View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_high_51 (Length: 214)
Name: NF3048_high_51
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_high_51 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 29786476 - 29786291
Alignment:
| Q |
12 |
cacagaaccatatacaaatgaaatctttgatttgtttgttttcacagcctggattgaatgagtcaaagcccttggtgccagagattccaaatgaaaaaca |
111 |
Q |
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| T |
29786476 |
cacagaaccatatacaaatgaaatctttgatttgtttgttttcacagcctggattgaatgagtcaaagcccttggtgccagagattccaaatgaaaaaca |
29786377 |
T |
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| Q |
112 |
agatcggcctagtccaatctcagtgttagaatctccatttgaagaatacaatacacctcatgagtccttggaaagcacgaaagatg |
197 |
Q |
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| T |
29786376 |
agatcggcctagtccaatctcagtgttagaatctccatttgaagaatacaatacacctcatgagtccttggaaagcacgaaagatg |
29786291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 39874497 - 39874634
Alignment:
| Q |
46 |
tttgttttcacagcctggattgaatgagtcaaagcccttggtgccagagattccaaatgaaaaacaagatcggcctagtccaatctcagtgttagaatct |
145 |
Q |
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| T |
39874497 |
tttgttttcacagcctgaattgaccatgtcaaagcccagggtgccatggatttccagtgaaaaccaggatcagccaagtccaatctcagttttagaacct |
39874596 |
T |
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| Q |
146 |
ccatttgaagaatacaatacacctcatgagtccttgga |
183 |
Q |
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| T |
39874597 |
ccatttgaagatgaaaatgcagctcacgagtccttgga |
39874634 |
T |
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