View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_high_36 (Length: 252)
Name: NF3048_high_36
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 38453072 - 38452874
Alignment:
| Q |
7 |
cttgattcccaaatcagattagtataagaaataatttataacataagttgtgtttaatattgtaactataatatttgaaacattgactgaaacgttttgg |
106 |
Q |
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| T |
38453072 |
cttgattctcaaatcagattagtatcagaaataattcataatagaagttctgcttaatattgcaagtagaatatttgaaacactgacgtaaacattttgg |
38452973 |
T |
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| Q |
107 |
tatggatagagaatgtaaacagattaagaggtgcatgaattccacaagaaaatctgaagggattcagtttttccactcatcattgatgagtgtaatcca |
205 |
Q |
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| T |
38452972 |
tatggatagagattgtaaacagattaagaggtacatgaattccacaagaaaatccaaaggggttcagtttttccactcatcattgatgagcgtaatcca |
38452874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 39849502 - 39849580
Alignment:
| Q |
10 |
gattcccaaatcagattagtataagaaataatttataacataagttgtgtttaatattgtaactataatatttgaaaca |
88 |
Q |
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| T |
39849502 |
gattcccaaatcagattagtataagaaataatttataatataggctgtgtttgatattgtaagtataatatttgaaaca |
39849580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 38637727 - 38637798
Alignment:
| Q |
122 |
taaacagattaagaggtgcatgaattccacaagaaaatctgaagggattcagtttttccactcatcattgat |
193 |
Q |
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| T |
38637727 |
taaacagattaagaggtacatgaattctacgataaaatccaaaagggcttagtttttccactcatcattgat |
38637798 |
T |
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