38855323 ctccattccttttcttttgatgttttaaaacatcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaattttatccttgtt 38855422  T
Q  226 ggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    | ||||||| |||||||||||||||||||||||||||||    
T  38855423 gaaaaacaccataaactattaaagtagttgtgacctttg 38855461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 123 - 264
Target Start/End: Original strand, 22157261 - 22157402
Alignment:
Q  123 tccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttaccctt 222  Q
    |||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||| ||| ||||||| ||    
T  22157261 tccctccatttcttttcttttgatgttttagaacttcaactatattctaaaacttttgatattttagtgaatttattattgttttctcaggtttaccttt 22157360  T
Q  223 gttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  22157361 gttggaaaacaccataaaatattaaagtagttgtgacctttg 22157402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 135 - 264
Target Start/End: Original strand, 39518422 - 39518551
Alignment:
Q  135 ttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacccttgttggaaaacac 234  Q
    |||| ||||||||||||| ||||||||||||||  ||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  39518422 tttttttttgatgttttaaaacttcaactatatttcaaaacttttgatattttagtgaatttattattgttttctcaagtttatccttgttggaaaacac 39518521  T
Q  235 aataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||| |||| ||||    
T  39518522 aataaactattaaagtagttatgacatttg 39518551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 32839949 - 32840092
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||| ||||||||| || ||||||||||||||||||||   |||  |||||||||||||||||||| |||||| |||| | ||||||  |    
T  32839949 tactccctccattcattttctttttatattttagaacttcaactatattttaaattttttgatgttttagtgaatt-attattattttcttaagtttgtc 32840047  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||| |||||||||||||||||||||| |||||||||| ||||    
T  32840048 cttgttagaaaacacaataaactattaaaatagttgtgacatttg 32840092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 264
Target Start/End: Complemental strand, 49041107 - 49040977
Alignment:
Q  135 ttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacccttgttggaaaaca- 233  Q
    ||||||||||||||||||||||||||||||| | ||||||  ||||||||||||||  ||||| |||  ||||  || |||||||||||||| ||||||     
T  49041107 ttttcttttgatgttttagaacttcaactatgttccaaaatatttgatgttttagtatatttaatat--ttttcccacgtttacccttgttgaaaaacaa 49041010  T
Q  234 --caataaactattaaagtagttgtgacctttg 264  Q
      ||  |||||||||||| ||||| ||||||||    
T  49041009 accataaaactattaaaggagttgggacctttg 49040977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 49319347 - 49319416
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttag 189  Q
    |||| |||||||||||||||||||||||||||||||||| ||||  || | |||| ||||||||||||||    
T  49319347 tacttcctccattccttttcttttgatgttttagaacttaaacttcattctaaaaattttgatgttttag 49319416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 18997246 - 18997211
Alignment:
Q  118 attactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||||    
T  18997246 attactccctccattccttttcttttgatgttttag 18997211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 18999785 - 18999750
Alignment:
Q  118 attactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||||    
T  18999785 attactccctccattccttttcttttgatgttttag 18999750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 152
Target Start/End: Complemental strand, 46879015 - 46878980
Alignment:
Q  117 tattactccctccattccttttcttttgatgtttta 152  Q
    ||||||||||||||||||||||||||||||||||||    
T  46879015 tattactccctccattccttttcttttgatgtttta 46878980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 1351996 - 1352029
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  1351996 tactccctccattccttttcttttgatgttttag 1352029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 29014690 - 29014723
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  29014690 tactccctccattccttttcttttgatgttttag 29014723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 36737834 - 36737867
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  36737834 tactccctccattccttttcttttgatgttttag 36737867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 38855594 - 38855561
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  38855594 tactccctccattccttttcttttgatgttttag 38855561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 39518684 - 39518651
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  39518684 tactccctccattccttttcttttgatgttttag 39518651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 39529026 - 39528993
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  39529026 tactccctccattccttttcttttgatgttttag 39528993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 41349371 - 41349404
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  41349371 tactccctccattccttttcttttgatgttttag 41349404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 32677472 - 32677510
Alignment:
Q  115 tttattactccctccattccttttcttttgatgttttag 153  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  32677472 tttactactccctccattcattttcttttgatgttttag 32677510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 29371538 - 29371571
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    |||||||||||||| |||||||||||||||||||    
T  29371538 tactccctccattcattttcttttgatgttttag 29371571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 39806979 - 39807012
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    |||||||| |||||||||||||||||||||||||    
T  39806979 tactcccttcattccttttcttttgatgttttag 39807012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 17904163 - 17904307
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17904163 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 17904262  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  17904263 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 17904307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 26770179 - 26770323
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26770179 tactccctccattccttttcttttgatgttttagaacttcaactaaattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 26770278  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26770279 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 26770323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 29427441 - 29427297
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29427441 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 29427342  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  29427341 cttgttggaaaacacaataaactattaaagtagttgtgatctttg 29427297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 119 - 264
Target Start/End: Complemental strand, 6387970 - 6387825
Alignment:
Q  119 ttactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttac 218  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6387970 ttactccctccattccttttcttttgatgttttagaactgcaactatattccaaaacttttgatgttttagtgaatttgttattgttttatcaagtttac 6387871  T
Q  219 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  6387870 ccttgttggaaaacacaataaactattaaagtagttgtgacatttg 6387825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 37179608 - 37179465
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  37179608 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttct-aagtttacc 37179510  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  37179509 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 37179465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 46467612 - 46467468
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46467612 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 46467513  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
     ||||||||||||||||||||||||||||||||||| ||||||||    
T  46467512 tttgttggaaaacacaataaactattaaagtagttgcgacctttg 46467468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 6389732 - 6389876
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  6389732 tactccctccattcattttgttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttact 6389831  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  6389832 cttgttggaaaacacaataaactattaaagtagttgtgacatttg 6389876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 128 - 264
Target Start/End: Original strand, 9876271 - 9876407
Alignment:
Q  128 ccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacccttgttgg 227  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  9876271 ccattccttttcttttgatgttttaaaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaattttacccttgttgg 9876370  T
Q  228 aaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||| |||||||||||||||||||||||||||||    
T  9876371 aaaacaccataaactattaaagtagttgtgacctttg 9876407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 41922131 - 41921987
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41922131 tactccctctatttcttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttaatattgttttatcaagtttacc 41922032  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||    
T  41922031 cttgttgaaaaacacaataaactattaaagtagttgcaacctttg 41921987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 29891103 - 29890959
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||| |||||||| ||||||||| |    
T  29891103 tactccctccattccttttcttttgatgttttaaaacttcaactatattccaaaatttttgatgttttagtgaatttatgattgttttctcaagtttatc 29891004  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  29891003 cttgatggaaaacacaataaactattaaagtagttgtgacttttg 29890959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 4405109 - 4405253
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||| ||||||||||||||||||||||||||||||| |||| |||| |    
T  4405109 tactccctccatttcttttcttttgatgttttaaaacttcaactatattctaaaacatttgatgttttagtgaatttattattgttttctcaattttatc 4405208  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  4405209 cttgttggaaaacaccataaattattaaagtagttgtgacctttg 4405253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 117 - 243
Target Start/End: Complemental strand, 31503217 - 31503091
Alignment:
Q  117 tattactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagttt 216  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||    
T  31503217 tattacaccctccgttccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttcttaagttt 31503118  T
Q  217 acccttgttggaaaacacaataaacta 243  Q
    |||||||||||||||||| ||||||||    
T  31503117 acccttgttggaaaacactataaacta 31503091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 19523974 - 19523863
Alignment:
Q  120 tactccctccattccttttcttt--tgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagttta 217  Q
    ||||||||| ||||||||| |||  ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19523974 tactccctctattccttttttttgttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttattattgttttatcaagttta 19523875  T
Q  218 cccttgttggaa 229  Q
    ||||||||||||    
T  19523874 cccttgttggaa 19523863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 9332364 - 9332460
Alignment:
Q  123 tccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    ||||||||||  |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  9332364 tccctccattttttttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattgttttctcaggtttacc 9332460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 135 - 262
Target Start/End: Original strand, 33974506 - 33974636
Alignment:
Q  135 ttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacccttgttggaaaacac 234  Q
    ||||||||||||||||| ||||||||||||||| ||||||  ||| ||||||||||  ||||| |||| ||||  ||||||||||||||||| |||||||    
T  33974506 ttttcttttgatgttttcgaacttcaactatattccaaaatattttatgttttagtatatttaatatttttttcccaagtttacccttgttgaaaaacac 33974605  T
Q  235 a--at-aaactattaaagtagttgtgacctt 262  Q
    |  || |||||||||||| ||||||||||||    
T  33974606 accataaaactattaaaggagttgtgacctt 33974636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 264
Target Start/End: Original strand, 12252068 - 12252216
Alignment:
Q  119 ttactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttac 218  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||  ||||||||| || |  ||||| | |||||||  |||||||||    
T  12252068 ttactccctccattttttttcttttgatgttttagaacttcaactatattccaaaatatttgatgttctaatatatttaatcttgttttcccaagtttac 12252167  T
Q  219 ccttgttggaaaacaca--at-aaactattaaagtagttgtgacctttg 264  Q
     || |||| ||||||||  || |||||||||||| |||| |||| ||||    
T  12252168 tctagttgaaaaacacaccataaaactattaaaggagttatgacttttg 12252216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 29722952 - 29723023
Alignment:
Q  117 tattactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgtttta 188  Q
    |||||||| ||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||    
T  29722952 tattactctctccattccttttcttttgatattttagaacttaaactttattccaaaacttttgatgtttta 29723023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 264
Target Start/End: Complemental strand, 9215722 - 9215595
Alignment:
Q  140 ttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacccttgttggaaa--acacaat 237  Q
    |||||||||||||||||||||||||||| ||||||  ||| ||||||||||  || || |||| |||| |||| ||||||||||||| |||  |||| ||    
T  9215722 ttttgatgttttagaacttcaactatattccaaaatatttaatgttttagtatatgtaatatttttttttcaaatttacccttgttgaaaaagacaccat 9215623  T
Q  238 -aaactattaaagtagttgtgacctttg 264  Q
     ||| |||||||| ||||||||||||||    
T  9215622 aaaattattaaaggagttgtgacctttg 9215595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 235
Target Start/End: Original strand, 43701551 - 43701666
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttat-caagtttac 218  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  || ||||||  |||||||||||||    |||| |||| |||||| ||| |||||    
T  43701551 tactccctccattccttttcttttgatgttttagaacttaaacttcattccaaaaaatttgatgttttagaatttttaatatt-ttttatccaattttac 43701649  T
Q  219 ccttgttggaaaacaca 235  Q
    |||||||| ||||||||    
T  43701650 ccttgttgaaaaacaca 43701666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 264
Target Start/End: Original strand, 46689878 - 46690011
Alignment:
Q  135 ttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacccttgttggaaa---a 231  Q
    ||||||||||||||||||||||||||||||||| ||||||   |||||||||||||    ||| |||| ||||  ||||||||||||| ||| |||   |    
T  46689878 ttttcttttgatgttttagaacttcaactatattccaaaatacttgatgttttagtatggttaatatttttttcccaagtttaccctttttgaaaaaaca 46689977  T
Q  232 cacaat-aaactattaaagtagttgtgacctttg 264  Q
    ||| || |||||||||||| ||||||||| ||||    
T  46689978 cacgataaaactattaaagaagttgtgacatttg 46690011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 33379244 - 33379175
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttag 189  Q
    ||||||||||||| ||||||||||||||||||||||||||||||  ||  |||||  |||||||||||||    
T  33379244 tactccctccatttcttttcttttgatgttttagaacttcaacttgatttcaaaatatttgatgttttag 33379175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 31858371 - 31858225
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||||   ||||  ||||||||||||||  ||||| | || ||||  ||| ||||||    
T  31858371 tactccctccattttttttcttttgatgttttacaacttcaactatattttaaaatatttgatgttttagtatatttaat-tttttttcccaaatttacc 31858273  T
Q  220 cttgttggaaaacaca--at-aaactattaaagtagttgtgacctttg 264  Q
    || |||| ||||||||  || ||| |||||||  ||||||||||||||    
T  31858272 ctcgttgaaaaacacatcataaaagtattaaatgagttgtgacctttg 31858225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 49011120 - 49011065
Alignment:
Q  135 ttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagt 190  Q
    ||||||||||||||||||| |||||||||||||  |||||| ||||||||||||||    
T  49011120 ttttcttttgatgttttaggacttcaactatatttcaaaacatttgatgttttagt 49011065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 48049057 - 48049146
Alignment:
Q  178 ttgatgttttagtgaatttattattgttttatcaagtttacccttgttggaaaacacaat---aaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||  ||||| |||| ||||  ||||||||||| ||||| |||||||| |   |||||||||||| ||||||||||||||    
T  48049057 ttgatgttttagtatatttaatatttttttcccaagtttacccctgttgaaaaacacactagaaaactattaaaggagttgtgacctttg 48049146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 4405386 - 4405353
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  4405386 tactccctccattccttttcttttgatgttttag 4405353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 17904440 - 17904407
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  17904440 tactccctccattccttttcttttgatgttttag 17904407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 29723414 - 29723381
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  29723414 tactccctccattccttttcttttgatgttttag 29723381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 29890826 - 29890859
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  29890826 tactccctccattccttttcttttgatgttttag 29890859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 265
Target Start/End: Original strand, 33915717 - 33915863
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||  |||||||||| |||||| ||| || ||||||||  |||||  ||||||||||||||  ||||| | || ||||  |||||||| |    
T  33915717 tactccctccattt-ttttcttttgttgtttttgaattttaactatatttcaaaatatttgatgttttagtatatttaatttttttttcccaagttta-c 33915814  T
Q  220 cttgttggaaaacaca--at-aaactattaaagtagttgtgacctttgc 265  Q
    ||||||| ||||||||  || |||||||||||   ||||||||||||||    
T  33915815 cttgttgaaaaacacaccataaaactattaaataggttgtgacctttgc 33915863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 37179331 - 37179364
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  37179331 tactccctccattccttttcttttgatgttttag 37179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 46467335 - 46467367
Alignment:
Q  120 tactccctccattccttttcttttgatgtttta 152  Q
    |||||||||||||||||||||||||||||||||    
T  46467335 tactccctccattccttttcttttgatgtttta 46467367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 264
Target Start/End: Original strand, 5514797 - 5514923
Alignment:
Q  140 ttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacccttgttggaaaacacaat-- 237  Q
    |||| |||||||||||||| || ||||| | ||||  ||||||  ||||||  ||||| ||||  ||| |||||||||||||||||  |||||||| |      
T  5514797 ttttaatgttttagaactttaaatatattctaaaatatttgattatttagtatatttaatatttattt-tcaagtttacccttgttaaaaaacacactat 5514895  T
Q  238 -aaactattaaagtagttgtgacctttg 264  Q
     |||||||||||  ||||||||||||||    
T  5514896 aaaactattaaaagagttgtgacctttg 5514923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 6387692 - 6387725
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    |||| |||||||||||||||||||||||||||||    
T  6387692 tacttcctccattccttttcttttgatgttttag 6387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 22753257 - 22753201
Alignment:
Q  210 caagtttacccttgttggaaaacaca--ataaactattaaagtagttgtgacctttg 264  Q
    ||||||||| |||||||||||||| |  |||||||||||||  ||||||||||||||    
T  22753257 caagtttacgcttgttggaaaacaaactataaactattaaaaaagttgtgacctttg 22753201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 26770456 - 26770424
Alignment:
Q  120 tactccctccattccttttcttttgatgtttta 152  Q
    |||||||||||||| ||||||||||||||||||    
T  26770456 tactccctccattcattttcttttgatgtttta 26770424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 110 - 264
Target Start/End: Original strand, 28378937 - 28379091
Alignment:
Q  110 aataatttattactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttat 209  Q
    ||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  28378937 aataattaattactccctccattatttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttct 28379036  T
Q  210 caagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28379037 caagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 28379091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 33838006 - 33837862
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  33838006 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 33837907  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33837906 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 33837862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 115 - 264
Target Start/End: Complemental strand, 2509078 - 2508929
Alignment:
Q  115 tttattactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagt 214  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||    
T  2509078 tttactactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagt 2508979  T
Q  215 ttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2508978 ttacccttgttggaaaacacagtaaactattaaagtagttgtgacctttg 2508929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 45334553 - 45334409
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  45334553 tactccctccattccttttcttttgatgttttagaactttaactatattccaaaacttttgatgttttagtgaatttgttattgttttttcaagtttacc 45334454  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  45334453 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 45334409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 25106211 - 25106355
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| |||||||||||    
T  25106211 tactctctccattccttttcttttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttatgattgttttttcaagtttacc 25106310  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  25106311 cttgatggaaaacacaataaactattaaagtagttgtgacttttg 25106355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 125 - 250
Target Start/End: Complemental strand, 13469777 - 13469652
Alignment:
Q  125 cctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacccttgt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||| |||||||| ||||||||||||||||    
T  13469777 cctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatattttagtaaatttataattgttttctcaagtttacccttgt 13469678  T
Q  225 tggaaaacacaataaactattaaagt 250  Q
    ||||||||||||||||||||||||||    
T  13469677 tggaaaacacaataaactattaaagt 13469652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 9739985 - 9740129
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||  ||||||||||||||||||| |||||||||||||| ||| ||||||||| |    
T  9739985 tactccctccattccttttcttttgatgttttagaacttcatgtatatttcaaaacttttgatgttttactgaatttattattgctttctcaagtttatc 9740084  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||    
T  9740085 cttgttgaaaaacacaataaactattaaagtagttgtgacatttg 9740129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 38495749 - 38495605
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||||| | |||| |||||||||||| ||||||||||||||||||| |||||||||||    
T  38495749 tacttcctccattctttttcttgtgatgttttagaacttcaactatattctaaaatttttgatgttttggtgaatttattattgttttctcaagtttacc 38495650  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  38495649 cttgttggaaaacacaataaactattaaagtagttatgacatttg 38495605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 27793468 - 27793345
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||     
T  27793468 tactccttccattcattttcttttgatgttttagatcttcaactatattccaaaacttttaatgttttagtgaatttattattgttttctcaagtttact 27793369  T
Q  220 cttgttggaaaacacaataaacta 243  Q
    ||||||||||||||||||||||||    
T  27793368 cttgttggaaaacacaataaacta 27793345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 164 - 264
Target Start/End: Complemental strand, 2626472 - 2626371
Alignment:
Q  164 atataccaaaacttttgatgttttagtgaatttattatt-gttttatcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctt 262  Q
    |||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2626472 atattccaaaacttttgatgttttagtgaatttattatttgttttctcaagtttacccttgttggaaaacacaataaactattaaagtaattgtgacctt 2626373  T
Q  263 tg 264  Q
    ||    
T  2626372 tg 2626371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 32183759 - 32183614
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||  ||||| |||| ||||  ||||||||||    
T  32183759 tactcccttcattttttttcttttgatgttttagaacttcaactatattccaaaatatttgatgttttagtatatttaatatttttttcccaagtttacc 32183660  T
Q  220 cttgttggaaaacaca--ataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||  |||||||||| ||| ||||| ||||||||    
T  32183659 cttgttggaaaacacaccataaactatt-aaggagttgcgacctttg 32183614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 27024433 - 27024502
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttag 189  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||||||||    
T  27024433 tactccctccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 27024502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 25979036 - 25978969
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgtttt 187  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| |||  |||||| |||||||||||    
T  25979036 tactccctccatttcttttcttttgatgttttaggacttcaactttatttcaaaacatttgatgtttt 25978969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 8235162 - 8235230
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgtttta 188  Q
    |||||||||||||  ||||||||||||||||||| ||||||| | |||  |||||| ||||||||||||    
T  8235162 tactccctccatttattttcttttgatgttttaggacttcaattttatttcaaaacatttgatgtttta 8235230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 25106491 - 25106455
Alignment:
Q  117 tattactccctccattccttttcttttgatgttttag 153  Q
    |||||||||||||||||||||||||||||||||||||    
T  25106491 tattactccctccattccttttcttttgatgttttag 25106455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 28379225 - 28379191
Alignment:
Q  119 ttactccctccattccttttcttttgatgttttag 153  Q
    |||||||||||||||||||||||||||||||||||    
T  28379225 ttactccctccattccttttcttttgatgttttag 28379191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 45334275 - 45334309
Alignment:
Q  119 ttactccctccattccttttcttttgatgttttag 153  Q
    |||||||||||||||||||||||||||||||||||    
T  45334275 ttactccctccattccttttcttttgatgttttag 45334309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 27027688 - 27027655
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  27027688 tactccctccattccttttcttttgatgttttag 27027655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 33837729 - 33837762
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  33837729 tactccctccattccttttcttttgatgttttag 33837762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 9740263 - 9740231
Alignment:
Q  120 tactccctccattccttttcttttgatgtttta 152  Q
    |||||||||||||||||||||||||||||||||    
T  9740263 tactccctccattccttttcttttgatgtttta 9740231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 2626714 - 2626667
Alignment:
Q  135 ttttcttttgatgttttagaacttcaactatataccaaaacttttgat 182  Q
    |||| |||| || |||||||||||||||||||| ||||||||||||||    
T  2626714 ttttttttttatattttagaacttcaactatattccaaaacttttgat 2626667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 38495472 - 38495505
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    |||||||||||||| |||||||||||||||||||    
T  38495472 tactccctccattcattttcttttgatgttttag 38495505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 13469508 - 13469540
Alignment:
Q  120 tactccctccattccttttcttttgatgtttta 152  Q
    |||||| ||||||||||||||||||||||||||    
T  13469508 tactccttccattccttttcttttgatgtttta 13469540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 8e-70; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 119 - 264
Target Start/End: Complemental strand, 12399224 - 12399079
Alignment:
Q  119 ttactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  12399224 ttactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttac 12399125  T
Q  219 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12399124 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 12399079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 119 - 264
Target Start/End: Original strand, 34208537 - 34208682
Alignment:
Q  119 ttactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  34208537 ttactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttac 34208636  T
Q  219 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  34208637 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 34208682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 117 - 264
Target Start/End: Original strand, 29874951 - 29875098
Alignment:
Q  117 tattactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagttt 216  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  29874951 tattactccctccattctttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagttt 29875050  T
Q  217 acccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29875051 acccttgttggaaaacacaataaactattaaagtagttgtgacctttg 29875098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 119 - 264
Target Start/End: Original strand, 23090297 - 23090442
Alignment:
Q  119 ttactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  23090297 ttactccctccattccttttcttttgatgttttagaacttcaactgtattccaaaatttttgatgttttagtgaatttgttattgttttctcaagtttac 23090396  T
Q  219 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23090397 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 23090442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 118 - 264
Target Start/End: Original strand, 4145692 - 4145838
Alignment:
Q  118 attactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagttta 217  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||| | |||||||    
T  4145692 attactcgctccattccttttcttttgatgttttagaactttaactatattccaaaacttttgatgttttagtgaatttgttattgttttcttaagttta 4145791  T
Q  218 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  4145792 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 4145838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 4695439 - 4695295
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  4695439 tactcccttcattccttttcttttgattttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 4695340  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  4695339 cttgttggaaaacacaataaactattaaagtagttgtgacatttg 4695295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 120 - 259
Target Start/End: Original strand, 3077597 - 3077736
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| |||||||||| ||||||||| |    
T  3077597 tactccctccattcattttcttttgatgttttagaatttcaactatattttaaaacttttgatgttttagtgaatttgttattgttttctcaagtttatc 3077696  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgac 259  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3077697 cttgttggaaaacacaataaactattaaagtagttgtgac 3077736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 119 - 254
Target Start/End: Complemental strand, 42758089 - 42757953
Alignment:
Q  119 ttactccctccattccttttcttttg-atgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagttta 217  Q
    ||||||| ||||||| |||| ||||  ||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||| |||||||||    
T  42758089 ttactccttccattcatttttttttttatgttttagaacttcaactatttttcaaaacttttgatgttttagtgaatttattattgttttctcaagttta 42757990  T
Q  218 cccttgttggaaaacacaataaactattaaagtagtt 254  Q
     |||||||||||||||| |||||||||||||||||||    
T  42757989 tccttgttggaaaacacgataaactattaaagtagtt 42757953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 22646121 - 22646042
Alignment:
Q  185 tttagtgaatttattattgttttatcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||||||||| ||||||||| |||||||| ||||||| |||||||||||||||||||||||| ||||    
T  22646121 tttagtgaatttattattgttttctcaagtttaaccttgttgaaaaacaccataaactattaaagtagttgtgacttttg 22646042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 41610694 - 41610625
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttag 189  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||    
T  41610694 tactctctccatttcttttcttttgatgttttagaacttaaactttattccaaaacttttgatgttttag 41610625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 42793040 - 42793109
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttag 189  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||||||||    
T  42793040 tactcactccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 42793109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 12096466 - 12096365
Alignment:
Q  135 ttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagt-gaatttattattgttttatcaagtttacccttgttggaaaaca 233  Q
    ||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| |  | |||| |||| |||| |||||| ||| ||||||| ||||||    
T  12096466 ttttcttttgatgttttaggacttcaactatattccaaaacatttgatgttttaatatattttaatattcttttctcaagtgtactcttgttgaaaaaca 12096367  T
Q  234 ca 235  Q
    ||    
T  12096366 ca 12096365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 12398946 - 12398979
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  12398946 tactccctccattccttttcttttgatgttttag 12398979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 29875231 - 29875198
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  29875231 tactccctccattccttttcttttgatgttttag 29875198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 42757805 - 42757838
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  42757805 tactccctccattccttttcttttgatgttttag 42757838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 42793595 - 42793562
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  42793595 tactccctccattccttttcttttgatgttttag 42793562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 4434783 - 4434847
Alignment:
Q  123 tccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgtttt 187  Q
    |||||||||| |||||||||||||||||||| ||||||||| |||  ||| |  |||||||||||    
T  4434783 tccctccatttcttttcttttgatgttttaggacttcaactttatttcaagatatttgatgtttt 4434847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 23090575 - 23090543
Alignment:
Q  120 tactccctccattccttttcttttgatgtttta 152  Q
    |||||||||||||||||||||||||||||||||    
T  23090575 tactccctccattccttttcttttgatgtttta 23090543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 41610373 - 41610405
Alignment:
Q  120 tactccctccattccttttcttttgatgtttta 152  Q
    |||||||||||||||||||||||||||||||||    
T  41610373 tactccctccattccttttcttttgatgtttta 41610405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 34208815 - 34208782
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||| ||||||||||||||    
T  34208815 tactccctccattcctttttttttgatgttttag 34208782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 594362 - 594330
Alignment:
Q  135 ttttcttttgatgttttagaacttcaactatat 167  Q
    |||||||||||||||||| ||||||||||||||    
T  594362 ttttcttttgatgttttaaaacttcaactatat 594330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 27312393 - 27312249
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  27312393 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 27312294  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27312293 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 27312249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 32274434 - 32274578
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  32274434 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 32274533  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32274534 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 32274578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 122 - 264
Target Start/End: Complemental strand, 8504977 - 8504835
Alignment:
Q  122 ctccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttaccct 221  Q
    |||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||| ||| |||||||||    
T  8504977 ctccctccattcattttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattattttctcaggtttaccct 8504878  T
Q  222 tgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  8504877 tgttgaaaaacacaataaactattaaagtagttgtgacctttg 8504835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 114 - 264
Target Start/End: Original strand, 5003876 - 5004026
Alignment:
Q  114 atttattactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaag 213  Q
    ||||| |||||  ||||||| |||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||    
T  5003876 atttactactcattccattcatttttttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattgttttctcaag 5003975  T
Q  214 tttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  5003976 tttacccttgttggaaaacacaataaactattaaagtagttttgacatttg 5004026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 29452820 - 29452675
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttatta-ttgttttatcaagtttac 218  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||| | |||  | ||||||||||||||||||||||| ||||||| ||||||||||    
T  29452820 tactccctccatttcttttcttctgatgttttagaacttcaactatattctaaatttcttgatgttttagtgaatttattacttgttttctcaagtttac 29452721  T
Q  219 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
     ||||||||||||||| ||||||||||||| |||||||||||||||    
T  29452720 acttgttggaaaacaccataaactattaaaatagttgtgacctttg 29452675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 12174700 - 12174802
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12174700 tactccctccattccttttcttttaatgttttagaactttaaatatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 12174799  T
Q  220 ctt 222  Q
    |||    
T  12174800 ctt 12174802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 31171267 - 31171123
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    ||||||||||||| |||||||||||||| ||||||| ||||| | ||| ||||||| || |||||| ||||||||||||||||||||| ||||||||| |    
T  31171267 tactccctccatttcttttcttttgatgatttagaaattcaaatgtattccaaaacattagatgttgtagtgaatttattattgttttctcaagtttatc 31171168  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
     || |||||||||||  |||||||||||| |||||||||||||||    
T  31171167 tttattggaaaacaccttaaactattaaaatagttgtgacctttg 31171123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 2543142 - 2543225
Alignment:
Q  181 atgttttagtgaatttattattgttttatcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  2543142 atgttttagtgaatttattattgttttctcaagtttacccttgttgaaaaacacaataaactattaaagtagttgtgacatttg 2543225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 7156502 - 7156370
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    ||||||||||||| |||||||||||||||||||||   |||||||||| |||||||||| ||||||||||||||||||||||||||||                
T  7156502 tactccctccatttcttttcttttgatgttttagacaatcaactatattccaaaactttagatgttttagtgaatttattattgtttt------------ 7156415  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||| |||||||||||||||| ||||||| ||||    
T  7156414 cttgttggaaaacaccataaactattaaagtaattgtgacatttg 7156370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 120 - 235
Target Start/End: Original strand, 18741947 - 18742062
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| |||  |||||| ||||||||||||||  ||||| |||||| || |||| ||||||    
T  18741947 tactccctccatttcttttcttttgatgttttaggacttcaactttatttcaaaacatttgatgttttagtatatttaatattgtattctcaaatttacc 18742046  T
Q  220 cttgttggaaaacaca 235  Q
    ||||||| ||||||||    
T  18742047 cttgttgaaaaacaca 18742062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 29302548 - 29302501
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatat 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29302548 tactccctccattccttttcttttgatgttttagaacttcaactatat 29302501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 8504733 - 8504766
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  8504733 tactccctccattccttttcttttgatgttttag 8504766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 27312114 - 27312147
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  27312114 tactccctccattccttttcttttgatgttttag 27312147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 2543358 - 2543325
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    |||||||||||||| |||||||||||||||||||    
T  2543358 tactccctccattcgttttcttttgatgttttag 2543325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 18742224 - 18742191
Alignment:
Q  119 ttactccctccattccttttcttttgatgtttta 152  Q
    |||||||||||||| |||||||||||||||||||    
T  18742224 ttactccctccatttcttttcttttgatgtttta 18742191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 32274711 - 32274678
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    |||||||||||||| |||||||||||||||||||    
T  32274711 tactccctccattcattttcttttgatgttttag 32274678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 115 - 264
Target Start/End: Original strand, 47669114 - 47669263
Alignment:
Q  115 tttattactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagt 214  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| ||||||    
T  47669114 tttaatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttgttattgttttctcaagt 47669213  T
Q  215 ttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47669214 ttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 47669263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 117 - 264
Target Start/End: Complemental strand, 10737981 - 10737834
Alignment:
Q  117 tattactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagttt 216  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||    
T  10737981 tattactcccttcattccttttcttttaatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaagttt 10737882  T
Q  217 acccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10737881 acccttgttggaaaacacaataaactattaaagtagttgtgacctttg 10737834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 120 - 263
Target Start/End: Original strand, 46220259 - 46220402
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  46220259 tactccctctattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 46220358  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgaccttt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46220359 cttgttggaaaacacaataaactattaaagtagttgtgaccttt 46220402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 120 - 258
Target Start/End: Original strand, 4817269 - 4817407
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  4817269 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttatcattgttttctcaagtttacc 4817368  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtga 258  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  4817369 cttgttggaaaacacaataaactattaaggtagttgtga 4817407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 9831503 - 9831647
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||| |||| |||||||||||    
T  9831503 tactccctccattccttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttgttattattttctcaagtttacc 9831602  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  9831603 cttgttggaaaacacaataaactattaaaatagttgtgacctttg 9831647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 118 - 264
Target Start/End: Original strand, 18126849 - 18126994
Alignment:
Q  118 attactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagttta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||    
T  18126849 attactccctccattccttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaagttta 18126948  T
Q  218 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||||| |||||||| ||||||||||||| ||||    
T  18126949 cccttgttggaaaacacaacaaactatt-aagtagttgtgacttttg 18126994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 3384870 - 3384728
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||| ||||| |||||||||||||||||||||| |||||||| |  |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3384870 tactcccttcattctttttcttttgatgttttagaacctcaactattt--caaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 3384773  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  3384772 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 3384728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 4055484 - 4055620
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  4055484 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaattaattattgttttctcaagtttacc 4055583  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgt 256  Q
    ||| ||||||||||||||  ||| |||||||||||||    
T  4055584 cttattggaaaacacaattcactgttaaagtagttgt 4055620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 48564818 - 48564961
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    ||||||||||||| ||||||||| ||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  48564818 tactccctccattacttttcttt-gatgttttaaaacttcaactatattccaaaaattttgatgttttagtgaatttattattgttttctcaagtttacc 48564916  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  48564917 cttgatggaaaacacaataaactattaaagtagttgtgacttttg 48564961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 135 - 259
Target Start/End: Original strand, 8889457 - 8889581
Alignment:
Q  135 ttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacccttgttggaaaacac 234  Q
    |||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  8889457 ttttttttttatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacccttgttgaaaaacac 8889556  T
Q  235 aataaactattaaagtagttgtgac 259  Q
    |||||||||||||||||||||||||    
T  8889557 aataaactattaaagtagttgtgac 8889581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 121 - 264
Target Start/End: Original strand, 7414208 - 7414351
Alignment:
Q  121 actccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttaccc 220  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||   |||  |||||||||||||||||||||||||||||||| ||||||||||||    
T  7414208 actccctccattcatttttttttgatgttttagaacttcaactatattttaaattttttgatgttttagtgaatttattattgttttctcaagtttaccc 7414307  T
Q  221 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||| |||||||||||||||||||||||||||||||| ||||    
T  7414308 ttgttgaaaaacacaataaactattaaagtagttgtgacatttg 7414351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 1236307 - 1236205
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  1236307 tactccctccattcattttcttttgatgttttagaactttaactatattccaaaacttttgatggtttagtgaatttattattgttttctcaagtttacc 1236208  T
Q  220 ctt 222  Q
    |||    
T  1236207 ctt 1236205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 140 - 264
Target Start/End: Original strand, 39241172 - 39241296
Alignment:
Q  140 ttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaag-tttacccttgttggaaaacacaata 238  Q
    |||| ||||||||||| |||||||||||  ||||||||||| ||||| |||||||||||||||||| ||||||| ||||| ||||||| ||||||| |||    
T  39241172 ttttaatgttttagaa-ttcaactatatttcaaaacttttgttgtttcagtgaatttattattgttgtatcaagttttactcttgttgaaaaacaccata 39241270  T
Q  239 aactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||||||| ||||    
T  39241271 aactattaaagtagttgtgacttttg 39241296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 1749600 - 1749521
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttatt 199  Q
    |||| |||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  1749600 tacttcctctattccttttcttttgatgttttagaactttaattatataccaaaacttttgatgttttagtgaatttatt 1749521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 33020206 - 33020275
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttag 189  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| | | |||||||||||||||||||||    
T  33020206 tactccctccattccttttcttttgatgttttagagcttaaacttttttccaaaacttttgatgttttag 33020275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 26842462 - 26842552
Alignment:
Q  143 tgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacccttgttggaaaacaca 235  Q
    |||||||||||||||||||||||||  |||||  ||||||||||||||  ||||| |||  |||| ||||||||| |||||||| ||||||||    
T  26842462 tgatgttttagaacttcaactatatttcaaaatatttgatgttttagtatatttaatat--ttttttcaagtttatccttgttgaaaaacaca 26842552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 10737701 - 10737734
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  10737701 tactccctccattccttttcttttgatgttttag 10737734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 46220536 - 46220503
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  46220536 tactccctccattccttttcttttgatgttttag 46220503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 47669396 - 47669363
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  47669396 tactccctccattccttttcttttgatgttttag 47669363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 1236071 - 1236103
Alignment:
Q  121 actccctccattccttttcttttgatgttttag 153  Q
    |||||||||||||||||||||||||||||||||    
T  1236071 actccctccattccttttcttttgatgttttag 1236103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 151
Target Start/End: Complemental strand, 48565094 - 48565063
Alignment:
Q  120 tactccctccattccttttcttttgatgtttt 151  Q
    ||||||||||||||||||||||||||||||||    
T  48565094 tactccctccattccttttcttttgatgtttt 48565063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 9831777 - 9831747
Alignment:
Q  123 tccctccattccttttcttttgatgttttag 153  Q
    |||||||||||||||||||||||||||||||    
T  9831777 tccctccattccttttcttttgatgttttag 9831747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 8889720 - 8889687
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||| ||||||||||||||    
T  8889720 tactccctccattccttttattttgatgttttag 8889687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 33023461 - 33023428
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    |||||||||||||||||||||||||| |||||||    
T  33023461 tactccctccattccttttcttttgacgttttag 33023428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 37875727 - 37875760
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||| ||||||||||||||||||||    
T  37875727 tactccctccatttcttttcttttgatgttttag 37875760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 122 - 264
Target Start/End: Original strand, 15233757 - 15233899
Alignment:
Q  122 ctccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttaccct 221  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  15233757 ctccctctattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttaccct 15233856  T
Q  222 tgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15233857 tgttggaaaacacaataaactattaaagtagttgtgacctttg 15233899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 43041126 - 43040982
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  43041126 tactccctccattccttttcttttgatgttttaaaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaattttacc 43041027  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  43041026 cttgttggaaaacaccataaactattaaagtagttgtgacctttg 43040982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 35793183 - 35793040
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  35793183 tactccctccattctttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagagaatttattattgtttt-tcaagtttacc 35793085  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  35793084 cttgttggaaaacacaataaactattaaagtagttgtgacatttg 35793040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 41252415 - 41252559
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||||| |    
T  41252415 tactccctccattccttttctttttatgttttagaacttcaaatatattccaaaacttttgatgttttagtgaatttattattgtgttctcaagtttatc 41252514  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  41252515 cttgttggaaaatacaataaactattaaagtagttgtgacatttg 41252559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 120 - 258
Target Start/End: Original strand, 31296083 - 31296221
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  31296083 tactccttccattctttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaaatttacc 31296182  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtga 258  Q
     |||||| |||||||||||||||||||||||||||||||    
T  31296183 tttgttgaaaaacacaataaactattaaagtagttgtga 31296221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 116 - 264
Target Start/End: Original strand, 41642887 - 41643038
Alignment:
Q  116 ttattactccctccattccttttcttttgatgtttt-agaacttcaactatata--ccaaaacttttgatgttttagtgaatttattattgttttatcaa 212  Q
    ||||||||||||||||| |||||||||||||||||| |||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  41642887 ttattactccctccatttcttttcttttgatgtttttagaatttcaactatatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 41642986  T
Q  213 gtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||| ||  |||||||||| |||||||||||||||||||||||||||||    
T  41642987 gtttaccttttctggaaaacaccataaactattaaagtagttgtgacctttg 41643038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 120 - 263
Target Start/End: Complemental strand, 44104833 - 44104683
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  44104833 tactccctccgttccttttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattattttctcaagtttacc 44104734  T
Q  220 c-------ttgttggaaaacacaataaactattaaagtagttgtgaccttt 263  Q
    |       ||||||||||||||||||||||||||| |||||||||||||||    
T  44104733 cttataaattgttggaaaacacaataaactattaaggtagttgtgaccttt 44104683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 135 - 264
Target Start/End: Complemental strand, 31903641 - 31903513
Alignment:
Q  135 ttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacccttgttggaaaacac 234  Q
    |||| |||||||||||||||||||||| ||||| |||||  ||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  31903641 tttttttttgatgttttagaacttcaaatatattccaaattttttgatgttttagtaaatttattattgttttatc-agtttacccttattggaaaacac 31903543  T
Q  235 aataaactattaaagtagttgtgacctttg 264  Q
     |||||||||||||||||||||||||||||    
T  31903542 cataaactattaaagtagttgtgacctttg 31903513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 10118733 - 10118660
Alignment:
Q  116 ttattactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttag 189  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| |||| ||| |||||||||||||||||||||    
T  10118733 ttattactccctccattccttttcttttgatattttagagcttaaactttattccaaaacttttgatgttttag 10118660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 257
Target Start/End: Original strand, 21727684 - 21727809
Alignment:
Q  135 ttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacccttgttg--gaaaac 232  Q
    |||||||||||||||||||||||||||||||||  |||||  ||||||||||| ||  |  || |||| |||   ||| |||||||||||||   |||||    
T  21727684 ttttcttttgatgttttagaacttcaactatatttcaaaatatttgatgttttggtataactaatattttttccccaaatttacccttgttgaaaaaaac 21727783  T
Q  233 acaat-aaactattaaagtagttgtg 257  Q
    ||||| |||||||||||| |||||||    
T  21727784 acaataaaactattaaaggagttgtg 21727809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 15234035 - 15233999
Alignment:
Q  117 tattactccctccattccttttcttttgatgttttag 153  Q
    |||||||||||||||||||||||||||||||||||||    
T  15234035 tattactccctccattccttttcttttgatgttttag 15233999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 44104543 - 44104578
Alignment:
Q  117 tattactccctccattccttttcttttgatgtttta 152  Q
    ||||||||||||||||||||||||||||||||||||    
T  44104543 tattactccctccattccttttcttttgatgtttta 44104578  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 10112339 - 10112372
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  10112339 tactccctccattccttttcttttgatgttttag 10112372  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 43040849 - 43040882
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||||||||||||||||||||||    
T  43040849 tactccctccattccttttcttttgatgttttag 43040882  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 36963131 - 36963200
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttag 189  Q
    ||||| ||| |||||||||||||| ||||||||||| || |||| |||  |||||  |||||||||||||    
T  36963131 tactcgctctattccttttcttttaatgttttagaatttaaactttatttcaaaaaatttgatgttttag 36963200  T

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Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 45590742 - 45590886
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45590742 tactccctccattcattttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaattcattattgttttatcaagtttacc 45590841  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
     ||||||||||||||||||||||||||||||||||||||||||||    
T  45590842 tttgttggaaaacacaataaactattaaagtagttgtgacctttg 45590886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 8956053 - 8955909
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8956053 tactccctccattcctttttttttgatgttttagaacttcaactatattacaaaacttttgatgttttagtgaatttgttattgttttatcaagtttacc 8955954  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||    
T  8955953 cttattggaaaacacaataaattattaaagtagttgtgacctttg 8955909  T

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Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 130 - 264
Target Start/End: Original strand, 34334342 - 34334476
Alignment:
Q  130 attccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacccttgttggaa 229  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| ||    
T  34334342 attccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgctttagtgaatttattattgtcttctcaagtttacccttgttgaaa 34334441  T
Q  230 aacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||||||||||||||| |||||    
T  34334442 aacacaataaactattaaagtagttgtgatctttg 34334476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 33288682 - 33288538
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    ||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33288682 tactccctccatttcttttcttttgatattttagaacttcaattatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 33288583  T
Q  220 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    | ||||||||||||||||| |||  ||||||||||||||| ||||    
T  33288582 catgttggaaaacacaatatactgataaagtagttgtgacatttg 33288538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 126 - 264
Target Start/End: Original strand, 49162108 - 49162245
Alignment:
Q  126 ctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacccttgtt 225  Q
    |||||||| |||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||| |||| |||||||    
T  49162108 ctccattcattttcttttgatgtttcagaacttcaactatattccaaaatttttgatgttttagtgaatttattattgttttctcaatttta-ccttgtt 49162206  T
Q  226 ggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  49162207 ggaaaacaccataaactattaaagtagttgtaacctttg 49162245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 18835705 - 18835851
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtga--atttattattgttttatcaagttta 217  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||  || |||||||||||| |||| ||||    
T  18835705 tactcccttcatttattttcttttgatgttttagaacttcaactatattccaaaactttcgatgttttagtgaatatatattattgttttctcaaattta 18835804  T
Q  218 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
     ||||||| |||||||  |||||||||||||||||||||||| ||||    
T  18835805 tccttgttagaaaacatcataaactattaaagtagttgtgacatttg 18835851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 30469445 - 30469353
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaa 212  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  30469445 tactcccttcattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 30469353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 135 - 264
Target Start/End: Complemental strand, 50774325 - 50774191
Alignment:
Q  135 ttttcttttgatgttttagaacttcaactatataccaaaacttttgatg-----ttttagtgaatttattattgttttatcaagtttacccttgttggaa 229  Q
    |||| ||||||||||||||||||| ||||||||  |||||||||||||      |||||||||||||||||||||||| |||||||||| ||||||||||    
T  50774325 tttttttttgatgttttagaactttaactatatttcaaaacttttgatacagtattttagtgaatttattattgttttctcaagtttactcttgttggaa 50774226  T
Q  230 aacacaataaactattaaagtagttgtgacctttg 264  Q
    ||||||||||||||||||| |||| ||||| ||||    
T  50774225 aacacaataaactattaaattagtcgtgacttttg 50774191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 39481906 - 39482002
Alignment:
Q  123 tccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacc 219  Q
    |||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||| ||| |||||||    
T  39481906 tccctccatttcttttcttttgatgttttagaacttcaactattttccaaaacttttgatgttttagtaaatttattattgttttctcaggtttacc 39482002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 36971115 - 36971192
Alignment:
Q  186 ttagtgaatttattattgttttatcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  36971115 ttagtgaatttattattgttttctgaagtttacc-ttgttggaaaacacaataaactattaaaatagttgtgacctttg 36971192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 19256177 - 19256255
Alignment:
Q  111 ataatttattactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttag 189  Q
    |||| ||| ||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||||||||    
T  19256177 ataaattaatactccctccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 19256255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 36016279 - 36016326
Alignment:
Q  120 tactccctccattccttttcttttgatgttttagaacttcaactatat 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36016279 tactccctccattccttttcttttgatgttttagaacttcaactatat 36016326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 36968353 - 36968407
Alignment:
Q  135 ttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttag 189  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36968353 tttttttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 36968407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 26025784 - 26025685
Alignment:
Q  135 ttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacccttgttggaaaacac 234  Q
    ||||||||||||||||||| ||||||||||||| ||||||  |||||  |||||||  ||||| |||| ||||  ||||||||||||||||| |||||||    
T  26025784 ttttcttttgatgttttaggacttcaactatattccaaaatatttgacattttagtatatttaatatt-ttttcccaagtttacccttgttgaaaaacac 26025686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 264
Target Start/End: Complemental strand, 33109163 - 33109031
Alignment:
Q  135 ttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttacccttgttggaaaacac 234  Q
    ||||||||| ||||||||| |||||||||||||   ||||   |||||||||||||  ||||| |||| |||| | ||||||| |||||||  |||||||    
T  33109163 ttttcttttaatgttttaggacttcaactatattttaaaataattgatgttttagtatatttaatatttttttcttaagtttatccttgttaaaaaacac 33109064  T
Q  235 a--at-aaactattaaagtagttgtgacctttg 264  Q
    |  || |||||||||||  ||||||||||||||    
T  33109063 accataaaactattaaatgagttgtgacctttg 33109031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 154
Target Start/End: Complemental strand, 19257137 - 19257103
Alignment:
Q  120 tactccctccattccttttcttttgatgttttaga 154  Q
    |||||||||||||||||||||||||||||||||||    
T  19257137 tactccctccattccttttcttttgatgttttaga 19257103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 8955779 - 8955809
Alignment:
Q  123 tccctccattccttttcttttgatgttttag 153  Q
    |||||||||||||||||||||||||||||||    
T  8955779 tccctccattccttttcttttgatgttttag 8955809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 45591019 - 45590986
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    |||||||||||||| |||||||||||||||||||    
T  45591019 tactccctccattcattttcttttgatgttttag 45590986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 49162365 - 49162332
Alignment:
Q  120 tactccctccattccttttcttttgatgttttag 153  Q
    ||||||||||||||| ||||||||||||||||||    
T  49162365 tactccctccattccctttcttttgatgttttag 49162332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 39482138 - 39482106
Alignment:
Q  121 actccctccattccttttcttttgatgttttag 153  Q
    |||||||||||| ||||||||||||||||||||    
T  39482138 actccctccatttcttttcttttgatgttttag 39482106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 120 - 264
Target Start/End: Original strand, 44619 - 44764
Alignment:
Q  120 tactccctccattccttttcttt-tgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttatcaagtttac 218  Q
    |||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  44619 tactcccttcattccttttctttctgatgtttgagaacttcaactatattccaaaacttttgaggttttagtgaatttattattgttttctcaagtttac 44718  T
Q  219 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 264  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  44719 ccttgttgaaaaacacaataaactattaaagtagttgtgacctttg 44764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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