View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_high_7 (Length: 460)
Name: NF3048_high_7
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_high_7 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 9829002 - 9829458
Alignment:
| Q |
1 |
acatttactaactcgtcagcacttctttcctgaacacgattccatataagtttacaaatcggtttnnnnnnnnnnnnnnnnntttcatactcactaataa |
100 |
Q |
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| T |
9829002 |
acatttactaactcatcagcacttctttcctgaacacgattccttataagtttactaatcggtttatcatcatcatcat---tttcatactcactaataa |
9829098 |
T |
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| Q |
101 |
agacattatgagtccgtttccttttcggtattacagcacataagagatcttcaacaaaatcagaatcttccttattgctttgatcataattggagtacaa |
200 |
Q |
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| T |
9829099 |
agacattacgagtccgtttccttttcggaattacagcacataagagatcttcaacaaaatcagaatcttcctcgttgctttgatcataattggagtacaa |
9829198 |
T |
|
| Q |
201 |
attctttcccttttctgctgcagaacacgttgacagagaattacattgactaccttgcatatcaaatacatcttgaaaattagaattcttgttactcgta |
300 |
Q |
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| T |
9829199 |
attctttcccttttctgctgcagaacacgttgacagagaattacattgactaccttgcatatcagatacatcttgaaaattagaattcttgttactcgta |
9829298 |
T |
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| Q |
301 |
ttagattccgcgtcactattagacccatctagtgaattattagacatgtcttcacaatcagatgcatcaaaatcatcaccaataaaatcaatattgtttc |
400 |
Q |
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| T |
9829299 |
ttagattccgcgtcactattagacccatctagtgaattattagacatgtcttcacaatcagatgcatcaaaatcatcaccaataaaatcaatattgtttc |
9829398 |
T |
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| Q |
401 |
cttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgttggaatacttt |
460 |
Q |
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| T |
9829399 |
cttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgttggaatacttt |
9829458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 83 - 451
Target Start/End: Original strand, 9755629 - 9755993
Alignment:
| Q |
83 |
tttcatactcactaataaagacattatgagtccgtttccttttcggtattacagcacataagagatcttcaacaaaatcagaatcttccttattgctttg |
182 |
Q |
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||||| ||||||| |||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
9755629 |
tttcagactcacttataaagacattacgagtccgtttcctttttggaattacagcacataagagatcttcaacaaaatcagaatcttcctcactgctttg |
9755728 |
T |
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| Q |
183 |
atcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactaccttgcatatcaaatacatcttgaaaatta |
282 |
Q |
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| T |
9755729 |
atcataattggagtacaaattctttcccttttttgttgcagaacatgttgactgagaaatatattcactgccttgcatatcagacacatcttgaaaataa |
9755828 |
T |
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| Q |
283 |
gaattcttgttactcgtattagattccgcgtcactattagacccatctagtgaattattagacatgtcttcacaatcagatgcatcaaaatcatcaccaa |
382 |
Q |
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| T |
9755829 |
gagttcttgttactagta----attctgcgtcactattagactcatcttgtgaagtattagacatgccttcacaatcagatgcatcaaaatcatcaacaa |
9755924 |
T |
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| Q |
383 |
taaaatcaatattgtttccttcctcactgtatgtcgaatcctcttctaattcatcatcatcatttgttg |
451 |
Q |
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| T |
9755925 |
taaaatcattcatgtttccttcctcactgtatgtcaaatcctcttctagttcatcatcatcgtttgttg |
9755993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 156 - 417
Target Start/End: Original strand, 9813864 - 9814122
Alignment:
| Q |
156 |
aaaatcagaatcttccttattgctttgatcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactacct |
255 |
Q |
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| T |
9813864 |
aaaatcagatttttcgtcattgatttgatcctaattggagtaaaaattctttcccttttctgctgcagaatttgttgacagagaaatacttccactacct |
9813963 |
T |
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| Q |
256 |
tgcatatcaaatacatcttgaaaattagaattcttgttactcgtattagattccgcgtcactattagacccatctagtgaattattagacatgtcttcac |
355 |
Q |
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| T |
9813964 |
tgcatatcagatacatcttgcaaataagaatccttgctacacgaactagattctgcgtcactgctagactcatctcgtgaattattagacatgccttcac |
9814063 |
T |
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| Q |
356 |
aatcagatgcatcaaaatcatcaccaataaaatcaatattgtttccttcctcactgtatgtc |
417 |
Q |
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| T |
9814064 |
aatcagatgcatcaaaataat---caataaaatcactattgttttcttcctcattgtgtgtc |
9814122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 313 - 458
Target Start/End: Original strand, 9708475 - 9708620
Alignment:
| Q |
313 |
tcactattagacccatctagtgaattattagacatgtcttcacaatcagatgcatcaaaatcatcaccaataaaatcaatattgtttccttcctcactgt |
412 |
Q |
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| T |
9708475 |
tcactattagactcttcctgtgacttatcagatatgtcttcacaatcagatgcatcaacatcatcaacaataaaatcactaaggttatcttcctcactat |
9708574 |
T |
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| Q |
413 |
atgtcgaatcctcttctaattcatcatcatcatttgttggaatact |
458 |
Q |
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||| | ||||| || ||| ||||||||||||||| |||||||||| |
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| T |
9708575 |
atgacaaatccactcctaggtcatcatcatcattttttggaatact |
9708620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 156 - 296
Target Start/End: Original strand, 9804111 - 9804250
Alignment:
| Q |
156 |
aaaatcagaatcttccttattgctttgatcataattggagtacaaattctttcccttttctgctgcagaacacgttgacagagaattacattgactacct |
255 |
Q |
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|||||||||| ||||| |||| ||||||||||||||||||| || ||||| | ||||||||||||||||| |||| ||||||| ||| | ||||||| |
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| T |
9804111 |
aaaatcagaaatttcctcattgttttgatcataattggagtaaaagttctt-cgcttttctgctgcagaacttgttggcagagaaatacctccactacct |
9804209 |
T |
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| Q |
256 |
tgcatatcaaatacatcttgaaaattagaattcttgttact |
296 |
Q |
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| T |
9804210 |
tgcatttcagatacatcctgcaaataagaatccttgctact |
9804250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 9755538 - 9755592
Alignment:
| Q |
1 |
acatttactaactcgtcagcacttctttcctgaacacgattccatataagtttac |
55 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||| || |||||||| |
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| T |
9755538 |
acatttaccaactcgtcagcacttctttcctgaacatgattccttacaagtttac |
9755592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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