View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3048_high_42 (Length: 238)
Name: NF3048_high_42
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_high_42 |
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| [»] chr8 (3 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 15196172 - 15195952
Alignment:
| Q |
18 |
cgttcttgaccaagattcatattgactctttaacttctcatcagagtgcaaagcaataatcttgtacatctctaaagcacctttaccaagcccgccttct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15196172 |
cgttcttgaccaagattcatattgactctttaacttctcatcagagtgcaaagcaataatcttgtacatctctaaagaacctttaccaagcccgccttct |
15196073 |
T |
|
| Q |
118 |
tctaatagctccctgactttcattgtaaccccacaaactatcatagcatttccaaaataatcatatgatagtggtggaaccaaccttgatctaacactta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15196072 |
tctaatagctccctgactttcattgtaaccccacaaactatcatagcatttccaaaataatcatatgatagtggtggaaccaaccttgatctaacactta |
15195973 |
T |
|
| Q |
218 |
tacataacacaaaattcactt |
238 |
Q |
| |
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||||||||||||||||||||| |
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| T |
15195972 |
tacataacacaaaattcactt |
15195952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 208
Target Start/End: Original strand, 30141784 - 30141943
Alignment:
| Q |
41 |
gactctttaacttctcatcagagtgcaaagcaataatcttg------tacatctctaaagcacctttaccaagcccgccttcttctaatagctccctgac |
134 |
Q |
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||||||||||||||||||||||||||||||||||| || || | |||||||||| |||||||||||||||| |||||||||||||||||| |||| |
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| T |
30141784 |
gactctttaacttctcatcagagtgcaaagcaatactcctgattcattgcatctctaaaacacctttaccaagcccaccttcttctaatagctccttgac |
30141883 |
T |
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| Q |
135 |
tttcattgtaaccccacaaactatcatagcatttccaaaataatcatatgatagtggtggaaccaaccttgatc |
208 |
Q |
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|||||| ||||||||||||||||||||||||||||| | |||||| |||||||||||||| |
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| T |
30141884 |
tttcat--------------gtatcatagcatttccaaaataatcatatggtggtggtgaaaccaaccttgatc |
30141943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 15744933 - 15744879
Alignment:
| Q |
53 |
tctcatcagagtgcaaagcaataatcttgtacatctctaaagcacctttaccaag |
107 |
Q |
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|||||||||| ||||||||||| ||||||| |||||| ||||||||||||||||| |
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| T |
15744933 |
tctcatcagattgcaaagcaatcatcttgttcatctccaaagcacctttaccaag |
15744879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 8999039 - 8999258
Alignment:
| Q |
19 |
gttcttgaccaagattcatattgactctttaacttctcatcagagtgcaaagcaataatcttgtacatctctaaagcacctttaccaagcccgccttctt |
118 |
Q |
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||||| |||||||| || |||||| |||| ||| || |||||||||||||||| || |||||| |||||||| ||||||||||||| || || |||||| |
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| T |
8999039 |
gttctcgaccaagactcgtattgattcttcaacatcgcatcagagtgcaaagctatcatcttgcacatctcttaagcacctttacccagtccaccttctc |
8999138 |
T |
|
| Q |
119 |
ctaatagctccctgactttcattgtaaccccacaaactatcatagcatttccaaaataatcatatgatagtggtggaaccaaccttgatctaacacttat |
218 |
Q |
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| | || || | ||||||||||||||| |||||||||| ||||||||||||||| || | || | |||||||| ||||||| ||||||| || || |
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| T |
8999139 |
caagtaattctccaactttcattgtaaccttgcaaactatcaaagcatttccaaaatattcctctggcaatggtggaatcaaccttaatctaacgctaat |
8999238 |
T |
|
| Q |
219 |
acataacacaaaattcactt |
238 |
Q |
| |
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||||| ||||||||| |||| |
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| T |
8999239 |
acatatcacaaaattaactt |
8999258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 7615347 - 7615532
Alignment:
| Q |
20 |
ttcttgaccaagattcatattgactctttaacttctcatcagagtgcaaagcaataatcttgtacatctctaaagcacctttaccaagcccgccttcttc |
119 |
Q |
| |
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||||| ||||||| || || ||| |||| ||||||||||||| ||| || |||| | ||||| |||||| |||||||||||| ||| || |||||||| |
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| T |
7615347 |
ttcttaaccaagactcgtagtgattcttcaacttctcatcagtgtgtgaaacaattaacttgttcatctcacaagcacctttacaaagtccaccttcttc |
7615446 |
T |
|
| Q |
120 |
taatagctccctgactttcattgtaaccccacaaactatcatagcatttccaaaataatcatatgatagtggtggaaccaaccttg |
205 |
Q |
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| | ||||| ||||||||| ||||| |||| ||| | |||||||||||||||| | || || ||||||||| ||||||| |
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| T |
7615447 |
caccaactccccaactttcattttaaccatacaacttataagtgcatttccaaaataatattctggtaatggtggaactaaccttg |
7615532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 7637164 - 7637349
Alignment:
| Q |
20 |
ttcttgaccaagattcatattgactctttaacttctcatcagagtgcaaagcaataatcttgtacatctctaaagcacctttaccaagcccgccttcttc |
119 |
Q |
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||||| ||||||| || || ||| |||| ||||||||||||| ||| ||||||| | ||||| |||||| ||||||||||||| ||| || ||||| || |
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| T |
7637164 |
ttcttaaccaagactcgtaatgattcttcaacttctcatcagtgtgtgaagcaattaacttgttcatctccaaagcacctttacaaagtccaccttcctc |
7637263 |
T |
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| Q |
120 |
taatagctccctgactttcattgtaaccccacaaactatcatagcatttccaaaataatcatatgatagtggtggaaccaaccttg |
205 |
Q |
| |
|
|| | |||| |||||||| ||||| |||| ||| | ||||||||||||||||| | || || |||||||| ||||||| |
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| T |
7637264 |
caacaattccccagctttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaacggtggaactaaccttg |
7637349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 179
Target Start/End: Complemental strand, 7656135 - 7656000
Alignment:
| Q |
44 |
tctttaacttctcatcagagtgcaaagcaataatcttgtacatctctaaagcacctttaccaagcccgccttcttctaatagctccctgactttcattgt |
143 |
Q |
| |
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||||||| || |||| |||||||||||||| | ||| | |||| |||||||||||||||| ||| ||||| || || | ||||| ||||||||| | |
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| T |
7656135 |
tctttaatttttcattcgagtgcaaagcaattaacttattcatcaacaaagcacctttaccaatcccaccttcctccaacaactccccaactttcatttt |
7656036 |
T |
|
| Q |
144 |
aaccccacaaactatcatagcatttccaaaataatc |
179 |
Q |
| |
|
|| ||| ||| |||| || || |||||||||||||| |
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|
| T |
7656035 |
aaacccgcaacctataatcgcgtttccaaaataatc |
7656000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 8936123 - 8936027
Alignment:
| Q |
20 |
ttcttgaccaagattcatattgactctttaacttctcatcagagtgcaaagcaataatcttgtacatctctaaagcacctttaccaagcccgccttc |
116 |
Q |
| |
|
||||| ||||||| ||||| ||| |||| ||||||||||||| ||| |||||||| | ||||| |||||| |||||||||||| ||| || ||||| |
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|
| T |
8936123 |
ttcttaaccaagactcatagtgattcttcaacttctcatcagtgtgtaaagcaattaacttgttcatctcacaagcacctttacaaagtccaccttc |
8936027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 6500655 - 6500775
Alignment:
| Q |
92 |
aagcacctttaccaagcccgccttcttctaatagctccctgactttcattgtaaccccacaaactatcatagcatttccaaaataatcatatgatagtgg |
191 |
Q |
| |
|
||||||||||||||| |||||||||||| || | ||| | ||||||| |||||| |||| |||||| |||||||||||||||||| | || || | | |
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|
| T |
6500655 |
aagcacctttaccaatcccgccttcttccaacaactcaccagctttcatgctaaccctacaatctatcacagcatttccaaaataatcttgtggtaatag |
6500754 |
T |
|
| Q |
192 |
tggaaccaaccttgatctaac |
212 |
Q |
| |
|
|||||| | ||||| |||||| |
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|
| T |
6500755 |
tggaacaagccttggtctaac |
6500775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 11969143 - 11969188
Alignment:
| Q |
134 |
ctttcattgtaaccccacaaactatcatagcatttccaaaataatc |
179 |
Q |
| |
|
||||||||| ||||||||||| ||| | |||||||||||||||||| |
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|
| T |
11969143 |
ctttcattgaaaccccacaaattataacagcatttccaaaataatc |
11969188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 40147315 - 40147197
Alignment:
| Q |
92 |
aagcacctttaccaagcccgccttcttctaatagctccctgactttcattgtaaccccacaaactatcatagcatttccaaaataatcatatgatagtgg |
191 |
Q |
| |
|
||||||||||||||||||| || ||||| || | ||| | ||||||||||||||| ||||||| | |||||||||||||||||| | | | ||| |
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|
| T |
40147315 |
aagcacctttaccaagcccaccatcttccaacaactctcccgctttcattgtaaccctacaaacttcaacagcatttccaaaataatcttcaggcaatgg |
40147216 |
T |
|
| Q |
192 |
tggaaccaaccttgatcta |
210 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
40147215 |
tggaacaaaccttgatcta |
40147197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 4589 - 4646
Alignment:
| Q |
53 |
tctcatcagagtgcaaagcaataatcttgtacatctctaaagcacctttaccaagccc |
110 |
Q |
| |
|
||||||||||||||||| |||| ||||||| |||||| |||| || ||||||||||| |
|
|
| T |
4589 |
tctcatcagagtgcaaaacaatcatcttgttcatctccaaagagcccttaccaagccc |
4646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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