View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_high_38 (Length: 243)
Name: NF3048_high_38
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 46809068 - 46809293
Alignment:
| Q |
1 |
cgtttaaccttgagcaaggtgatactattaaactccctgcgggctcgactgcttatctagttaaccaagacaatgatgaggatcttagggtagtagatct |
100 |
Q |
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| T |
46809068 |
cgtttaaccttgagcaaggtgatactattaaactccctgcgggctcgactgcttatctagttaaccaagacaatgatgaggatcttagggtagtagatct |
46809167 |
T |
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| Q |
101 |
cgtcatacctgttaataggcctggtaaatttcaggtaatatatataatgctaaacttttcctcacatgcaccacatatataaatagtttacaccaatact |
200 |
Q |
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| T |
46809168 |
cgtcatacctgttaataggcctggtaaatttcaggtaatatatataatgctaaacttttcctcacatgcaccacatatataaatagtttacaccaatact |
46809267 |
T |
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| Q |
201 |
agtttttctatttctaacagttgatc |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
46809268 |
agtttttctatttctaacagttgatc |
46809293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 30298047 - 30298170
Alignment:
| Q |
18 |
ggtgatactattaaactccctgcgggctcgactgcttatctagttaaccaagacaatgatgaggatcttagggtagtagatctcgtcatacctgttaata |
117 |
Q |
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| T |
30298047 |
ggtgatactatcaaactccctgccggcagcattgcttatttggctaaccgagatgacaatgaggatcttagagtattagatcttgccatccccgttaaca |
30298146 |
T |
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| Q |
118 |
ggcctggtaaatttcaggtaatat |
141 |
Q |
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| T |
30298147 |
gacccggtaaatttcaggtaatat |
30298170 |
T |
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